Bcop004609.1
Basic Information
- Insect
- Bradysia coprophila
- Gene Symbol
- -
- Assembly
- GCA_014529535.1
- Location
- NC:11063034-11083683[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 2.2 95 3.6 4.1 6 23 231 248 231 248 0.99 2 16 1.3 55 4.4 0.0 2 23 268 291 267 291 0.93 3 16 1.2 54 4.4 0.6 6 21 300 315 300 317 0.95 4 16 3.3e-07 1.4e-05 25.1 1.1 1 23 323 345 323 345 0.97 5 16 0.0018 0.076 13.4 0.6 1 23 353 376 353 376 0.94 6 16 0.17 7.1 7.2 3.5 1 23 384 407 384 407 0.95 7 16 0.0013 0.055 13.8 0.5 1 20 413 432 413 433 0.96 8 16 0.038 1.7 9.2 0.1 2 23 445 467 444 467 0.94 9 16 0.00011 0.0046 17.2 2.6 2 23 474 496 473 496 0.97 10 16 0.0029 0.13 12.7 2.0 1 23 501 523 501 523 0.97 11 16 5.5e-05 0.0024 18.1 4.1 1 23 529 552 529 552 0.97 12 16 0.28 12 6.5 0.0 1 23 819 844 819 844 0.93 13 16 3e-05 0.0013 18.9 1.9 1 23 850 872 850 872 0.96 14 16 4.6e-05 0.002 18.3 0.2 2 23 878 899 877 899 0.96 15 16 2.1e-05 0.0009 19.4 2.9 1 23 905 927 905 927 0.99 16 16 0.11 4.7 7.7 2.6 5 23 936 955 933 955 0.94
Sequence Information
- Coding Sequence
- ATGGATTCGTCAAATCAACCACAACTCTGTCGTTTATGTTTGCGCACCATTGAAGATGTAGTGAACATATGGGAAACATTTCAAGATTCAACAATCGCCACAGTTTTGGCAAAACATTTCTGGTTTCAGCTCAACAAAAATGACGGTCTGACGGAGTGGCTATGCACGATTTGTTGGGAACAAACTAAAGCGTTTCACGAGTTCTACGAAAGAGTGGAACAATTCCAGAAGTCATACTGGGAATCGATTAAGAGCGATGGTGGTCGCAATGATGAGACCATTGTTATTGAGCCTGACTTGACTATAGTGAAGTGCGAGGAAACAGAGCTGACAGTACAAGCGATAGATTCGCAACTAAATGAAGAGGACGACTTCGATTACAATGACGATTACGATGATGCATCGAAAACATCACAAACATCCAGTGATAACAGTCAATCTTCGGATAAACCTTCACAAAGTGATGATAACCGAAAGGTATCCGCTAAACGGGACATAAGTTCCTTCAGTCAATCTGACAAAGTAATCAATCAGAAAATCAGAGAGGAACAGAATAAAGAACTGAATGGTCAAATCCGTGAATGGTTCTCAATGAaatgcgatatatgcgacgaAGACGAGTTCGACACCTGGTATGGTGTTAAGTGTCATTATCGCAACGTCCATCAGACTATTGGTTATCTGAAATGttgcgatcaaaaatttcatcgCCGTTGCAAGTTATTGGATCACATTCGTCAGCACATTATCACTCCCGAGTCTAGCAAACTGGACGCTCAAATCCGTgaatatttttcgatgaaatgTGATATTTGCCCCGACGTCCCATTCGGAACATTGGTGGATATGAGACGACATTACCGTGATGTTCACAAAATGCATGGCTATCTGATTTGTTGCGGTAATAAATTTAATCGCCGATACGCGATCATCGCCCATATGCGTTGTCATACCAATCCTGATGAATACCGGTGCGAGCAGTGTGGCAAGAGTTTTACGACGAACAAAGCGTTGAAAAATCACATCGACAATCATGTGCCGCTCGATTCGCGCGCCTTCAAATGTGATTTATGTACGAGTAGTTTCGCTAAAGCAGCGACTTTGAGGCGTCACGTCCAAGACAAACATACTTCAAAGAATGGCGAGAAATTCCCTTGcgaaaaatgcaagaaaaaTTATCGGTCCGAATTGCTCCTGAAATGTCATATTAGGCAGACCCATGACACTTTACACAATTTCGTCTGTGAGATTTGTGCACGTCAATTTAAGTCGAAACAAACACTCCAGAAACACGTTTTCTGCGAACATGCGACAACGCCTCGACCGAAAGTCCAGTGTAATATTTGCGGAAATTGGTATAAGAACGAATATGGTCTTGCTAAGCATATGACCGAGCAACATCGTCATACCGACCCGGTCAGTTGTCCCGTTTGCAACAAGGTGTGTCCCACTAAGCACAGACTGAACCAGCATTTGCGAACTGCTCATGCTGAACGAAAGCACGAATGTGTACTGTGTGACAAAGCGTTTCGGTGTCCCAAGAATTTGAAGGAACACGTCGCAACACATACCGGTGAAGATCTATACAAATGTCAGTACTgcgataaaaaattcaaatctagTGCAAACATGTATTCACATCGCAAAAATACCCATTTGGTTGAATGGACTCGAGACAATGAGAAGAAAGCATTTGCGGACAAGGCAGTAGTATTACCAAAAGctgaaaaaGATATTTATTCAGTAGAATTCAaacgagtaaaaaaaattgtttctttctTCATCATGTTCGATCGAACCGTTTTTGCAACAATGTGTCGGCTTTGCCTGACTGAAAAAGCAAAATTAGTTAGTATTCATTCCAGCGAGCACTCCAATGCAACAAGGTCCACCAAAAAGGCTAcacaaattacgagacaaataattgaaacattCACCACAGTCATGATACAACCAGGGGACAATCTGCCACAGAAAATCTGTATAAGTTGCGTTGAAGCAGTAAAGGCAATGTTGGAATTCCAAAATAAATGCAAACAAAACAACGAAGAATTACTGAAAAGAATTATGGATCAGCGGGATCAGGATGACTGTGAAGTGGAAGTCGatattaaaaacgaaatggaaatcaaaaatgaaatcgaagtgaaaaatgaaagtgaCGACGAGATTTCGGAAGGGATTGGCGTAGATGAAAGTGATTCGATATATGTTCCGGAAGAAGTCGATGAGGATGAACGTGAGACGAAAGAAACTGTAGATGTGAGCATAGATGATGATCGCGATTCTTCATCAAAATCAGACGGGCAGGTCACAAAGAAAAAATACCCGAAACGGAAACGGACGAGTCAAGCTAAACACTCCAAAGGAATAAAGGCGTGTCACATATGTGGGAAACTAATTCAGAATTACAAGTTTCCCTTTCACATTAACAAGCACAACGGATTGAAACCATTCGCCTGTGACATAGATGATTGTGCGTCAGCATTCGCAGCCCCTTATGAGCTGCAGGTTCACAAGAGAATGATCCACTTTAAACAGCCAGAACATAGCTGCGATGTATGTGGAAGAGCTTTCAAACGGAAGCAAGCGCTACGAATACACCGAAGTTATCATTTTGATCCAGAAATTCCATGCAAAATTTGCGAGAAATTGTTCAAGAATGAAAGAGCACTCGAGAAACATATGCTGGTCCATACCATGGAACGAAAGTTCAAATGTGAAACATGTGAAAAATCCTTTCAAACCAGATACACCCTCCGCGTTCATAAAAGAGTCCATACCAATGAGAAGCCCTATTCGTGTCACTGCGGCATGTCGTTCGCATACAATTGTTTACTGAAGGCACATACTGAGAGATATCATAAATAA
- Protein Sequence
- MDSSNQPQLCRLCLRTIEDVVNIWETFQDSTIATVLAKHFWFQLNKNDGLTEWLCTICWEQTKAFHEFYERVEQFQKSYWESIKSDGGRNDETIVIEPDLTIVKCEETELTVQAIDSQLNEEDDFDYNDDYDDASKTSQTSSDNSQSSDKPSQSDDNRKVSAKRDISSFSQSDKVINQKIREEQNKELNGQIREWFSMKCDICDEDEFDTWYGVKCHYRNVHQTIGYLKCCDQKFHRRCKLLDHIRQHIITPESSKLDAQIREYFSMKCDICPDVPFGTLVDMRRHYRDVHKMHGYLICCGNKFNRRYAIIAHMRCHTNPDEYRCEQCGKSFTTNKALKNHIDNHVPLDSRAFKCDLCTSSFAKAATLRRHVQDKHTSKNGEKFPCEKCKKNYRSELLLKCHIRQTHDTLHNFVCEICARQFKSKQTLQKHVFCEHATTPRPKVQCNICGNWYKNEYGLAKHMTEQHRHTDPVSCPVCNKVCPTKHRLNQHLRTAHAERKHECVLCDKAFRCPKNLKEHVATHTGEDLYKCQYCDKKFKSSANMYSHRKNTHLVEWTRDNEKKAFADKAVVLPKAEKDIYSVEFKRVKKIVSFFIMFDRTVFATMCRLCLTEKAKLVSIHSSEHSNATRSTKKATQITRQIIETFTTVMIQPGDNLPQKICISCVEAVKAMLEFQNKCKQNNEELLKRIMDQRDQDDCEVEVDIKNEMEIKNEIEVKNESDDEISEGIGVDESDSIYVPEEVDEDERETKETVDVSIDDDRDSSSKSDGQVTKKKYPKRKRTSQAKHSKGIKACHICGKLIQNYKFPFHINKHNGLKPFACDIDDCASAFAAPYELQVHKRMIHFKQPEHSCDVCGRAFKRKQALRIHRSYHFDPEIPCKICEKLFKNERALEKHMLVHTMERKFKCETCEKSFQTRYTLRVHKRVHTNEKPYSCHCGMSFAYNCLLKAHTERYHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -