Bcop009774.1
Basic Information
- Insect
- Bradysia coprophila
- Gene Symbol
- -
- Assembly
- GCA_014529535.1
- Location
- NC:4421188-4423917[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0037 0.16 12.3 2.9 1 23 71 93 71 93 0.98 2 20 2.9 1.3e+02 3.2 0.3 2 23 100 120 99 120 0.84 3 20 0.38 16 6.0 3.5 1 23 125 148 125 148 0.92 4 20 0.00018 0.0077 16.5 3.6 1 23 153 175 153 175 0.99 5 20 0.00011 0.0047 17.2 4.0 1 23 182 205 182 205 0.97 6 20 0.28 12 6.4 3.5 1 21 213 235 213 236 0.93 7 20 0.033 1.4 9.4 4.4 2 23 251 272 250 272 0.96 8 20 0.012 0.52 10.7 2.2 2 23 282 303 281 303 0.95 9 20 6.2 2.7e+02 2.2 0.1 3 11 324 332 323 345 0.88 10 20 0.57 25 5.5 0.2 1 23 352 375 352 375 0.92 11 20 1.8 78 3.9 0.0 5 23 382 401 379 401 0.92 12 20 0.01 0.44 11.0 0.1 1 23 414 437 414 437 0.96 13 20 2.4e-05 0.001 19.2 2.5 1 23 442 464 442 464 0.96 14 20 5.9e-05 0.0026 18.0 3.0 1 23 467 491 467 491 0.92 15 20 0.55 24 5.5 4.1 1 23 495 517 495 517 0.91 16 20 1 43 4.7 0.3 2 23 527 550 526 550 0.91 17 20 0.17 7.1 7.2 0.4 1 20 563 582 563 584 0.94 18 20 2.4e-05 0.001 19.2 1.2 1 23 620 644 620 644 0.93 19 20 0.00029 0.013 15.8 1.5 1 21 648 668 648 669 0.95 20 20 0.077 3.3 8.2 2.7 1 19 687 705 687 707 0.95
Sequence Information
- Coding Sequence
- atggaTTCGATAACGTATATAAAGAAAGAGGAGCCAGTTGAGTACGTTCTTACAGCAGATGATCAAGGAAAAGTGCAAGATTTAACGATTCCGAAAGAAGTGACGaaGGAGAAATTCTCGGCAACCATTAAGCAAGAACTGAATAGCTGCAGTGgttcagaaaatgaaaacattgacAAGGCGGAACGTAACAAAGGacctttcaaaatatttcaatgtgATAAATGCAGCGTAGGATACAAATCGTTACGTACGCTACACAAGCACATTCAGAACCATAATCGACAGGATAAAGTACAATGTAAAATATGCAAAGGATTTTACAATACATCACAGTTGCCACTTCACATTCAAATACACACCGGACCACCGTACAATTGcccaatttgtttaaaaaaatttgagatgATTCATAGTTGGAAAAAACACTGTAGAATCATGCATAGAGAGAAAACATTTAAGTGCGAAAAATGTCAACGATCGTTTCTACAGAAACACGCTCTAATGGATCATATGCAGACACATGAAGAAAGAGAAAAGAGTTTTACGTGCAAAGAATGTGGCGTTTGCTTCTATCGTGAGGAATCCTTTACTCGTCACTTAAGCAAACAACATTCACACATACCCCGTCAATTATACAAATGCTCGAACACTGCTTGTAATAAGATCTTCAGAACAAATCGCTTTTTCCAGTCTCACGTCTGTCGAAAAAAAGGCATAGAAAAGTTACCAAAAAGAATCAAATACTTAAGTTGCACCACATGTCTGTGTGACTTCTCCACGAAAAAAGCTTTCAAAGATCACCAAAAAATGCATCGCCGAGAGCAACGCACCGAGTACTTAACGTGTTCGACATGTCAGAGTcaattttttacgaaaaaggATTTAATAAAGCATCAGTCATTGCACCAAGAGGATCGTCGAGAGTTGATTCGGAAGCGAAAAAATATGCACGCAAAGCGGCGCAATTGCGAACAGTGTAATCGAAATTTTAAGATAACCGACGCGAGCTATCAGCTACATTTGGCTCAACATTGTCCCGACAAGATAATGTATGAGTGCGACAATTGTTCACGCTTGTTTTACGGCAAATTTGCTATCCTCGCTCATTTATCTCAGGCGCATAAGAATCACTTTGAGTGCGAATGCGGATCAGCATTCACGAAGAAAGAGGAGATAGTTGAACACATACTTCTCGCACACTCGCCCAATTGTTTCGAAGAAGATGAAAAGGGGACGTTTACTTGCTTGAGATGTAGCAAGGCATTCGTTGATGTTGAACTGTATCTTGAACATATGCAAGAGGGACATTGTGCCTACAAATTCAAATGTACACTGTGTGATAAGAGATTTCCCAGTAACAAGGCGTTGAAAAGGCACGCAATTCATCACTTAAGATATTCTTGTGCTCACTGTGGTAGATCCtatcacaataaaaattcacttaaaGTGCATATGCagagaggtgaacacaacacaacgtttgtttgtaaattttgccacaaagtatttttaaacaAAGGCTCGCGTAATACTCATTCATTGTACCACTGCCCCAAAAACAGTGGAAAAGTATTTCTTTGCGATATTTGCAAGTCGGTGAAATACACCAAAAAAGCTGACATCATCAAACACATGCTGGTCACGCATTCACCGAAAACTGTTAGAGCGAACGATGATGGATCGTTTACGTGCGGTCGATGCAAAGCGGTATTTGTTGGCAAAGATTATTTCCTTAACCATGTCCATTTGCGTAATTGtgtgaagaaaattcaatgcGAAAAATGTTCGAGAGTCATGACACATTCACGATATGATGTACATGATTGTGGACAGCATAATAGCGAGTCAAGAGCGTTCAAATGTGAGCTATGTGATAGTACATTCAAAACTAGTTACACCTTGTTGATGCACATGCGAAGAGGCGAACATCGCACCAGCTTCGAGTGTGAATATTGCCATAAAGTATTTAGCGGTAAAGGATCTTACATGAGTcactacaaaaatttttgcaagAAAAACAAACCTCAGGAATTGAGACCGGAACTGCCGACaaattttgaatgtaaattaTGCGACAGAAAATTCGATAACTTGGGATCGTATCTTACtcattgcaaatttttttgtaaaatgaatcagcCAGATGTGAGTGATAACGAAAGTGGCAATGTTGTAGTAACAAAATTACCGGTTGTACCCATATACAAAAATCTGTATGGTGATTATTAG
- Protein Sequence
- MDSITYIKKEEPVEYVLTADDQGKVQDLTIPKEVTKEKFSATIKQELNSCSGSENENIDKAERNKGPFKIFQCDKCSVGYKSLRTLHKHIQNHNRQDKVQCKICKGFYNTSQLPLHIQIHTGPPYNCPICLKKFEMIHSWKKHCRIMHREKTFKCEKCQRSFLQKHALMDHMQTHEEREKSFTCKECGVCFYREESFTRHLSKQHSHIPRQLYKCSNTACNKIFRTNRFFQSHVCRKKGIEKLPKRIKYLSCTTCLCDFSTKKAFKDHQKMHRREQRTEYLTCSTCQSQFFTKKDLIKHQSLHQEDRRELIRKRKNMHAKRRNCEQCNRNFKITDASYQLHLAQHCPDKIMYECDNCSRLFYGKFAILAHLSQAHKNHFECECGSAFTKKEEIVEHILLAHSPNCFEEDEKGTFTCLRCSKAFVDVELYLEHMQEGHCAYKFKCTLCDKRFPSNKALKRHAIHHLRYSCAHCGRSYHNKNSLKVHMQRGEHNTTFVCKFCHKVFLNKGSRNTHSLYHCPKNSGKVFLCDICKSVKYTKKADIIKHMLVTHSPKTVRANDDGSFTCGRCKAVFVGKDYFLNHVHLRNCVKKIQCEKCSRVMTHSRYDVHDCGQHNSESRAFKCELCDSTFKTSYTLLMHMRRGEHRTSFECEYCHKVFSGKGSYMSHYKNFCKKNKPQELRPELPTNFECKLCDRKFDNLGSYLTHCKFFCKMNQPDVSDNESGNVVVTKLPVVPIYKNLYGDY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00246638;
- 90% Identity
- iTF_00246638;
- 80% Identity
- -