Bcop003374.1
Basic Information
- Insect
- Bradysia coprophila
- Gene Symbol
- -
- Assembly
- GCA_014529535.1
- Location
- NC:15160393-15162930[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 5.8e-06 0.00025 21.2 0.4 1 23 153 175 153 175 0.98 2 11 0.00049 0.021 15.1 0.6 1 23 184 209 184 209 0.95 3 11 0.018 0.77 10.2 1.3 1 23 229 252 229 253 0.96 4 11 0.0041 0.18 12.2 8.1 1 23 258 281 258 281 0.97 5 11 0.00048 0.021 15.2 1.9 1 23 289 314 289 314 0.95 6 11 0.00089 0.039 14.3 0.7 2 23 327 348 326 348 0.93 7 11 5.8e-06 0.00025 21.2 1.0 1 23 354 376 354 376 0.97 8 11 0.0021 0.091 13.1 0.7 1 23 382 404 382 404 0.97 9 11 4.2e-06 0.00018 21.6 0.4 1 23 410 432 410 433 0.96 10 11 3e-05 0.0013 18.9 0.5 1 23 439 461 439 461 0.98 11 11 1.6e-06 6.8e-05 23.0 0.6 1 23 467 489 467 489 0.98
Sequence Information
- Coding Sequence
- ATGAGTGAAATCTTCGTAAATCGTTGCCGAGCTTGTGCCGTTCTGCAGGAATGTTCCAACAAAATGGTATTTCTATTCGACAAAAAGTTGTCTGAAATGTTCAAGGACTGCACATCGTTGGAGATAAACACAAACGACAGTCTTCCAAGTTACATATGCTTTGAATGCTTCGGACATTTgtccaatttcaacaaatttcgtcaaagtTGTATCACTTCGGATGCCTACTTTCGGGAACAGATCATAGCTGAACAGATAAAAGAGGAACCGCTAATAGGCGTTAGCGTTAAACTTGAAGAACATCCAGCAAATGAAGACTTCGAATCCGAATTGTTTGAAACTGAATATATTGACGATGTTGACGACGATTTCGAAGAGTACGATTCAGACTATACACCTCAGAATGATGTGGCATCCGCAGACGATACCAATTCGAATTCAAATACCGgtgaaaaatacatttgcgATTATTGTGGCCAAGTGTTTAGCAGGAAGAGTTACATCGGAGCGCACATGACCAAGCACAAAAATGGTCCAGCTCAGACCAGCTTCCCATGCACTGTAGAAGGTTGCAGCAAAGTTTTTAACACAAGAAAATCGATCAATAGACACAGATTAAAAGTGCACAAATTGAAAGCAGGACCACGTCCGAAGGTCACTGTCGAAAgcgagaaaatagtaaaattcaaCTGCCAGGAATGTCCCAAATGGTTTACAATGCAACTGAAATTGGATGCGCATATCCGATCGTACCATCACGGATTGAAGGGATACAAATGTGAACATTGCGAGAAAGAGTTCTGCAAATATCGATCGTACAATAGTCATTTACGAAATCGACATGGTACAGatgaaacagaaaaacattACTGCACGTACGATGGATGCGATAGAGTTTATAACGCGCAAGACTCATTGAGAAAGCACATTAAACGATTTCATTTGGGAGAAGCACCTCCACCAGTGAATCGAAAACTCATTTGTGATCAATGTGGACGATCATTCAAAAATGGATTTAGTTTGAAGGAACATAGCTATTCGCATTCTGGAATTACGCCGTTTGCGTGTAACATATGCCCGAAAAAGTTTATTTCGAATTACAAACTCAAAATTCACACCATGCGCCATATGAATGTGAAACCCTTTGAATGTCCAACGTGTGGACTACGGAAAACTACTAACAAAGAGCTGAAGGCACACCTTAATTTTCATTCGAAGGAAATAACGTATCCGTGTAAAGAATGTCCTCGCGTGTTTCCGAGTTACAGTGCAGTCAATCGGCATGTACGAATCCATCATCGTAATCATAAACCATACATTTGTCCCCATTGTGAACGCGCATTTGCAAAGGCTGAgacaatgaaaaatcatgtcATGACACATACTGGTGAGAAACCGTTTTCCTGTTCCGTCTGTGGTCATCGTTTCATTCAGTCTGTTGCTTTGAAAGCACACATGAAAGTCCATGAAAAAGGAGTGAAGTAA
- Protein Sequence
- MSEIFVNRCRACAVLQECSNKMVFLFDKKLSEMFKDCTSLEINTNDSLPSYICFECFGHLSNFNKFRQSCITSDAYFREQIIAEQIKEEPLIGVSVKLEEHPANEDFESELFETEYIDDVDDDFEEYDSDYTPQNDVASADDTNSNSNTGEKYICDYCGQVFSRKSYIGAHMTKHKNGPAQTSFPCTVEGCSKVFNTRKSINRHRLKVHKLKAGPRPKVTVESEKIVKFNCQECPKWFTMQLKLDAHIRSYHHGLKGYKCEHCEKEFCKYRSYNSHLRNRHGTDETEKHYCTYDGCDRVYNAQDSLRKHIKRFHLGEAPPPVNRKLICDQCGRSFKNGFSLKEHSYSHSGITPFACNICPKKFISNYKLKIHTMRHMNVKPFECPTCGLRKTTNKELKAHLNFHSKEITYPCKECPRVFPSYSAVNRHVRIHHRNHKPYICPHCERAFAKAETMKNHVMTHTGEKPFSCSVCGHRFIQSVALKAHMKVHEKGVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -