Bcop009606.1
Basic Information
- Insect
- Bradysia coprophila
- Gene Symbol
- -
- Assembly
- GCA_014529535.1
- Location
- NC:1142496-1145439[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.093 4 7.9 0.6 1 23 31 53 31 53 0.94 2 19 8.7 3.7e+02 1.7 2.0 2 23 140 161 139 163 0.58 3 19 0.017 0.72 10.3 0.2 6 23 221 239 221 239 0.98 4 19 0.35 15 6.1 0.8 5 23 279 297 275 297 0.90 5 19 0.00061 0.026 14.8 0.9 1 23 303 326 303 326 0.96 6 19 0.046 2 8.9 1.2 1 23 377 399 377 399 0.94 7 19 0.1 4.3 7.8 0.8 1 23 433 456 433 456 0.96 8 19 1.3e-05 0.00055 20.1 4.8 2 23 480 501 479 501 0.97 9 19 0.01 0.43 11.0 0.1 1 23 507 530 507 530 0.91 10 19 0.048 2.1 8.8 0.7 3 23 543 564 541 564 0.93 11 19 0.039 1.7 9.1 0.3 1 23 581 604 581 604 0.95 12 19 1.6 68 4.1 5.1 1 23 634 657 634 657 0.90 13 19 1.4 62 4.2 2.5 3 23 681 702 679 702 0.94 14 19 4.3e-06 0.00018 21.6 0.8 1 23 717 739 717 739 0.98 15 19 7e-05 0.003 17.8 1.4 1 23 745 767 745 767 0.98 16 19 0.00012 0.0051 17.1 0.7 1 23 773 795 773 795 0.96 17 19 4.8e-06 0.00021 21.4 2.6 2 23 801 822 800 822 0.97 18 19 0.0043 0.19 12.1 1.6 2 23 829 850 829 850 0.97 19 19 0.024 1 9.8 1.2 1 23 856 879 856 880 0.94
Sequence Information
- Coding Sequence
- ATGCAGACAAACACCAAGGACCATTCGACGAACGGAATGTCATCAACAAAAGCAGCAGAAATCTATCGAAAAGATTGCGGCGGAATCTACTATGTGTGCTTTCATTGCGGAATTCAATTTGCCAGCATTGCCGACACTTTGGTTCACATCGATCACCACTTTTCGTCAGAGAGTGACATGAATGTGGATCAGGCGCCAATGGACATtgttgacagaaaatgtgaaCTGTTGGACAATGTTACCGAAGAAGTGGTTGATCCCAGTCAGTTGGAACAAATATTTATCGACTGTAGCAAATCGATTGAAACGAATGACGAACAAAGTATGCCGATCAATACGGCCACTTATACTGTGATTCATCGAACAACAGTCCAACCGAGGAAAAACTATTCGGATTTGGAAGGACACTTTGAATGGAAGTGCCTTTACTGTTCGAGTTTGTGGAAGAAATTTACAAAGCTCAAACAACACTTGAGGAAACACTACAAAGATCCGTTGCCCAATGTTATACCAGTTGCTACCGAGAGAGAATTCAGTTCACTAACAAGCACACAGTATTCATTCAAATGCACTCTCTGTCCATCGgaattttttgattcaattacATCTCGGCAACACGTTAAAGATTGTCATGCAACAGAACCACTTGAGTGCATTCCGTGTGGACGAAAATTCGTTTCAACGCAATTATTAACCGATCACATGTCAACGGTGCATGATGATGACGATACGAAGCTGGCGATCATGAGTGATAATTGCAAGAACGAGGAACAGCAGGAAATTCAGAACAACAACGAGACATTGCTGTCGCAGCAGAATACGTTCTTATGCATTCTTTGCAATAAGACTTTCAACGGAACACTCAATTTGATGCAGCACACATTTGtccatttcaatttgaaaaattttagttgCACCCAATGTCCAGCCAAATTTCGCCGCATGGCTACGCTCAGAGATCACATGGTAAAAAAGCATTTGTCCGACATTGACGAGCACATCTTCAACATTCAATGCAGATTTTGCAATGATAAAGTCGAGAATTTATTCGAATTCGTCACTCACACATTCACCAACCATTTAGACGAGGGCGACAGAAACAATTCGGATTTGGATACGATACTCGACTATGATTGTCGATTTTGCTTCAAGACATTCACCAAATGGAACGATGCCTATCAACATTTGGGTGTGCATGCAAAAGATGAACTTCCGGAATGTATCCCAAACGAAGCCACGACGGCAAGAGCTTTTTCCGAACGGGCCAAAAGCGGTTTGTATCGATTCGAATTACTTTACAACTGCAAAGAGTGCCCAAGGACATTATGTGGATCGTTCGAAGCTAGAAACCATTGGATTACCGAACACAAACACGTCATAAAAAGTGAGATCGTTCCAAgcgaaaaattgaacaaacgCACCGGAAAAGAGTCTCTGAAGTGTCACGATTGTGATGAAGTATTCTGCACACAATTCAATTTGATGAAACACAGACTGATGCACTTCAAAGTGCAACCGTATCGGTGTCCGATATGCGCGAAACGATTCAGTGTCAGCAGGAACGTACCCATACATGTGAATAAGGTTCACAACACGAAACCCGACGATAACTATTGCCAACTCGATTGTCATTATTGCAAGGCTGAATTTTCCGAAGAGATAAGCTTTATCACACACATGTACAACGAACATCTGTACGTCAATTTCAACATCGAGGAAAATCTGGATGGACGATGTCAATACGAATGTCTATATTGCAAAGAAATGATAGCTCAACGCAGTCAGATGAGTCAGCATCTGCTGGAAAATCATCCAAATGAAACGTTACCCGAAACGGAAAGCAATACGATCACCGCCGAATCATCGATGAACTCATTGAGACACAAAGTGGAATTCATTTACTGTTGTGTCCATTGTCCGAAAAAATTCCGCCTGCCTCATCCGGCCAACGAGCATGTCAAATACAAGcataaaatcgaaaagaaacCCGTCCAGAAAAAGGAGAAGGAAAAGAAAGCGCCAGTATCACGGGATACACATTGCACTCTGTGCAACATAACATTTTTGACCTGGCGTTCCATGCTCAACCATCGAGCGAAGCGACATCCGGAGACGCACAACAAAGATCGGTACAAAAACCGTCCCACATATTACTGTTCAACGTGCGGCAAAGAGTATCGGGACAAGGGCAATTTGAATCAACACGAAGAGACGCATGCTCGTCTCCAATCGTATACGTGCGACATTTGCAACAAATCGTATCGCACCAAAAACTACATCCAATTGCATCTGCTGAGCCACCGCAACGAAAAGAATTTCATCTGCGACCAATGTGGCCGATCGTTTTACAGTGTCAGCAAACTGAACACGCACAGCCAAATCCATCAGAATTTGAAGCTACAATGTGATATGTGCGACAAGGTGTTTTTCACTCGGTACAATCTGAGCAAACACAAGAAGACTCACACCACCGACACGCGACGGAAGTGTAAACTGTGCGACAACTACTTTAAGTCAGCTAATTCGTACCGGACCCATATGCTATTGCATACCGGTATTAAGAAATATGCCTGTCGATACTGTGACATGGCCTTTGCCCAGTCATCTGGTAGAAGGGGGCATGAAAAAATGAAGCATCACATTGCTTAG
- Protein Sequence
- MQTNTKDHSTNGMSSTKAAEIYRKDCGGIYYVCFHCGIQFASIADTLVHIDHHFSSESDMNVDQAPMDIVDRKCELLDNVTEEVVDPSQLEQIFIDCSKSIETNDEQSMPINTATYTVIHRTTVQPRKNYSDLEGHFEWKCLYCSSLWKKFTKLKQHLRKHYKDPLPNVIPVATEREFSSLTSTQYSFKCTLCPSEFFDSITSRQHVKDCHATEPLECIPCGRKFVSTQLLTDHMSTVHDDDDTKLAIMSDNCKNEEQQEIQNNNETLLSQQNTFLCILCNKTFNGTLNLMQHTFVHFNLKNFSCTQCPAKFRRMATLRDHMVKKHLSDIDEHIFNIQCRFCNDKVENLFEFVTHTFTNHLDEGDRNNSDLDTILDYDCRFCFKTFTKWNDAYQHLGVHAKDELPECIPNEATTARAFSERAKSGLYRFELLYNCKECPRTLCGSFEARNHWITEHKHVIKSEIVPSEKLNKRTGKESLKCHDCDEVFCTQFNLMKHRLMHFKVQPYRCPICAKRFSVSRNVPIHVNKVHNTKPDDNYCQLDCHYCKAEFSEEISFITHMYNEHLYVNFNIEENLDGRCQYECLYCKEMIAQRSQMSQHLLENHPNETLPETESNTITAESSMNSLRHKVEFIYCCVHCPKKFRLPHPANEHVKYKHKIEKKPVQKKEKEKKAPVSRDTHCTLCNITFLTWRSMLNHRAKRHPETHNKDRYKNRPTYYCSTCGKEYRDKGNLNQHEETHARLQSYTCDICNKSYRTKNYIQLHLLSHRNEKNFICDQCGRSFYSVSKLNTHSQIHQNLKLQCDMCDKVFFTRYNLSKHKKTHTTDTRRKCKLCDNYFKSANSYRTHMLLHTGIKKYACRYCDMAFAQSSGRRGHEKMKHHIA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -