Basic Information

Insect: Bradysia coprophila
Gene Symbol: -
Assembly: GCA_014529535.1
Location: NW:8301795-8315821[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00026 0.011 16.0 2.4 1 23 274 296 274 296 0.97

2 16 4.3e-05 0.0018 18.4 1.5 1 23 313 335 313 335 0.97

3 16 0.0019 0.082 13.3 3.2 1 23 341 363 341 363 0.98

4 16 2.6e-06 0.00011 22.3 1.7 1 23 370 392 370 392 0.98

5 16 0.0028 0.12 12.7 3.9 1 23 398 420 398 420 0.98

6 16 0.0052 0.22 11.9 4.3 1 23 649 671 649 671 0.96

7 16 0.0026 0.11 12.8 1.9 1 23 700 722 700 722 0.95

8 16 0.061 2.6 8.5 0.6 1 19 728 746 728 748 0.83

9 16 0.005 0.22 11.9 4.0 1 23 755 777 755 777 0.97

10 16 0.071 3.1 8.3 2.1 1 23 786 808 786 808 0.96

11 16 0.00021 0.0089 16.3 2.1 1 23 814 836 814 836 0.98

12 16 1 44 4.7 3.2 1 23 846 868 846 868 0.91

13 16 2e-05 0.00084 19.5 0.9 1 23 874 896 874 896 0.99

14 16 0.015 0.63 10.5 0.7 2 23 901 922 900 922 0.96

15 16 0.00017 0.0072 16.6 3.6 1 23 928 950 928 950 0.94

16 16 0.11 4.7 7.7 5.1 1 20 956 975 956 978 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00026	0.011	16.0	2.4	1	23	274	296	274	296	0.97
2	16	4.3e-05	0.0018	18.4	1.5	1	23	313	335	313	335	0.97
3	16	0.0019	0.082	13.3	3.2	1	23	341	363	341	363	0.98
4	16	2.6e-06	0.00011	22.3	1.7	1	23	370	392	370	392	0.98
5	16	0.0028	0.12	12.7	3.9	1	23	398	420	398	420	0.98
6	16	0.0052	0.22	11.9	4.3	1	23	649	671	649	671	0.96
7	16	0.0026	0.11	12.8	1.9	1	23	700	722	700	722	0.95
8	16	0.061	2.6	8.5	0.6	1	19	728	746	728	748	0.83
9	16	0.005	0.22	11.9	4.0	1	23	755	777	755	777	0.97
10	16	0.071	3.1	8.3	2.1	1	23	786	808	786	808	0.96
11	16	0.00021	0.0089	16.3	2.1	1	23	814	836	814	836	0.98
12	16	1	44	4.7	3.2	1	23	846	868	846	868	0.91
13	16	2e-05	0.00084	19.5	0.9	1	23	874	896	874	896	0.99
14	16	0.015	0.63	10.5	0.7	2	23	901	922	900	922	0.96
15	16	0.00017	0.0072	16.6	3.6	1	23	928	950	928	950	0.94
16	16	0.11	4.7	7.7	5.1	1	20	956	975	956	978	0.93

Sequence Information

Coding Sequence: atgatttttgcaCATCAGCAACAATATATGGAGCGGATTCCCGATTTGACGGGTGTCATTCCCGTTCAAGTGCTAGACGAGTTGGATTATCTACAGGAGAATAATTCTGCCATTATTGCTTCATCAACAAGCTATGCAGATATACTAAACGATTTGATGGAACTGGATGAAAACACGTTGAATTTGCCCATTTCTCAACCTGATAGCATTGAAGAGACAGATCTATTGGATGGATGGGACTCGTTAGCCCTACCAGTTTCTTCATTAAATGTTGCTTCGCCAGTTTCACCGTTAAGTCTAGCCGCACAGATTGACGCAGACTGGAATATTTTAGAATACACCAACTGTGACGCAATTGCATCGAGTAACATCAGTTGGAACTTTGGTGGAGATGTAATGCTAGCACAACAATCATTAGTCCCACAAGTCAATGAAAACTGGAACGTTTTTGACTGTACCAAGACCGACTACGATCAAGGTGGATTACAGACCGAACAAATGGGACAGTGCGAATTAATTCGTAAAGTCGGCGAAAACTTGATTGATTTAGAATCTGAGAAGTGGGACCCAAATACGTCAATCAACAACATGAGTCGGAACTTTGGTGGAGATGCTATGAAATCAAAGAGTGAATCGATCCCCCAAATTGATAATTCGAAGGATTTAGGATATGCTGACTGTGACTTATATACCCCGAGCAACAGCATTCTTCAGAACAGCGGCGTAGATATAGTTCGAAGACAATCAGATGGGTTAACCGAACCACCACAGCAGTTTATCGTTGTTTGTAGTCGAGCAGACGATACGCCGACGATGCAATATGATTGCGACTTGTGCACGAAATCTTTTCGGTTGAAATGGAACTTTGAGAAGCACACAAAAAACCACATCGGtgagaaaaaattcattattgaAACCGCTGCAGCTCTGCGGCGGCATGTATGTAACATATGCCAGAAGTCATTTGGTAGGAAAAAGTCCCTGGACGAGCACTTAAATGTCCACACCGGTACGAAGCCCTACGAATGTAAGAtatgcaaaatgaaatttcaccgGAAAGGATCAATAAATGAACACCTCAAATCCCATTATGCAGATGCGACGCGTTATAAATGCGATGTGTGCAACCAGACATTTTCGAGGAAATGGAATTTGAAAGAACATTCCAGACTACACTCCGATGAGAAGCCGTATAAGTGCACAGTGTGTGAGAAGTCATTTCGGCTGCGAAGATGCTTATCGGTTCATTCGAAAATACACtCTTGTTTTCTGCAAAATAACATTATGATTTGGACACATAATGAACAATATTCGATTCCCGATTTGCCGGGTGAAATTCCCGTACATGTGCTAGACGAGTTGCATAGGCATCAGGAGAATAATTCTGCAATTATTGTACCACCATCCAGTGTAGAAGACATACTGAACGATTTGATGCAACTGGATGAAGAAATTCTGGATTCGTTAGCATTACAAGTTGCTGCAGATTTGGACGCTCTGGATTACACCAGCTACGAATGGAATGCGTTGAGCAACGAGAATGTCGAAGTTAGTTTGAATCTGAACGAAAACGAGAGAAAGTCGGAAGAATCACAGCAAATTGAATTAACCGAATCAATGCAACAGaTCGAAGATCCAGCGACGGCTAACGAAAATACTGGAATAACAACAGAACCAAATAATTTGTCCGTTGATTCAGATCCAGAAGAAGCGAATGTTTCTAATCTACCAACTGATTCATGGGAAATGGTAGAGCAGATTCATCAAGTGTACTCAAATGATTCATTGGACACGTCCAGAAAAGAGATTGCTGAATCCTCTGCAGATTTCAAGcCAGTGGAAAGCTCTGATTATGATAGTGTCCTGAGGGGACCAAGTGCTAAATGTAAGGAACGGACCGTTAGATACCAGAAAACGTTCGTGCAGACTGAAGGTAAAAGAGAGCACGAGTGTAAGCTGTGTACAAAAGTATTTCGAAGCAGATGCGATTTGTCCGGCCATTTACTAAACCACAATCgCAAAAGGAAACGTTTGGCTCACCTAACAGGACCAGAGTCCAACAAAGATGATACGAAGACACCGCGAATGAAGAAGCGTCATGAGTGCAGCGTGTGTAAGAAAACATTTCGGTGGAGATCTAATTTACTGGATCATTTGGTATATCACTCTGGTGCGAGACCGTATGAATGCCAAATTTGTAACAAGACATTTCCatggaaaaaatcttttgcaTATCACAAGGCCCATTGCGGTGTTAAAAAGTTCGTCTGCCGTGTGTGTAATGAATCTTTTAAGCTGCAACACGAGTTGCACAATCATTCGAAAATTCACTCTGTTGGTgTAGATATTAAACCGTATAGGTGCGAGGTGTGTAGCAAATCGTTTTGGTGGCAGTCTCATCTAGATTATCATTTAAAATCCCACTCTGATGCAAAACCCTATGAATGTGCCTTGTGTAAGAAATCTTACCGATATGCAGATTGTTTGAAGTCACACTTACAAGTCCACTGTGTTAACGCTTCAACGCGCCAGCCACACGAATGCGAGATATGCAAGAAGAAATTTCTGTGGAAGAAATCTTTCATGCAGCACATGACACTTCACTCTGatccGTCGTCTTACCGATGCGAGATATGCAATCagatatttaaattgaaaagttcCTTAGATTTACACTTAAGAACACACTCTGGTCCTCTTGAATGTGAGATATGCAAAATAAGGTTTTTGAGCAGATGTGCTTTAGAGCGACACTTGATGGTCCACTCAGaTGTGAAACCCTATGAATGTGACGTAtgcaaaaagtgttttaagtACAAATCTGTTTTGAAGCGGCACTCAGTAGTCCATTCAGACGTGCGACCCTACGAATGCGGGGTGTGCAATAGGACATTTAAGTTGAAAATGTGTCTTCAGTCCCACGCGAAATGCCATTCTGATCTGAAGCCGATTGTGAGTTGTGCGACAAGTCATTTTCGAGCAGAAGTTATTCAGCGTTTCACGGAATCATCCACTCAGCTGAGCAATGTTTAA
Protein Sequence: MIFAHQQQYMERIPDLTGVIPVQVLDELDYLQENNSAIIASSTSYADILNDLMELDENTLNLPISQPDSIEETDLLDGWDSLALPVSSLNVASPVSPLSLAAQIDADWNILEYTNCDAIASSNISWNFGGDVMLAQQSLVPQVNENWNVFDCTKTDYDQGGLQTEQMGQCELIRKVGENLIDLESEKWDPNTSINNMSRNFGGDAMKSKSESIPQIDNSKDLGYADCDLYTPSNSILQNSGVDIVRRQSDGLTEPPQQFIVVCSRADDTPTMQYDCDLCTKSFRLKWNFEKHTKNHIGEKKFIIETAAALRRHVCNICQKSFGRKKSLDEHLNVHTGTKPYECKICKMKFHRKGSINEHLKSHYADATRYKCDVCNQTFSRKWNLKEHSRLHSDEKPYKCTVCEKSFRLRRCLSVHSKIHSCFLQNNIMIWTHNEQYSIPDLPGEIPVHVLDELHRHQENNSAIIVPPSSVEDILNDLMQLDEEILDSLALQVAADLDALDYTSYEWNALSNENVEVSLNLNENERKSEESQQIELTESMQQIEDPATANENTGITTEPNNLSVDSDPEEANVSNLPTDSWEMVEQIHQVYSNDSLDTSRKEIAESSADFKPVESSDYDSVLRGPSAKCKERTVRYQKTFVQTEGKREHECKLCTKVFRSRCDLSGHLLNHNRKRKRLAHLTGPESNKDDTKTPRMKKRHECSVCKKTFRWRSNLLDHLVYHSGARPYECQICNKTFPWKKSFAYHKAHCGVKKFVCRVCNESFKLQHELHNHSKIHSVGVDIKPYRCEVCSKSFWWQSHLDYHLKSHSDAKPYECALCKKSYRYADCLKSHLQVHCVNASTRQPHECEICKKKFLWKKSFMQHMTLHSDPSSYRCEICNQIFKLKSSLDLHLRTHSGPLECEICKIRFLSRCALERHLMVHSDVKPYECDVCKKCFKYKSVLKRHSVVHSDVRPYECGVCNRTFKLKMCLQSHAKCHSDLKPIVSCATSHFRAEVIQRFTESSTQLSNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -