Bcop014376.1
Basic Information
- Insect
- Bradysia coprophila
- Gene Symbol
- -
- Assembly
- GCA_014529535.1
- Location
- NW:8398695-8404490[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 8.1 3.5e+02 1.8 0.3 3 13 2 12 1 13 0.89 2 11 4.3e-06 0.00019 21.6 1.5 2 23 112 133 112 133 0.97 3 11 7.3e-07 3.2e-05 24.0 0.5 1 23 139 161 139 161 0.97 4 11 1.8e-07 7.6e-06 26.0 0.5 1 23 167 189 167 189 0.98 5 11 2.6e-05 0.0011 19.1 0.8 5 23 201 219 195 220 0.91 6 11 5.2e-06 0.00023 21.3 0.6 1 23 225 247 225 247 0.98 7 11 1.3e-05 0.00057 20.1 5.6 1 23 253 276 253 276 0.98 8 11 8.5e-06 0.00037 20.7 7.0 1 23 281 303 281 303 0.99 9 11 2.7e-05 0.0012 19.1 2.0 1 23 308 330 308 330 0.99 10 11 0.0015 0.063 13.6 0.1 3 23 339 362 338 362 0.91 11 11 0.026 1.1 9.7 0.2 1 23 382 407 382 407 0.93
Sequence Information
- Coding Sequence
- ATGTGCTTAAAATGTTCAgaacaatttacgacaaagGGAATTACGATTAACTCATTGAACTTTTATCAAACTCTTCAACAACAACCAGTGACGGCAACTATTACAAGTCAACAAATAAACAGTGTGACTGTTCCAATAACCGTTCAGCTGAGCGCGTCCACTACGAATCAACCAACAAATTTATCTCGTGCCACCGACATGAACACAGACTCTCAATCATCGACATCGTCTCACGATGCACCCATTAACATTAAGCAGGAAGCGATTGGCCTAGCCGACGAACTGGAAAAATCGCTACAGAACGGAGATAGTGAATTACAGGGAGAGGAAGGAACGTGCGGACTGTGTGCCAAAACATTCTCCAGAAAATCATCTCTTCTCTCACACATGAGAAATCATTCGATAGACCGTAAGTTTATCTGTTCATACTGTCAGAAAGGATTCACGCAGGCCGCCAATCTTCGCAATCATGAACGAATTCACCGAAACGAAAGGCCATATGTGTGCAATGAGTGCGGAAAGGCGTTTACTCAAGTGACCAATTTAAATAACCACACACGACTGCATACCGGCGAGAGACCATTCGTCTGTATAGAAGCCAACTGTGGCCGATCATTCGCGCAGGTAACTAATCTAAACAACCACATGAAAACTCATCATAAAATTCAACAGTACGTTTGCAACCAATGCCCGAAAAAATTTACTCAGGTCACATCATTAAATCAACATTTACTCGTTCACAGTGGCATACGCGGCTATTTTTGTCCGCATTGTCCCGATAAAACGTTTAAACAGcaaAGCCATTTATCTCAACACATGAAAACCCATGGTGTGTATCCGTTCAAATGCAACCACTgtgatgaaaagtttttccaaGTGTCCCATTTAACGCAGCATATGAAAACGCACGacgaattcaaattcaaatgcaACGTGTGCTTTAGTGCCTTCAATCAGGAATCGATGCTGCGAAAACACATGCAAAAGCATACCGATGACAGCAGGCACTTGTTATGTCCAATTCCATCTTGTAGCGAAATGTTCGCCGACAAGGACTTATTGACCAAGCATCTGGAAACGGATCATGCCAAAATCGATGCGGTCCAGCAACAAGTCCCAGTGAAGCGGGTCTACGCTGGTAAATACAATTGTTACTTTGAAGGTTGTAACGAATATTTCGATGATGCGGAAAAACTCAACGAACATTTAATCAGCACACACGCACTGCTGCACAAAGATCTGGAAGCTCGAAGTAAAATGAATCTAATGTTTCTGGAACAAATTAAGAATCAAATGACCGAACAATATGTGGCCTCACTGGGTGCCGCTGTACATCAACCGCATAACAGTATTATTATGGGTAACAAACCGAGACCGCTGAACAATGACGGACCGGCAGTGATGGTAGAATATGCAACAATAAATggtaaaatcaatgaaaatgattttaagaCGATCTACTTTTCGCAGgagaaaaaaccgaaaattcatGACGGTCAAGTAAGATTAAGTTAA
- Protein Sequence
- MCLKCSEQFTTKGITINSLNFYQTLQQQPVTATITSQQINSVTVPITVQLSASTTNQPTNLSRATDMNTDSQSSTSSHDAPINIKQEAIGLADELEKSLQNGDSELQGEEGTCGLCAKTFSRKSSLLSHMRNHSIDRKFICSYCQKGFTQAANLRNHERIHRNERPYVCNECGKAFTQVTNLNNHTRLHTGERPFVCIEANCGRSFAQVTNLNNHMKTHHKIQQYVCNQCPKKFTQVTSLNQHLLVHSGIRGYFCPHCPDKTFKQQSHLSQHMKTHGVYPFKCNHCDEKFFQVSHLTQHMKTHDEFKFKCNVCFSAFNQESMLRKHMQKHTDDSRHLLCPIPSCSEMFADKDLLTKHLETDHAKIDAVQQQVPVKRVYAGKYNCYFEGCNEYFDDAEKLNEHLISTHALLHKDLEARSKMNLMFLEQIKNQMTEQYVASLGAAVHQPHNSIIMGNKPRPLNNDGPAVMVEYATINGKINENDFKTIYFSQEKKPKIHDGQVRLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00246566;
- 90% Identity
- iTF_00246566;
- 80% Identity
- -