Basic Information

Insect: Bradysia coprophila
Gene Symbol: -
Assembly: GCA_014529535.1
Location: NW:5170451-5201028[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.9e-06 0.00017 21.7 1.7 1 23 292 314 292 314 0.98

2 9 3.7e-08 1.6e-06 28.1 1.6 3 23 322 342 320 342 0.98

3 9 7.5e-05 0.0033 17.7 0.5 1 23 348 370 348 370 0.98

4 9 1.5e-05 0.00064 19.9 3.8 1 23 376 398 376 398 0.99

5 9 2.8e-05 0.0012 19.0 1.7 2 23 513 534 512 534 0.96

6 9 3.6e-09 1.5e-07 31.3 1.6 1 23 540 562 540 562 0.98

7 9 0.0018 0.076 13.4 0.5 3 23 570 590 568 590 0.97

8 9 0.00012 0.0052 17.0 0.9 1 23 596 618 596 618 0.99

9 9 0.024 1 9.8 0.8 1 23 625 649 625 649 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.9e-06	0.00017	21.7	1.7	1	23	292	314	292	314	0.98
2	9	3.7e-08	1.6e-06	28.1	1.6	3	23	322	342	320	342	0.98
3	9	7.5e-05	0.0033	17.7	0.5	1	23	348	370	348	370	0.98
4	9	1.5e-05	0.00064	19.9	3.8	1	23	376	398	376	398	0.99
5	9	2.8e-05	0.0012	19.0	1.7	2	23	513	534	512	534	0.96
6	9	3.6e-09	1.5e-07	31.3	1.6	1	23	540	562	540	562	0.98
7	9	0.0018	0.076	13.4	0.5	3	23	570	590	568	590	0.97
8	9	0.00012	0.0052	17.0	0.9	1	23	596	618	596	618	0.99
9	9	0.024	1	9.8	0.8	1	23	625	649	625	649	0.95

