Bcop003684.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bradysia coprophila
Gene Symbol
-
Assembly
GCA_014529535.1
Location
NC:13434649-13452414[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.35 15 6.2 0.3 2 23 228 246 227 246 0.79
2 14 1.2e-05 0.00054 20.1 4.8 1 23 252 274 252 274 0.98
3 14 0.086 3.7 8.0 5.9 1 23 280 302 280 302 0.99
4 14 8.8e-05 0.0038 17.5 2.5 1 23 308 330 308 330 0.99
5 14 5.6e-06 0.00024 21.2 0.3 2 23 336 357 335 357 0.95
6 14 6.6e-05 0.0029 17.9 0.2 1 23 363 385 363 385 0.99
7 14 0.001 0.043 14.1 0.3 2 23 393 414 392 414 0.96
8 14 6.2 2.7e+02 2.2 0.4 2 18 515 531 514 531 0.88
9 14 0.012 0.5 10.8 9.6 1 23 686 708 686 708 0.96
10 14 1.3e-05 0.00055 20.1 5.3 1 23 714 736 714 736 0.99
11 14 8.7e-07 3.7e-05 23.8 1.5 1 23 742 764 742 764 0.98
12 14 0.00036 0.016 15.5 0.1 2 23 770 791 769 791 0.94
13 14 5.8e-05 0.0025 18.0 0.5 1 23 797 819 797 819 0.98
14 14 0.00028 0.012 15.9 0.1 2 23 827 848 826 848 0.96

Sequence Information

Coding Sequence
ATGAACCAACTGGGTATTAGTTCGATGGACGACTTTAGTAAAATGTGTCGTTGCTGCGCCTCACCGAGTGATGAATTGAGTCCAATGATCCAATGTGGGAATACAGATGAAGATATACCCAGCATGTTCAAAGAATGTTTCAATCTTGAGATTGACTGTTCCAATTTACTACCAGTATCCATATGCGCGACTTGCTACAAAAAGCTTCGTTATTCGGTGCAATTCAGAGAACTGTGTGTTTCATCATTCACATTTCTCACAGAGTTTTTGGAGAAGCAGAGCATCACTCtgatcaaaaacgaaaatttcgagGATGATGCGTACACCTTTGCTTCGTGTCTCGTAAGTCATTGCAAAAAGCCTTACACATTAATCCAGAAAGTGTTTCTCACGTTTCTATTAAACCAGAATGATGATACGACGGACGAAACCATTGAAGAAACGAAGCCGAGTGTGCAGAGTCATGTCGAAGAGCGAGTCGAACCGCCGAAAGAAAAACTACGTAAGAAACTTCACAGAACGAAACTGGGTGCCAAATCAGGGAAGAAGAATAGTACGAACAAAAACCCTAGTATCGACGAAGAGGAGAAGGAGACAGACTTGACGGTGGAAGATAGCAGCAGCAATGTTGAATCAaccaaaaattcgaaaacgaaaggaaaaaaagagaaaGTCGGAAAAATGTGCCAGATTTGCGGACAAATATTCAAAAGTCTTCAGGCTCACCTGTACGTCCATGACATTTTTCCGAAGTTTGAATGCAATATCTGCCACAAGAAATTCCGACACAAAGCAAATGTTCTCAGTCATATGAAGATTCACACAAATCAAAGAGACTTTAAATGCCATCAGTGTCCCTACAAAACACAGTTTCGTACATCATATCTACGTCACCTACAAACGCACACAAACGAGCGTAACTACAAGTGTACCATCTGCGAAAAACTATTCACCCGGAAAATGACACTGGACCGGCACAAACTAACACACGATCTGCCTCGAGTTCCTTGTCCACACTGTGACAAAATGTTTACGACCAAAAAAGGACTGGTTAATCACATCGGCATTCATACCGGAGAGCGTCCattcaaatgtaaaatatgtggaatgGGATTTGTGGCGACGTCTTCGCTGTCTGTACACAGAAGAATACATAAAAAGGAGGACGATCTGTTGCGATGCAAAGAGTGCGGACTGGTTTTGACTAACTTACAGATGCTGTACAATCACATGAAAGATCATAACGTTCCATCGACAGCGGAAATGTTTCTGACAGAGGTGGAAGTGGTGACTACATCGACCAAAAAGGGAGTCGGTTTCCGGGATGAGttttgtgaaatgaaGAAGCCGAAGCCAATAACAACGCAGGACTTCAACAGAATTTGTCGCTTTTGTGCGAAGCCCAACAACGACTTGAAACCAATATTTAAAAGTGATGATTGCACCGATACTTCCTCAACAGGGGAAAATCTTTCATTTCCGTATATGTTCCAAAATACTTTAAATTTAGATGTGATTATCGACGAACGGCTACCTTTACTTATCTGTACACGATGCAGCAAAAAATTGACCAATGCAAATGATTTTCGTAAACAATGCTTGAAGAGCTACCAAAGTTTGATTGAAATCTACGAAAGCGAAGCCAAGAGAAAGTCACCGGAAACTACAGAAGTACCATCTCCTCCAGAATGTGTTCACGTTAAAACTTCGGATGATGAAGAACCAACAATAGCTccaTTCGTCGTACTAATCAAAGATGAAcacgaaaatttcaatgaacGACCATCATCGAATGACGGTTCCGTAAAAGATGGAGACTCGAATATGGAGGATCCTTGTTTCCAGTCTTCATCTCCAGGCAGTGTTGTAAAGAGTGAAAATACCAACGAAGTAAAGGAAACAAAATACAAAGGCCGCGGTCGTCCACGGAAAGGCCAAGAAGTGAAGAAAGAGAAACGTGTACCGAAACCGCACGCATTGGAAATGTGTCAAATCTGCGGCCAATTGTTCAGATGCATTAAGACACACATGTTCGTCCACGATACAAATCCTCAGTTTGAATGTCATCATTGTGGTCGAAAATTCAAGCATAAACCAAATCTGATTTGTCATGTAAAGAATCATCAAAATGTGCGGAAATTTCAATGTCCACACTGTCCGTTTAAATTTCAATACAGCACTAACTTTAAACGGCACATTCGCACCCACACTGGAGaaaaaatatttacttgcGACATTTGCCAAAAACGTTTCAGTCGTAGTGGAGGCTTGCAAAGGCATAAACTCACGCACGACATACCTCGCGTACCGTGTCCGTACTGTGAAAAGATGTTCACCACAACGAAAGGTCTGGTTAATCATGTCGGAATCCATACAGGAGAGCGACCATtcaaatgcaaaatttgcgGGGCAGCATTTGTGGCCAGCAGTAGTTTGTGTGTACACTCAAGGATAcacaaaaaggaaaatccaatTATACAATGCAAAGAGTGTGGACTGGTTGTAACGGACAATGTGATGTTATCTAACCACATGAAGGATCATCAAGAAATATCGgccgtaaaataa
Protein Sequence
MNQLGISSMDDFSKMCRCCASPSDELSPMIQCGNTDEDIPSMFKECFNLEIDCSNLLPVSICATCYKKLRYSVQFRELCVSSFTFLTEFLEKQSITLIKNENFEDDAYTFASCLVSHCKKPYTLIQKVFLTFLLNQNDDTTDETIEETKPSVQSHVEERVEPPKEKLRKKLHRTKLGAKSGKKNSTNKNPSIDEEEKETDLTVEDSSSNVESTKNSKTKGKKEKVGKMCQICGQIFKSLQAHLYVHDIFPKFECNICHKKFRHKANVLSHMKIHTNQRDFKCHQCPYKTQFRTSYLRHLQTHTNERNYKCTICEKLFTRKMTLDRHKLTHDLPRVPCPHCDKMFTTKKGLVNHIGIHTGERPFKCKICGMGFVATSSLSVHRRIHKKEDDLLRCKECGLVLTNLQMLYNHMKDHNVPSTAEMFLTEVEVVTTSTKKGVGFRDEFCEMKKPKPITTQDFNRICRFCAKPNNDLKPIFKSDDCTDTSSTGENLSFPYMFQNTLNLDVIIDERLPLLICTRCSKKLTNANDFRKQCLKSYQSLIEIYESEAKRKSPETTEVPSPPECVHVKTSDDEEPTIAPFVVLIKDEHENFNERPSSNDGSVKDGDSNMEDPCFQSSSPGSVVKSENTNEVKETKYKGRGRPRKGQEVKKEKRVPKPHALEMCQICGQLFRCIKTHMFVHDTNPQFECHHCGRKFKHKPNLICHVKNHQNVRKFQCPHCPFKFQYSTNFKRHIRTHTGEKIFTCDICQKRFSRSGGLQRHKLTHDIPRVPCPYCEKMFTTTKGLVNHVGIHTGERPFKCKICGAAFVASSSLCVHSRIHKKENPIIQCKECGLVVTDNVMLSNHMKDHQEISAVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-