Bcop015480.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bradysia coprophila
Gene Symbol
-
Assembly
GCA_014529535.1
Location
NW:4842460-4848078[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 2.4 1e+02 3.5 0.9 3 23 223 242 221 242 0.91
2 21 0.00039 0.017 15.4 4.3 1 23 248 271 248 271 0.97
3 21 0.1 4.4 7.8 0.4 1 23 278 303 278 303 0.94
4 21 0.046 2 8.9 2.4 3 23 315 335 313 335 0.96
5 21 0.48 21 5.7 1.2 2 23 342 361 341 361 0.81
6 21 0.00031 0.013 15.7 0.2 1 23 367 390 367 390 0.95
7 21 1.6 69 4.1 0.7 1 23 396 421 396 421 0.91
8 21 0.0095 0.41 11.1 0.5 1 23 436 459 436 459 0.94
9 21 1.5e-06 6.4e-05 23.0 0.8 1 23 467 489 467 489 0.98
10 21 7.5e-05 0.0032 17.7 0.4 2 23 521 543 521 543 0.97
11 21 1.5 64 4.2 0.1 3 23 785 804 783 804 0.92
12 21 0.00015 0.0064 16.7 1.6 1 23 810 833 810 833 0.98
13 21 1.1 49 4.5 0.5 1 23 840 865 840 865 0.94
14 21 4e-05 0.0017 18.5 2.0 2 23 876 897 875 897 0.96
15 21 0.018 0.77 10.2 0.4 2 23 904 923 903 923 0.87
16 21 5.9e-05 0.0026 18.0 0.7 1 23 929 951 929 952 0.95
17 21 0.064 2.8 8.4 2.3 1 23 958 983 958 983 0.92
18 21 0.00088 0.038 14.3 1.3 1 23 998 1021 998 1021 0.97
19 21 1.6e-05 0.00067 19.8 0.3 1 23 1030 1052 1030 1052 0.97
20 21 6.4e-05 0.0027 17.9 4.3 1 23 1057 1079 1057 1079 0.96
21 21 0.00024 0.01 16.1 0.5 2 23 1086 1108 1086 1108 0.97

Sequence Information

Coding Sequence
ATGGACAGTCGAAATGCCGCAATTCAGAGCCGTTCGACCACTTCTTCGACTTCGATTCGAGACAAAATAGTAGATTTTGACAATCTCCGTGAAAATGTAGCCGGAAAACTGAGTCTTGAAAACTGGATGGTCCTGCCGTCGCATCGAAGTTTACACATTTTCAGTCTGAACAAAATGCTGAATGGAAATCTGTCGATACGgaacacaattttcattgacgTCAATTTGGTAGTGAAAGTATTCGGTGAGGACAACGATGAGACGCTTTTCAGTTTGAAACTGTACAGCTGGCCACAGTTACAAACTTTGATCGAACAATGCGGAGCCCAAGTTAAACGTGAAGTTGACTTGGAATTTATTGACGTTGTAGACAAGAGTGCGAACTCTGTCACGAATACTCGTGAAATCAAACATCAGCAAAAGGACACGCTACCAGATGAATTTTGTGGTATAAATACCAAGCCAGAAGCAGAAGTTTCCGATTTACATAAAACGTTCATTGAGCTCATAGAAACTTCCATATTAGAGGACGAAGCTTCGGGACACAACAGCGATTTCGTATCGCAGGGTTCATTCTTTGACGAAGCCCCTCTACTTTACTCTGAAGATGGTTATCACAATACGCCATCCACGGCGAACGAGATACATATACGCCATTCGCAGATTTGTTCAATATGCAGTAAAAGTTGCGTTGTTGGTGAGATGGATCGACACATGCAACAGCATTTCAATGGTAAACTTTATCAGTGCTATATCTGTGGTCGGGAATATCGACACACCCATGATTTGGAAAGGCACGCGAAATCGAAACACATTGCTACAAGAGACGAGTTTTTCTGTGATATATGCAAGAGCGGGAGAGTCTTCGAAACCAAAGCAAGCATCGAAGATCATATGAAGAATAGACATTGGAAAGCACCGATCAAGGAGCAAGAGATGAACTGTTCTGCCTGTAACAAAGACTTTTTAACGCTTAAACAATTCAGAACTCATATGAGACGACACGAAGAAATCAAGCGACAACCTTGTCCGATTTGCAATAAGAGCTACAGATGTCTGAGTCGGCATATAAAAGATATTCATTTCAACATCAGAAACCATGTCTGTGATATTTGCGGTTCTGCTTACAAACAGTGGAATACGTTGAAGGAGCACATAGAAATCCAACACTCGCCGCATGCAGAATTTTTCTGTGATATTTGCCAAGATGGAAAAGGTTATCGGTCGAAAGGGTACATCAAAAAACACTTTGCCAAAGTACATATAAAAGCCGGTCAGCGACGAAAAAATGCCAGGAAACCCTTCTACGAATGTAGTTTTTGCAACGTCAAACTTCCGTCGAGATACTCATTGAAGAAGCATGTCTCATTACCGCACAACGATGGAAAACATCCGATTTTTCCTTGTAAAACTTGTGACAAGACGTTCACATTGAAGAGTTCTTTGGCTGCGCACGAAAGAACACATATATGGCATATTTGCCATGAATCTGGTCAGCCCATAAATCATCCGGATTACCTCAAAAAACatctcaaacaaaaaaaagacatGAACAAGCGCAAATGCACAATATGTCCAAGGGAATATGCACGAAATTTCGATCTGAGAAATCACATGGAAAAGGTGCATGGTATTGTTATTGACTTACCTTACAAAATCCGAGAATTGAACACCTTACAAGCAATTGACATGGACAGTCGAAGTACCGCTACTCACAGCAGTTCGACCATTCTTTCGACTTCGATTCGAGACAAAATAGTAGATTTTGACAATCTCCGTGAAAATGTAGCCGGAAAACTGAGTCTTGAAAACTGGATGGTCCTGCCGTCGCATCGAAGTTTACACATTTTCAGTCTGAACCAAAAATCGAACGGAAATCTGTCGGTACGgaacacaattttcattgacgTCAATTTGGTAGTCAAAGTGTTCGGTGAAAACAACGATGACATGCTCTTCAGCTTGAAAGTGTACAGCTGGCCACAGTTACAAACTTTGATCGAACAATGCGGCGCCCAAGTTAAACGTGAAGTTGACCTGGAATTTGTTGACGTTGTGGGTAAAGCTGCGAACTCAGTCAAGAATAGCTGTCAGCAAAAGGACACGCTTGCAATTGAATGTAGTGGTATAAATACCAAGGCAGAAGCAGAAGTTTTTGATTTCCATCAACCATTGACTGAGCTCATAGAAAGCTCGATAGCAGAAAGCGAAGCTTTGGGGTACAAGAACACTTTCATATCGCAGAGTTCTTTCTTTCCCGAAGCGCCTCTCATTTATTCTGAAGATGGTTATCAGAACGCTGGTCTAATGTCATACAAGGCAAACGACAGATACATGCGCCAATCACAGATTTGTTCCATATGCAACGAAAGTTACGTTATTGGCGAAATGGATCGACACATGCAACAGCATTTCAATCGCGAATCTTATCGGTGCCATGTCTGTGGTGGGGAATTTCGAAGCTTAAGCGGTATACAAAAGCACATGAAATCGAAACACTTCACTGGGAGAGACGAATTTTTCTGTGATATATGCGAGAGTGAAATATGTTTCGAAACAGAAGCAAGCATCGAGGAACACATGAAGAGTAGACATTGCGCAGAGTCGATTAAGGAGCAAGGATTGAACTGTTCTACTTGTAACAAAGATTTTGTTACGCTTAAACAATTCAAAGCTCATATGAGACGACACGACAAAAGTATGTGGAAACCGTGTCCAATTTGCAATAAGAGTTACAGTAGTCTGAGTCGTCATATGAATGACAAGCACTTAAACATCAGAAATCATGTCTGCGAGATTTGCGGTTCTGCATACAAACAATGGGTATCATTAAAGGAGCACATAGAAACCCATCACATGCCGCATGAAGAATTTTTCTGTGATATTTGCAACAATGGGAAAGATTATCGTTCGAAGGCACACCTCAAAAAACACTTTGCCAAAGTACATGCCAAAGTTAATCAGCGACGAAAAAATCTGTGCAAACCCTTCTACGAATGCGAATTTTGCAACGAAAAACTTTCTTCGAGATACACATTAAAGACGCACCTTGCAACACGGCACAATGTTGTTGGAGACGattcaaattttccttgtAATGTGTGTGACAAGACGTTCACATTGAAAAGTTCTTTGGTCGTTCACGCAAAACTGCATACTGGAAAGCTGCATATTTGCCGCGAATGTGGTCAGTCATTCAATCATCCGAACTACCTCAGAAAACATTTGAACCGACATAAAGACATTAAGAAGCGAAAGTGCACATTGTGCGAAAAGGAATATGTGCAAAATGTTGATCTGAGACTGCACATGAAGAAAGTACATGGAGTCATTGTACCAGTACGAAAtatcaatataaaaaaaatgtaa
Protein Sequence
MDSRNAAIQSRSTTSSTSIRDKIVDFDNLRENVAGKLSLENWMVLPSHRSLHIFSLNKMLNGNLSIRNTIFIDVNLVVKVFGEDNDETLFSLKLYSWPQLQTLIEQCGAQVKREVDLEFIDVVDKSANSVTNTREIKHQQKDTLPDEFCGINTKPEAEVSDLHKTFIELIETSILEDEASGHNSDFVSQGSFFDEAPLLYSEDGYHNTPSTANEIHIRHSQICSICSKSCVVGEMDRHMQQHFNGKLYQCYICGREYRHTHDLERHAKSKHIATRDEFFCDICKSGRVFETKASIEDHMKNRHWKAPIKEQEMNCSACNKDFLTLKQFRTHMRRHEEIKRQPCPICNKSYRCLSRHIKDIHFNIRNHVCDICGSAYKQWNTLKEHIEIQHSPHAEFFCDICQDGKGYRSKGYIKKHFAKVHIKAGQRRKNARKPFYECSFCNVKLPSRYSLKKHVSLPHNDGKHPIFPCKTCDKTFTLKSSLAAHERTHIWHICHESGQPINHPDYLKKHLKQKKDMNKRKCTICPREYARNFDLRNHMEKVHGIVIDLPYKIRELNTLQAIDMDSRSTATHSSSTILSTSIRDKIVDFDNLRENVAGKLSLENWMVLPSHRSLHIFSLNQKSNGNLSVRNTIFIDVNLVVKVFGENNDDMLFSLKVYSWPQLQTLIEQCGAQVKREVDLEFVDVVGKAANSVKNSCQQKDTLAIECSGINTKAEAEVFDFHQPLTELIESSIAESEALGYKNTFISQSSFFPEAPLIYSEDGYQNAGLMSYKANDRYMRQSQICSICNESYVIGEMDRHMQQHFNRESYRCHVCGGEFRSLSGIQKHMKSKHFTGRDEFFCDICESEICFETEASIEEHMKSRHCAESIKEQGLNCSTCNKDFVTLKQFKAHMRRHDKSMWKPCPICNKSYSSLSRHMNDKHLNIRNHVCEICGSAYKQWVSLKEHIETHHMPHEEFFCDICNNGKDYRSKAHLKKHFAKVHAKVNQRRKNLCKPFYECEFCNEKLSSRYTLKTHLATRHNVVGDDSNFPCNVCDKTFTLKSSLVVHAKLHTGKLHICRECGQSFNHPNYLRKHLNRHKDIKKRKCTLCEKEYVQNVDLRLHMKKVHGVIVPVRNINIKKM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-