Basic Information

Insect: Bradysia coprophila
Gene Symbol: -
Assembly: GCA_014529535.1
Location: NW:4617634-4621543[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00018 0.0079 16.5 0.8 1 23 127 149 127 149 0.98

2 10 8.8e-05 0.0038 17.5 0.4 2 23 189 210 188 210 0.96

3 10 0.37 16 6.0 0.4 1 11 240 250 240 261 0.85

4 10 0.00019 0.0083 16.4 0.8 1 23 267 289 267 289 0.97

5 10 0.00042 0.018 15.3 1.3 1 23 308 330 308 330 0.97

6 10 2.7e-07 1.2e-05 25.4 2.1 1 23 336 358 336 358 0.99

7 10 0.00012 0.0051 17.0 3.3 1 23 364 386 364 386 0.98

8 10 3.1e-06 0.00014 22.0 1.7 1 23 392 414 392 414 0.98

9 10 2.4e-05 0.001 19.2 0.3 1 23 418 440 418 440 0.98

10 10 0.0023 0.099 13.0 0.1 1 23 449 472 449 472 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00018	0.0079	16.5	0.8	1	23	127	149	127	149	0.98
2	10	8.8e-05	0.0038	17.5	0.4	2	23	189	210	188	210	0.96
3	10	0.37	16	6.0	0.4	1	11	240	250	240	261	0.85
4	10	0.00019	0.0083	16.4	0.8	1	23	267	289	267	289	0.97
5	10	0.00042	0.018	15.3	1.3	1	23	308	330	308	330	0.97
6	10	2.7e-07	1.2e-05	25.4	2.1	1	23	336	358	336	358	0.99
7	10	0.00012	0.0051	17.0	3.3	1	23	364	386	364	386	0.98
8	10	3.1e-06	0.00014	22.0	1.7	1	23	392	414	392	414	0.98
9	10	2.4e-05	0.001	19.2	0.3	1	23	418	440	418	440	0.98
10	10	0.0023	0.099	13.0	0.1	1	23	449	472	449	472	0.94

Sequence Information

Coding Sequence: ATGGCAGGAAAACAAAGGCAATCGAATGTAGTCGTTCTTGAAGACAACGATGACGAAATGTACACTGAGGTTGTTTATTTGGACGATCCTTTGGACGACAATGTGCAAAGAGACGAGGCCAGTGAAGATGACGCGGACGAGTTTTATTGCAGCACGTGTGAAATCAACATTTCGTCCGTAGAAGAACACATTGAGCAGTTTCATTACGGCGAAAAGATTGTGGTCGAGGTTCCCGAATCTCCGAATCCACTCGAGTTTGTCAAACTTGAACCGGGTATCGACATAACTGACGAAGAGGCCGATGATACTGAACCGAAGAAGaTTGTTGCTAAATCTgttccaaaaaaattaattgttgcGCCGAGTTCAGTTCAACGTCATAAGTGCAAACAGTGTGCGGCCTCATTTCCATCTATTAAATCGTTGTCCGCTCACATGCGTGTACACAAACTCAGCATTACAGCGAAAGTTGTTAAAGAGTCCAGCTCTGCGCCTCTCATTAAACAGGAAGTCCCCGTTTCAGTAGAAGAGCCAGAGACAGGGCCAGAGCCACTGCAACAGTGGATTTGCAACATCTGTAACACGGAATTTTCGTCATTGAAAAGTCTTAAATTACATGGACGAATGCACAATCCCATTAAGCAACGAACGTTTGAAGAAACTGCcggaaacgaaatgaaatttcttaaaagcaCCACGTCAACGTCATCGGAAATGTTTTACTGTAGTCTATGCGACAAAAGTTACAACGTTTCGTTGAAGGAAATGCACGATAAAATGCATAGTCGCGCAGAGAATTTCATGTGCGTGCAGTGCAACAGACAGTTCACTGACGCCGAACATTTGGATCTACATCTTAGGGCACACAATGATGCAAGAGTTATACAAACCAAAGCTGAGCTTCGGAACATTCGTCTTCCGTACGCCTGCCAGTACTGCAGTAAGGAATTTGCAAGACCGCACGAGAAAGTCAAACACGAACGCATTCATACGGGGGAGAAGCCATACTCCTGTGAAGTTTGTGGTAAAACGTTTAGAGTTGCGTACTGTTTAACGCTACACATGAGAACTCATACGGATGCCAGGCCATTCGTTTGCGCGCAGTGTAACAAAAGATTCAAGTCGAACTCGGTATACAATCATCACTTGCTAACCCATTCGAATGTTCGAGCCTATCAATGTCCATACTGTACGAAGTCATTCAAGACGTCCGTTCAATTATCGGGTCACAAAAACAGCCACACGAAACCCTTCTCTTGCACTGAATGTAATCGTCCTTTCGCCACGTTGTATGCCGTCAAAATTCATATGCAGTCACATCAAAAGACCAATCACAGTTTGAAACACGCTTGTGATATATGTGGCGCAACTTATGCAAGAGGATTCGCTTTGAAGGACCACATTAAGGAACAACATGGTGGAGTCAGTGAAGACATGGCGCAGGAAGGTGCGTCGGAGGATATGATTTTACCGGATATGGATGAAGAGACTGAAATGGCTGGTCAGAGCATACTGCCGGACAACATCAACGAAGAAGAAATAACTATCGGCGAAATCAACCAATTCGAAAATGAGGAAGTGGTCACCGACTGGTTGAACAAGTAA
Protein Sequence: MAGKQRQSNVVVLEDNDDEMYTEVVYLDDPLDDNVQRDEASEDDADEFYCSTCEINISSVEEHIEQFHYGEKIVVEVPESPNPLEFVKLEPGIDITDEEADDTEPKKIVAKSVPKKLIVAPSSVQRHKCKQCAASFPSIKSLSAHMRVHKLSITAKVVKESSSAPLIKQEVPVSVEEPETGPEPLQQWICNICNTEFSSLKSLKLHGRMHNPIKQRTFEETAGNEMKFLKSTTSTSSEMFYCSLCDKSYNVSLKEMHDKMHSRAENFMCVQCNRQFTDAEHLDLHLRAHNDARVIQTKAELRNIRLPYACQYCSKEFARPHEKVKHERIHTGEKPYSCEVCGKTFRVAYCLTLHMRTHTDARPFVCAQCNKRFKSNSVYNHHLLTHSNVRAYQCPYCTKSFKTSVQLSGHKNSHTKPFSCTECNRPFATLYAVKIHMQSHQKTNHSLKHACDICGATYARGFALKDHIKEQHGGVSEDMAQEGASEDMILPDMDEETEMAGQSILPDNINEEEITIGEINQFENEEVVTDWLNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00246591;
90% Identity: iTF_00246591;
80% Identity: -