Sequence Information

Coding Sequence: atggcaatcaatttttcagcATCATTTGCCGCCTGTCTGGCGGCACGATTAAAAGTTCCTTCGCAAATAATGTACTGTATATCGCAGGACACTGGAGCACCATATGTTTTGTACAAGGATTCGCAGGAAGCGGCAGAAAGAAGTGCTTTAGGTGGACAATGGGGAGCTGATATGTATCCGACAGTGCAACAGAGTCCACAGCAAGCACACATCACTAATCATCATGCACCACCAACTCAACAACCTCAACAATCACAACAGCAAACACCACAAAGTCCTCCAGGTGATGAACAACAGAACGAACAACCGGCACATGCCGGAGCTGGAGCACTTCCCTCTCCACCAGCGCCTAGTCCATACCCGCGAGCAAATAACAATACAACCACAGAAATGGAGGATGACGGAACGTCTATCAATCAGGTACAATCactgcaacaacaacagcatcagcaacagcaacaacagcaaaCAACGTCACAAGCAATAGCGCAACAATCAAATCAACAACAATCGTCGCCTGAACAAAACATAGACATGACACCTGAACAACAGAGTCAACAGAATTCGCagacacaacaacaacaaaccaCATCGACACAACCGGCTGGGCCGCAATGTTTTACTGAGCCACAGCCACAAACCGAACAACTAAATTACTATGCACCAAGGCATCCTGGCCAAACTTCCATGCTAGCACCACCAGGATTTCCACCGTTACACTATTTAAACAAACCTTTACTGCCTGGTATGGGAATGGATCAAAGCAACGCTCTCGAGCAATATGCAATGCCAGACCTATTACCCGGCCACAATATGCATCAAACCACACCTTCGCCTGGTTCAATGAAATCCAAAGGATCCGATTTGCGATTATTTAAGTGTCTAACATGTGGTAAAGATTTCAAGCAAAAAAGTACACTCCTGCAACATGAACGAATCCACACCGACTCACGGCCGTATGGATGTCCCGAATGTGGGAAAAGGTTTCGGCAGCAGTCTCATCTTACGCAGCATTTAAGAATCCATGCAAATGAGAAACCATTTTCTTGTGCCTACTGTCCGCGGAGCTTTAGACAACGAGCAATACTCAATCAGCACCTTAGGATCCACTCGGGTGAGAAGCCTTACGAATGTCACGAATGCGGCAAACATTTTAGACAGAAAGCCATCCTCAACCAACATGTGCGCACCCATCAAGATGTATCGCCAcatttaatattcaaaaatggTCCACATCCGACACTGTGGCCTCAAGACATGCCCTATCCACCCGACGAAGCCGAAACGAAAAACGAGCAAAATAACGGATATGCTGATGATGCCTCGCAAGGCACACCAGAATCACGAGGCTGTTTTTCGCCGGAAGGCACTATTGGCGGTCTGCAATATCCAGCTTATTTCAAAGATGCAAAAGGTGTAAGCCATTCGGTGTTTGGTGCCAATCTGGGATCGTTGCAGTACTTAAAACAAGGTTCGAAAGGTATGCTGCCCGATGTCATTCAGCATGGTCGGTCAGCTGGTATGCCTCTCTACGTGCGTTGTCCAATTTGTCAAAAAGAATTCAAACAGAAGAGCACGCTGCTTCAGCATGGTTGTATACATATTGAATCACGACCATATCCTTGTCCGGAATGCGGTAAAAGATTCAGGCAACAGTCACATTTAACGCAACATCTGCGGATCCACACGAACGAGAAACCTTATGGTTGTGTATATTGTCCAAGGTTTTTCCGGCAAAGAACCATTTTGAATCAGCACATTCGAATTCATACCGGTGAGAAGCCTTATAAGTGCGGTCAATGTGGCAAGGATTTCAGACAGAAAGCGATACTGGATCAACACACCAGAACGCACCAGGTAGGTGACCGTCCATTTTGCTGTCCAATGCCGAATTGTCGACGTCGATTTGCCACCGAACCAGAAGTGAAGAAACACATCGATAACCATATGAACCCGCATGCGTCCAAATCGCGTCGTCTGAACACAATGACAGGCGACGGCACTAAGACACCATTTCAAATGACAATGGACAAACAGTCGAATTTGATACCTCGCATGGGACCGGTCGTCAAACATGAACTGTATTTCCCGCAATGCTATGCACCACCGTTTAATCAAGCGTTCGGCGTACAACAACAACCACATAGTGGAACAACAGCGCCGACACCTTCAGCTGTTCCACCGCCGGCAGTGGTCCAGTGA
Protein Sequence: MAINFSASFAACLAARLKVPSQIMYCISQDTGAPYVLYKDSQEAAERSALGGQWGADMYPTVQQSPQQAHITNHHAPPTQQPQQSQQQTPQSPPGDEQQNEQPAHAGAGALPSPPAPSPYPRANNNTTTEMEDDGTSINQVQSLQQQQHQQQQQQQTTSQAIAQQSNQQQSSPEQNIDMTPEQQSQQNSQTQQQQTTSTQPAGPQCFTEPQPQTEQLNYYAPRHPGQTSMLAPPGFPPLHYLNKPLLPGMGMDQSNALEQYAMPDLLPGHNMHQTTPSPGSMKSKGSDLRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPFSCAYCPRSFRQRAILNQHLRIHSGEKPYECHECGKHFRQKAILNQHVRTHQDVSPHLIFKNGPHPTLWPQDMPYPPDEAETKNEQNNGYADDASQGTPESRGCFSPEGTIGGLQYPAYFKDAKGVSHSVFGANLGSLQYLKQGSKGMLPDVIQHGRSAGMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCPRFFRQRTILNQHIRIHTGEKPYKCGQCGKDFRQKAILDQHTRTHQVGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHASKSRRLNTMTGDGTKTPFQMTMDKQSNLIPRMGPVVKHELYFPQCYAPPFNQAFGVQQQPHSGTTAPTPSAVPPPAVVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00246584;
90% Identity: iTF_00246584; iTF_01266200;
80% Identity: -