Bcop015856.1
Basic Information
- Insect
- Bradysia coprophila
- Gene Symbol
- -
- Assembly
- GCA_014529535.1
- Location
- NW:52560-57375[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.9 81 3.8 0.1 9 23 353 368 343 368 0.90 2 17 0.33 14 6.2 0.3 2 21 379 398 378 399 0.93 3 17 3.5 1.5e+02 3.0 0.5 2 23 441 463 440 463 0.91 4 17 0.00011 0.0047 17.2 1.4 1 23 469 491 469 491 0.95 5 17 0.00049 0.021 15.1 0.2 1 23 497 519 497 519 0.93 6 17 1.1e-06 4.9e-05 23.4 2.5 2 23 526 547 525 547 0.97 7 17 0.061 2.6 8.5 0.0 3 23 558 579 556 579 0.96 8 17 0.011 0.48 10.8 0.1 1 23 598 620 598 620 0.97 9 17 0.093 4 7.9 2.6 1 23 626 648 626 648 0.96 10 17 0.00029 0.012 15.9 2.0 1 23 661 686 661 686 0.96 11 17 0.0013 0.057 13.7 0.4 2 23 694 716 693 716 0.96 12 17 2.2e-05 0.00095 19.3 0.9 2 23 721 743 721 743 0.97 13 17 0.12 5.3 7.6 2.1 2 23 769 791 768 791 0.89 14 17 6.9e-06 0.0003 20.9 4.2 1 23 797 819 797 819 0.98 15 17 0.02 0.86 10.1 0.6 1 23 825 847 825 847 0.97 16 17 0.00025 0.011 16.0 3.4 1 23 853 875 853 875 0.98 17 17 0.00037 0.016 15.5 0.9 1 23 881 906 881 906 0.97
Sequence Information
- Coding Sequence
- ATGTCGAACGCTAAATGTGGAaaacgaaccgaaaagtcgcGGAAATGCAAATGCTGCAACACCGTAATATCAAAATCGTTTCGATTGATCTACGACGAAGAAGGCAAAGAGCTGAACATTGAATTTCTATTGCTCGACTGTGTTGGAAAGAAGGTGTCGGAAAAGAATGGCTTGGATCAAGCGATCTGCACCAAATGTCTCTTACAACTCCAGCAGAGCTACGAGTTCaagaaaaaatgtatggaggcAGGTGATAGTGAAGTCAGTGAAGCCAGTGATAATGAGAGTGAATTTATACTTTGTGACGTATCCTCTTTGAATTCGTTTAACATCGAATGTGGGGAACGTATAACAGAATTGAATGATCCAATTGTGGTGATGGATGAGGAGTTTGTGATTGACGAAACGTTTGAGGAAGAAAATACGTTCGAGTTGATCGATAGATCATCATTGGACACTAGTAATGACAGTGAGAGTGATGctgaaatcaaatttatcgAAGTTATTGATATTATCGAAGATACTGGTGCAGTAAACCCAGTCACATCTCCTCAAGTAAATGATAAATTGTCAACATCAATCACACTGCCGACTGTTAAGAagaaatttgccaaaaatGCGCCATCCCACCGCATCAAATTCAAACAAGAAATACTTGCCGATTCCAAGACGATAGACGTGGAGAAAATACGGACTTCGGACGACTTGGTCCATATACTGGAAGACGACTATCACAGCGAAAACGACTCGAATCGAAAACGTTTCACCGACATTACGGACGAATTTAAGATTCCGAAAATAAAAGTGGAAGATTTTTGCGATAACATCGAGTATTTGGATGAATCGAAACCGATCGATTTGGACGAGTACATTAAATTAGTCACGCTGATCAGCTACGACgagaagaaatgttttttgacCGAGGTCAAATGTGTGATGTGCAACAACAAGGAAGTCAAACTGAAAAGTTTCAGTGCAATCGTTCAACACATGTACCACGAGCATCATGACAGCGACTTTGAACAATTTACTTGTTTAATAAACTCCCAATGCGGTTCGTTTGCCAGCCTGGACGATCTGAAAAATCATTATGCCACCGACCATCAAGATATTGTCACGCCATCGTTGAAACTCAAATGTGCAACATGTGACACGATATTCGATTCACCGATCAAGTTCGGAAAGCATATATGCCTGGACGATTATCAGATAAAAGATTCGGAAGTAAATTTCAAGTGCTGCCTGTGTCGAAAACAGTTGGCTTCAAGAAAAAGGTTCCTATTCCACAAACAATTTCACCTCTCCAATCAGAGACCGAAATATTGCTTGGTGTGTCAGACAAAGTACGAAGACGAGAATAGCTTCTACGAGCATGTGATGTTTTCCCATGAGCAAGTATTTGAACACTTTTGTGCTTTATGTGACAAAAGTTTCTCCACCGACGCCGATCTAACCCGCCATGAGAACTCACATTCCGCTCAACGGAACTACGAATGCTTGGAATGCGGAAAAAAGTTCATCGACAGTCAAACCTTAAGCGAACACAGTGTGGTTCACCTACCCGAAAAGCCACTCAAATGTGATATTTGCGAAAAAAGTTACACGCGAAAGTCGCGACTACAGAAGCATATGAAGTCGCATACGATCTACGAGTCTTCCTCCTTCATAATATGCGAAATATGCAACGCAGCGTTCGCAGACGACATAAATGCCATAGAGCACCTTCGCACTTCACACAATACTGGCGATTCCGATGAAATTCTCTTCGGCTACGAAACGTACGACAAAGTTTatgtttgtgaattttgtgatTTAGCTTTCGGTACACCGCAAGACGTCCTTACACATCGTGAATCGCACAccgacaaattaaaatttgaatgtccCCATTGCGATAACAAATACGACACGTTCAGCAAGAAACAAACCCATCTGTTGGGCCACAAATGCCAAAATGAATCGTACCCGGTAGCCAGACATTACATATGCGATCAAGACAATTGCTTCAAATCATACATCCATTGGTCAAGCCTAACCGCTCACCGTAAAACTCGACATTTGATCAATCCGTCGATCATCAAATGCCCAGAATGTCCGGAAACATTCTATCGCAGCTGGACGTACGACTATCATAAGAAAACTGTACACGGCGAATGCGAAACGTGTCCCATCTGTAGCAAAGGATTCTATAAGAAAAAGTCGCTGGAAACGCACATGCAACGCGTTCACATTGATGATAAGAAACGATCGAATAGTAAAATGGATGCAGCCGAGGCAATGATCGACGATATTGATGGTACGATCAGTTGTAAGGAGTGTGGTAAAATATGTCCGACAAAGTACAATGCAATGTGTCACATATCAATGGTTCATTTGAAAGTTCGGAATTTCCAGTGCAACATTTGCGATAAAAgCTTCTATCAAAAATGTGATTTGAATGACCACTACCGACTGCACACGAAAGAGAAACCATTTCGTTGCCAGTACTGTCCATATTCGTCAAGAAAAAGTTCGATGATAGCGATGCATGAACGGGCACATACTAACGAACGaccATTTCAATGCCCAAGATGTCCGTGTGCGTTCAAACGGTCATACGTTTTGAAGAATCACTTAAAATATCATGATGGAGTCAAAGAATTTCAATGTTCAATCGAAACATGCGGAAAGTTATTCACTACGAACGCAGCTCTTAATTATCATTACAAGTCAAAGCACAATGATTCGACAGCGGCTAATGAAAGTGAGCCAATGATCAGTGACGATAGTCAGGTTGTCGAAACAAAATCACCATCAGTCGAAGTTCCAGCTAAACGCggtaataaaagaaaaattccgaaaatcgTCTACGTCTTGCCGGGTAAGTTGGCGTCACAACCAGAAGAGACTCAAACTAAAAAGTCTCGAACTGGAATTTCACAAATTGACGTTGAAACTTTTACTACTATGCCCATTTATATCTTGgataaataa
- Protein Sequence
- MSNAKCGKRTEKSRKCKCCNTVISKSFRLIYDEEGKELNIEFLLLDCVGKKVSEKNGLDQAICTKCLLQLQQSYEFKKKCMEAGDSEVSEASDNESEFILCDVSSLNSFNIECGERITELNDPIVVMDEEFVIDETFEEENTFELIDRSSLDTSNDSESDAEIKFIEVIDIIEDTGAVNPVTSPQVNDKLSTSITLPTVKKKFAKNAPSHRIKFKQEILADSKTIDVEKIRTSDDLVHILEDDYHSENDSNRKRFTDITDEFKIPKIKVEDFCDNIEYLDESKPIDLDEYIKLVTLISYDEKKCFLTEVKCVMCNNKEVKLKSFSAIVQHMYHEHHDSDFEQFTCLINSQCGSFASLDDLKNHYATDHQDIVTPSLKLKCATCDTIFDSPIKFGKHICLDDYQIKDSEVNFKCCLCRKQLASRKRFLFHKQFHLSNQRPKYCLVCQTKYEDENSFYEHVMFSHEQVFEHFCALCDKSFSTDADLTRHENSHSAQRNYECLECGKKFIDSQTLSEHSVVHLPEKPLKCDICEKSYTRKSRLQKHMKSHTIYESSSFIICEICNAAFADDINAIEHLRTSHNTGDSDEILFGYETYDKVYVCEFCDLAFGTPQDVLTHRESHTDKLKFECPHCDNKYDTFSKKQTHLLGHKCQNESYPVARHYICDQDNCFKSYIHWSSLTAHRKTRHLINPSIIKCPECPETFYRSWTYDYHKKTVHGECETCPICSKGFYKKKSLETHMQRVHIDDKKRSNSKMDAAEAMIDDIDGTISCKECGKICPTKYNAMCHISMVHLKVRNFQCNICDKSFYQKCDLNDHYRLHTKEKPFRCQYCPYSSRKSSMIAMHERAHTNERPFQCPRCPCAFKRSYVLKNHLKYHDGVKEFQCSIETCGKLFTTNAALNYHYKSKHNDSTAANESEPMISDDSQVVETKSPSVEVPAKRGNKRKIPKIVYVLPGKLASQPEETQTKKSRTGISQIDVETFTTMPIYILDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00246576;
- 90% Identity
- iTF_00246576;
- 80% Identity
- -