Bcop000435.1
Basic Information
- Insect
- Bradysia coprophila
- Gene Symbol
- -
- Assembly
- GCA_014529535.1
- Location
- NW:3766782-3774808[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00014 0.0061 16.8 0.6 2 23 15 36 14 36 0.96 2 15 0.015 0.65 10.4 0.6 1 23 41 64 41 64 0.92 3 15 0.0074 0.32 11.4 0.2 3 21 102 120 101 121 0.92 4 15 0.00057 0.024 14.9 1.0 1 23 129 151 129 151 0.98 5 15 0.00058 0.025 14.9 2.4 3 23 159 179 157 179 0.96 6 15 7.5e-05 0.0032 17.7 0.6 1 23 185 207 185 207 0.94 7 15 0.22 9.5 6.8 0.7 1 21 213 233 213 234 0.92 8 15 0.00036 0.016 15.5 0.4 1 23 511 534 511 534 0.98 9 15 0.0001 0.0045 17.2 2.1 2 23 558 579 557 579 0.96 10 15 0.0046 0.2 12.1 0.4 3 23 616 637 614 637 0.92 11 15 8.3e-05 0.0036 17.5 0.1 1 21 649 669 649 670 0.94 12 15 0.00096 0.042 14.2 4.3 1 23 678 700 678 700 0.96 13 15 1.6e-05 0.0007 19.8 2.3 3 23 708 728 706 728 0.96 14 15 9.1e-05 0.0039 17.4 0.8 1 23 734 756 734 756 0.98 15 15 0.068 2.9 8.4 2.2 1 23 762 784 762 784 0.97
Sequence Information
- Coding Sequence
- ATGCATGAGGCCAAAAGTAAATCTACAACCATTGAACTACTGCAATGTTCGCTCTGTTCCCAAACATTCAAATATCCGGCTGCTTTGAAGAAACACAGTCTCACACATGTGCCGAAGGAACATATCTGCCGAATATGTAATACAGCATTTGATTCGGAATCTGATGTCCGAACGCATAAAGAAAACGTCCATACGAAACTATCATGCAACAGCTGTCCGGCAACATTTCCAATGAATGAGGAGGAAAAACTATTAGCGCACATGGAACGAATGCATAATGGTAAAGATCGAGAGAATGCCATCTGCGCCGATTGTGGATCACAGtttaaaactcaaaatcaaCTGAAAATACATAACATGACTAAATGTGGAACAGTGAAACAGTTTCAGTGCGATCAATGCGATTCAAAGTTTATGACTCAAAATACTCTAAACGCACATAAAATGATCCACCTTGGCGAGAAGAAACACCTCTGCAATTTTTGTGGTAAAAGTTTTCTAAGCAAAGGACAACTAAAAGTCCACGAAAGGAGTCACACGCTGGAAAAACCGTTCCGTTGTGACGTGTGCGATAAAGCGTTTTCCTATCGGGAGAGTCTCGTTACCCATTCGTCGCTACATACTGGAATCAAACCGTATTTATGTGAAGGATGTGGAAGTCGTTTTTCGTGCATCGGAAACCTGATCAAACATCGAAAATCACGTCCGAAAACATGCGGTCTACCTCAGTTTTGTAAAAATACTAAAATTGCTCCGAGAGCTAGTTCTAAAGTACCTGGAAGTCTGACAATGAAAGTTTCCCCAAAACCTCCACGCCAGAAGAAACCTAGAAAGTCGGAAATGTTTCCAGAAGAACACGAAACCGGCCATATCAAGGCAGAATCGGAAGTGTCGACTCCGTCTGTAATTAGGAAGACTAAATTGGAGCATATGGAAATTGAGATTCAGTCTCCAGCAACCACCGCCGATGGTCAACATTTCATTATAGATGATAACATTACGGTTGAATCGAATATTGAAATAGAGTTTATCACATCCGACGATTTACTGCCCGGCGAAATGGAAACCGATGGAATTGAATATGAgaattcggataaaaattatgaaaataatttcggcGATGAGTTAAGTTCGCAGCAAGGAGAAAATGATGATTACGATGGTCGAAACGAGACGTGGGAAAATgAGACTTACGATAAATCCTGTGAAAGTGATCATCAAATCATTTATGTGGAAAGTGAATTGGTTGAGGATAAGCCAGTCATCAAGAGTTTGGTCGTTGAAGAAGACAACAAGAACAACATAACTCTCATCGACGACATTCAAGTCGGCCGGTATGCCGAAGATTTGTCGCATCAATCTGAAATCGAGGTTGAACACTACAACGCATCTGATGAAGGAGTACAATCAAATGAATTAGATGAGCCTGAGGAGCCCGAACAATTCGAATTGTATGACGTTAAATACGAAGATGATGAAGAGGCCGAAGAGGCAGAAGCTCAACAAACACAAGAgATGAACACGACGTTGTACCGATGTGAATTATGCCCGAAAATGTACATCCTCCAGGGAGCATATAAAACTCATCTGAAAACTGAGCATGGAATGTTGAAAGTTCCAAAGGTAGAAGAAACGATTACCAAGAAAAGCAAAGTGGCAAAACCCGAGGTGGTGTGTCAGTACTGCCATAAGAAATACACCAGTTCGAATCTGTTGGAAAAACATGAGAAAGTTCACGGCGAAAATGGGACTCTAATCTACAAATGCTCTTGCTGTTCTATGTGGTTTGCGTCAACAACAGAATGTGAAAATCACCAGAACGAACTTCACAAAGACAAGCTATTTTGCAAGCCGTGCAATAAAATGTTCAAGGAACCAGATAATCTTGTCGCCCACAATCGTTACTCGCACAGCAACGTCCCACATTCGCCAAAGAAATATACATTCGTTTGTCCGAATTGCGGCCGTAACTTCTCATCCAAAGTGGCATTGTCAGATCATGAAAGATCGAACTGTGGAAATTCGCCCATATACAAGTGCAACGTTTGCCATAAGAGTTATCATAGCGCTGGTTCCTTGAAAACGCATTCAACTGTTCATTCAGGCGATCTACCACATCTTTGCAAATATTGCGGAAAGGCCTTCCGCACTCAAGGTCAAGTAAAAATTCACGAGCGCAAACACAACGGAATTAAACCATTCAAATGTGAATTCTGTGAGAAAACTTTTGCTTATCGCGAGAGTTTGCTAACACACGTCTCCATACATACGgGACTGAAGCGTTTTATGTGCCAGGCATGTGGCAGTCGATTTTCGTGTATATCGAATTTACAAGCGCATCGAAAGTCACATAAAACAACGTGCGGCATGACCCCGAATGTAACCAAACCGGTGGGGCCAATGGGTcttgaaactatttttaagATAAGTGATGTGTCAGATAGTTAA
- Protein Sequence
- MHEAKSKSTTIELLQCSLCSQTFKYPAALKKHSLTHVPKEHICRICNTAFDSESDVRTHKENVHTKLSCNSCPATFPMNEEEKLLAHMERMHNGKDRENAICADCGSQFKTQNQLKIHNMTKCGTVKQFQCDQCDSKFMTQNTLNAHKMIHLGEKKHLCNFCGKSFLSKGQLKVHERSHTLEKPFRCDVCDKAFSYRESLVTHSSLHTGIKPYLCEGCGSRFSCIGNLIKHRKSRPKTCGLPQFCKNTKIAPRASSKVPGSLTMKVSPKPPRQKKPRKSEMFPEEHETGHIKAESEVSTPSVIRKTKLEHMEIEIQSPATTADGQHFIIDDNITVESNIEIEFITSDDLLPGEMETDGIEYENSDKNYENNFGDELSSQQGENDDYDGRNETWENETYDKSCESDHQIIYVESELVEDKPVIKSLVVEEDNKNNITLIDDIQVGRYAEDLSHQSEIEVEHYNASDEGVQSNELDEPEEPEQFELYDVKYEDDEEAEEAEAQQTQEMNTTLYRCELCPKMYILQGAYKTHLKTEHGMLKVPKVEETITKKSKVAKPEVVCQYCHKKYTSSNLLEKHEKVHGENGTLIYKCSCCSMWFASTTECENHQNELHKDKLFCKPCNKMFKEPDNLVAHNRYSHSNVPHSPKKYTFVCPNCGRNFSSKVALSDHERSNCGNSPIYKCNVCHKSYHSAGSLKTHSTVHSGDLPHLCKYCGKAFRTQGQVKIHERKHNGIKPFKCEFCEKTFAYRESLLTHVSIHTGLKRFMCQACGSRFSCISNLQAHRKSHKTTCGMTPNVTKPVGPMGLETIFKISDVSDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -