Bcop004873.1
Basic Information
- Insect
- Bradysia coprophila
- Gene Symbol
- -
- Assembly
- GCA_014529535.1
- Location
- NC:1246343-1248260[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00028 0.012 15.9 1.1 2 23 149 170 148 170 0.97 2 11 0.0061 0.26 11.7 1.8 1 23 179 202 179 202 0.96 3 11 0.23 9.9 6.7 0.8 2 23 207 227 206 227 0.94 4 11 1.4e-05 0.00058 20.0 0.1 1 23 233 255 233 255 0.98 5 11 0.00036 0.016 15.5 0.1 2 23 273 294 272 294 0.97 6 11 4.9e-05 0.0021 18.3 0.6 1 23 301 324 301 324 0.95 7 11 0.00011 0.0046 17.2 1.7 2 23 333 353 333 353 0.96 8 11 4.2e-05 0.0018 18.5 0.1 1 23 362 384 362 384 0.96 9 11 1.4e-05 0.0006 20.0 0.0 3 23 393 413 392 413 0.97 10 11 1.9e-05 0.00084 19.5 0.4 1 23 419 441 419 441 0.97 11 11 0.00018 0.0077 16.5 1.9 1 23 447 470 447 470 0.97
Sequence Information
- Coding Sequence
- ATGGAATGTCAATATGATCCGCTGTTGGGTCCAAATCCAACCAGtcaaaaatttggtgaaatacGTGGCAATTACATGGGTGTACTTTCCTATCACTGTGTAATATGTCCAATTGAAGAAATGAATCACGACGAGTTTCTCGTCCATTACATGATACATTTTCGAGATTTATTTCACATCAAAGAAGAAGCACCAGAAGATGTGCCAGaatcaaatttcagaattGCTCAAGTCCCTGAAATCgaagaaattaaaatagaaattccACAAGCCAACAGTTTCGTTTCCAGTGAAATGAAACCAGAACCAAGAGATGCTGAAGATAGTTGGTCGAATGAAGATGAGGTGGACCATTCAATGGATCGTTCATTGGATGAGGTTGATCGTTCTACAGCGAAGAGGCGAGGCAGACCAAAGAATTCTGTAAAATTTACCGAGCCGAAGGAATGTGGAATTTGTGGTGAAAAGTTTGAGCTCAGGCACACATTTAAGGAACACATTCGGATCCACCAGTGTGGTCCTACTCCCAAAGTGTTTCAATGCGACATTTGCGGACGCAAGGCGTCGAAATTTAAGTatctcatcgaccattttcgcTACAAACACACCAGCAAGATAAAGTGTGAAATTTGCCAAAAGATGATACGGAAGAACTACCGGATTGCTCACCTTAAGCGGCACAATGACGAACGAAATTTTAAGTGTATGATATGCAACAAGGCTTTTGTTATGGCCGGAGATCTCACAGCGCACTTAAAACTTCATTCGACAGCCGCGACCAAGAATCCTAGTTCCAAGAAATTCGTCGAGCCACAAACGTGCAGTGTGTGCGGACAAAAATTCATCGGAATCAGTGCCTACGAACGACACATTCAGAGCCACGGTACAACGGCATCGTTATACGAATGTGATATTTGTGGCCGCCGggtaaaagaaaagaaaaacctgCTGAGCCACATGCTGTTCCGTCATTCGGGCATGCCGAAAGCGAAGGCGACATGCAACATTTGTGGTAAAACATTCAATCGAAAATATCTGAATCTGCACGTACAGAAACACAACGTCACGAATCAAAAGCCAAGTCACATCTGTCCCATTTGTGGTAAGACATTTTTGGTCAGTGCTGATTTGTCAGCGCACATACGACAGCACAATCGGACAACAGAAGCTGCACCGTGTTCTATATGTGGAAAAACATTTGCATCGGCTGCATCGCTAGCCGATCATAACCGGGTGCATTCCGGTGAAAGacCGTTTCCTTGTCCAATTTGTGGTTCAAAATTCCGTACCAGAAGTATGCTGTACGTCCATCGAACTATCCATttaacggaaaaaaatttcgcctgTGATATATGCCATATGCGATTCAAAAATCCCGCCTACGTGAAGACGCACAAGAGGAAGGTCCACGAAAAGAACAAGGTGCCCAAAAATAGTTTGTCAGTAAATGCTTCGACGTTTTCGTTGAAATAA
- Protein Sequence
- MECQYDPLLGPNPTSQKFGEIRGNYMGVLSYHCVICPIEEMNHDEFLVHYMIHFRDLFHIKEEAPEDVPESNFRIAQVPEIEEIKIEIPQANSFVSSEMKPEPRDAEDSWSNEDEVDHSMDRSLDEVDRSTAKRRGRPKNSVKFTEPKECGICGEKFELRHTFKEHIRIHQCGPTPKVFQCDICGRKASKFKYLIDHFRYKHTSKIKCEICQKMIRKNYRIAHLKRHNDERNFKCMICNKAFVMAGDLTAHLKLHSTAATKNPSSKKFVEPQTCSVCGQKFIGISAYERHIQSHGTTASLYECDICGRRVKEKKNLLSHMLFRHSGMPKAKATCNICGKTFNRKYLNLHVQKHNVTNQKPSHICPICGKTFLVSADLSAHIRQHNRTTEAAPCSICGKTFASAASLADHNRVHSGERPFPCPICGSKFRTRSMLYVHRTIHLTEKNFACDICHMRFKNPAYVKTHKRKVHEKNKVPKNSLSVNASTFSLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00246565;
- 90% Identity
- -
- 80% Identity
- -