Bcop012552.1
Basic Information
- Insect
- Bradysia coprophila
- Gene Symbol
- dj-1beta
- Assembly
- GCA_014529535.1
- Location
- NW:4283094-4306386[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0047 0.2 12.0 0.3 2 21 253 272 252 275 0.88 2 17 0.66 29 5.3 0.3 3 12 307 316 306 324 0.86 3 17 6.3 2.7e+02 2.2 2.1 1 20 341 360 341 362 0.94 4 17 0.00013 0.0057 16.9 0.9 1 23 388 411 388 411 0.92 5 17 0.35 15 6.1 1.9 1 23 417 439 417 439 0.79 6 17 0.018 0.78 10.2 1.4 2 23 446 468 445 468 0.95 7 17 2.9e-05 0.0012 19.0 1.2 1 23 474 496 474 496 0.99 8 17 0.063 2.7 8.5 8.2 2 23 996 1017 996 1017 0.98 9 17 1.5e-07 6.3e-06 26.2 1.1 3 23 1023 1043 1021 1043 0.97 10 17 0.026 1.1 9.7 0.4 2 23 1050 1071 1049 1071 0.96 11 17 0.00092 0.039 14.3 0.6 2 23 1085 1107 1084 1107 0.96 12 17 0.0057 0.25 11.8 0.6 1 23 1116 1139 1116 1139 0.95 13 17 0.00028 0.012 15.9 3.8 1 23 1153 1175 1153 1175 0.95 14 17 1.4e-06 6e-05 23.1 1.7 1 23 1181 1203 1181 1203 0.97 15 17 0.0002 0.0086 16.3 5.3 1 23 1209 1231 1209 1231 0.98 16 17 1.7e-06 7.1e-05 22.9 1.3 1 23 1237 1259 1237 1259 0.98 17 17 0.00062 0.027 14.8 6.2 1 23 1265 1288 1265 1288 0.96
Sequence Information
- Coding Sequence
- atgatttCTCTGAGCCAAAAAAGTCGACAATGTCTCATAGACGACATAAAGAACTTGGAGACTAAATTAGTGCAGCTACAGGATCGGTTCGATCTGATTGTAAATTGGATTCGGTCAGAATATTGCGACCTCAGTGGCTTGCCAGATTATGTGATAATCGCAGTGAGTGGTGACGGTGATCGAAAATCGTCCGATAACGACGTATTTAGGAAAAATGACCTTATTAAGGTGGAATATGACAACTTAGACGATTCCTCTCATCTTAGCGCTGATGGTGATATTGACACCGATAATACGAGCAAGAAATTGTTGGTCAAAGTCGATGAGGATATTCTGAAAGACATAGAGTCTGGGCCCGTATCCAGGCTACGAATTCAACTGGAAAAGCGGAACCTGGCTTGTCGAGACACATCGAACAGTAGttattGCAAAGCTCCGGCTGCTGTTCCCGAAGATCCCACATCATTTCCCCTGCTGATCGAGGGAGATGTTGACTTGAAATGGGAAAATGATCGGTTGATTGATAACAATTCCGCCAATGAAAACGAAACGGAAGGAGATGTGTATACTACGTTGCATGAACCTTGTGAAGACTATGAGGCGTCAAGCGGAAAGGTGAACGCAAATTTGGGTAGCGTAAAAGCCAAACGCGTGAAAAAGACTGCGAAACATGTTCAAGCCAACAAAGAGAAGGGATTAATTCTAGATGCAATTGAGTACAAAAAGATGATTGAGTCATTGCCGAAAGAGCGTTTAACCTGTGTGGTATGTAGCAAGACTTTTGCTACATCGACACAGGTTCGACGGCACGAGGTTCAGGTTCATTTAACTAAGGAGGAGCAAGGTAAAATACGGAATAGAAGCAGTTCGTTCAGTACGTTTAACGTGGTCCAAGCAAAAAACGATGTGGCTGAAATGTGTGACATATGCAACAAACCATTTAAAAACATCGAATCTCACAAAATGAACCATTTGCCGACAGAAGTCATGACTACAGTCGAAGGTAAATGGCGCCCTCACTATCGTTGCTTAAAGTGTGATTCGCTGTTTTCGGagaagaagaaatatttgaatcaCGTGACGCATGAATGTAAAAACGAAaagattcttgaaaattcaaattatgcTCAGCACGCTCAGAAGCTTCGAACAGAGAAGAATTTTCTGTGTAACCAATGCGGCCAGGCCTTCAATAGAAAACATACCCTTAAGATACACGTAATGGCCGTACATGCAAAGCGAAAAGATTTCAAGTGTAAATTTTGCGGAAAAGGCTTTGCAATCGAGTTCGTAAAAAATAACCACGAAAAGAAACATCTCGGCGCTCTAACCGTGACTTGTGAACTTTGTGGCTTCGCGTTCACGTGCAGACAGACCCTTCGGAAGCACATCAAGGGCGTACACGAGAATCGGCGACCATACCAGTGTCCGCTGTGcgataaaagttttaaaaccAACAATGCACGAAATTATCATGTCAACACACACGGCAATCCGAACGGTAGAAAACGGGGATTGAACGTAGAAATTGATCCCCTCAAAGCAGCTGCGAAACGTAGACACTGTAGCACCTGGAAAAATAATCGCGTGCCGAAGGTTACGACTGTTACGGCCACAGAAAACAACAATACTTCATCTGATGGAGCATGTACGAAAGAATCGGATgagaaatcaataaatttaatcgaTGAAAATTATGGCGACGGAACTGCTTTACCACGTTCACTGGGTTTCTTCATCGGAACGATCGGCTCGTCATCGTCTGGACTGTTTGGATCTTGCAATGGTATTTGTGGATCTTCAGCTGGCGGTGGCggcggtggtggtggtggacTGCTTATTCGTGGCGGTGTCGCAGTGAACGTGACCGTGGGAGGACTGGAAGGATCCGATCCAGTAACTTGTTCGAGGCAAGTTGTCATTGTACCGGACAAAGCTTTGTCGGATGTGTCGACGGAATCTTTCGATGGAATATTCCTTCCTGGTGGTCTAGTCGGAGCAAAGAATATGTGCGAATCGAAGCCTCTTGGTGAACTTTTGAAGAAACTTGAAAGTGAAGGCAAAGTTATTGCAGCGATCTGTGCAGCTCCAACAGCTCTACTAGCTCACTCTATTGGTTTGGGAAAATCGATCACATCTTATCCATCTACTAAGGATCAATTAGCTGGGAGCTATAAATATGTCGATGATCAAGTGATTGTACAAGATGGACAGTTGTTGACTAGTCGTGGTCCGGGTACTGCTATGGTGTTCGGATTGAAATTGGCCGAAATTCTGGTTGGCATGGAAAAATCTCAAGAAGTTGCCAAAGGCATGCTACTGAATGTCAGCAAATCGTCATTTttaaaacagtttttcttGGCACTGTTGACCCTATTGCTGACACTTGGCTACGTACAATACGAAACCGATTTCGATCAAGCCAGACAGGTCATGGaaacaaaattttgtttattattttcttgcttttctcgaatttgttcaattaaaatggtaaatttattGTGTCGAATATGTCTAAAGGGCATAACAGATGGACTGTCTTTTTGTGATACACATAAACAGTACACTCTTTCACTGGTTTATGAAGAACTCACAAACATCAAGCTTGAACTGAATGTGGAAAACCTTCCATCACGAGTATGCCGCGAGTGTGCAGATAGAATTTATTCCGCCTATGAGACTCGTAAGCTCTGCATTGAGTCGGATGCCTTTCTTCGCAAACAACTGCAAACCGTGGAGCCAAAATATAGAGATGTTGAGGAGGCAGTGGTTGAACGTCTGGAAAAGTGTGAAGATGATGTTAAGTGGGATGACATTGAACGTGACATGCATAGTGATGATTTGAGTTTGTTGGACATTGAGTTAAGCGACGATAAAAGTCCGTTTGCCGACGAGCACTTGAAAGGAGAAGATACGCAAGATGAGCATAAAACTACGAATGGTGATGTCACTTCCAGTACTCCCAATCTAAATCCGAGCAGAAAGTGTCCAACTTGTCACAAATCATTTCGATGTGAGGCGACACTTAACAAGCACATCTGCTCGCATAACAAAGTGTCCAATTGTCCTTTATGTACGAAGACCTTCTCAACCTCAAGCAACCTCAAGCGTCATATTGCTACACACAGTGATCAAGTAGAGCTCAATTGCGACAAATGTGATAGCATTTTCACGGAAACGACGGAACTATTCGAACACCTAAAAATTCATCGATTCGATAATGCGGAAAAAAGTGACGAGTTTCTGTTGGAATGTGAAATATGTAATGAGAAAACGGCATCTTATGCATCCTACAACAAACATATGAAAACGAAGCACAACATCGAATCTAAAGTTAAGGCATTCAAGTGCCGCATATGTGAGATGCGTTTTGCATCGAAGCAGGGCATGTACCGACATATTGACAATATACATGAAAATAACAGACAGAATTTGAGGAATCGCGACAAAAATTTCCTATGCACAGAATGTGGAAAGGGTTTcttcacaaattttcacttAACAACACACTCCCGGTCACATAACGGCCAGAAGCCGTATAGTTGTAAATATTGCGACAAGTCCTTTTCACAATCGTCCGGCCTTAAAATTCACACTTTCATCCACATGAATATTCGCCCGTTTTCCTGTAAAGTTTGTCATAAAACGTTTACACAGTACGGTCATGTTAGGGAGCATTTATTGACGCATACCGAGCAGAAGCCATACAGTTGTACAATTTGCAATCATTCATTTCGCGTCAAAGGTAATCTTAAGGCTCACATGCTTATACATTTAGGAAAGAAACCGCATGTTTGCGAACATTGCGGTAATCGATTTAATCAAAGTACTCATTTACGGCAGCATATtattaaaaaacataaaatcaacAGTTGA
- Protein Sequence
- MISLSQKSRQCLIDDIKNLETKLVQLQDRFDLIVNWIRSEYCDLSGLPDYVIIAVSGDGDRKSSDNDVFRKNDLIKVEYDNLDDSSHLSADGDIDTDNTSKKLLVKVDEDILKDIESGPVSRLRIQLEKRNLACRDTSNSSYCKAPAAVPEDPTSFPLLIEGDVDLKWENDRLIDNNSANENETEGDVYTTLHEPCEDYEASSGKVNANLGSVKAKRVKKTAKHVQANKEKGLILDAIEYKKMIESLPKERLTCVVCSKTFATSTQVRRHEVQVHLTKEEQGKIRNRSSSFSTFNVVQAKNDVAEMCDICNKPFKNIESHKMNHLPTEVMTTVEGKWRPHYRCLKCDSLFSEKKKYLNHVTHECKNEKILENSNYAQHAQKLRTEKNFLCNQCGQAFNRKHTLKIHVMAVHAKRKDFKCKFCGKGFAIEFVKNNHEKKHLGALTVTCELCGFAFTCRQTLRKHIKGVHENRRPYQCPLCDKSFKTNNARNYHVNTHGNPNGRKRGLNVEIDPLKAAAKRRHCSTWKNNRVPKVTTVTATENNNTSSDGACTKESDEKSINLIDENYGDGTALPRSLGFFIGTIGSSSSGLFGSCNGICGSSAGGGGGGGGGLLIRGGVAVNVTVGGLEGSDPVTCSRQVVIVPDKALSDVSTESFDGIFLPGGLVGAKNMCESKPLGELLKKLESEGKVIAAICAAPTALLAHSIGLGKSITSYPSTKDQLAGSYKYVDDQVIVQDGQLLTSRGPGTAMVFGLKLAEILVGMEKSQEVAKGMLLNVSKSSFLKQFFLALLTLLLTLGYVQYETDFDQARQVMETKFCLLFSCFSRICSIKMVNLLCRICLKGITDGLSFCDTHKQYTLSLVYEELTNIKLELNVENLPSRVCRECADRIYSAYETRKLCIESDAFLRKQLQTVEPKYRDVEEAVVERLEKCEDDVKWDDIERDMHSDDLSLLDIELSDDKSPFADEHLKGEDTQDEHKTTNGDVTSSTPNLNPSRKCPTCHKSFRCEATLNKHICSHNKVSNCPLCTKTFSTSSNLKRHIATHSDQVELNCDKCDSIFTETTELFEHLKIHRFDNAEKSDEFLLECEICNEKTASYASYNKHMKTKHNIESKVKAFKCRICEMRFASKQGMYRHIDNIHENNRQNLRNRDKNFLCTECGKGFFTNFHLTTHSRSHNGQKPYSCKYCDKSFSQSSGLKIHTFIHMNIRPFSCKVCHKTFTQYGHVREHLLTHTEQKPYSCTICNHSFRVKGNLKAHMLIHLGKKPHVCEHCGNRFNQSTHLRQHIIKKHKINS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -