Basic Information

Insect: Bradysia coprophila
Gene Symbol: -
Assembly: GCA_014529535.1
Location: NW:4221262-4223830[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.03 1.3 9.5 0.6 2 23 59 80 59 80 0.94

2 14 0.0001 0.0044 17.3 0.2 1 23 86 108 86 108 0.97

3 14 2e-05 0.00085 19.5 0.5 1 23 114 136 114 136 0.98

4 14 1.1e-05 0.00046 20.3 1.4 1 23 142 164 142 164 0.99

5 14 5.8e-07 2.5e-05 24.3 1.5 1 23 178 200 178 200 0.99

6 14 0.00013 0.0055 17.0 1.5 2 23 236 257 235 257 0.96

7 14 1.1e-06 4.7e-05 23.5 0.4 1 23 263 285 263 285 0.98

8 14 9.6e-06 0.00042 20.5 1.3 1 23 291 313 291 313 0.97

9 14 6.8e-05 0.003 17.8 0.4 1 23 325 347 325 347 0.99

10 14 0.0095 0.41 11.1 5.2 1 21 355 375 355 376 0.93

11 14 0.0013 0.056 13.8 0.9 1 23 385 407 385 407 0.97

12 14 0.0001 0.0045 17.2 2.5 2 23 420 441 420 441 0.96

13 14 0.0012 0.052 13.9 1.0 1 23 450 473 450 473 0.95

14 14 0.008 0.35 11.3 0.3 2 23 479 501 478 501 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.03	1.3	9.5	0.6	2	23	59	80	59	80	0.94
2	14	0.0001	0.0044	17.3	0.2	1	23	86	108	86	108	0.97
3	14	2e-05	0.00085	19.5	0.5	1	23	114	136	114	136	0.98
4	14	1.1e-05	0.00046	20.3	1.4	1	23	142	164	142	164	0.99
5	14	5.8e-07	2.5e-05	24.3	1.5	1	23	178	200	178	200	0.99
6	14	0.00013	0.0055	17.0	1.5	2	23	236	257	235	257	0.96
7	14	1.1e-06	4.7e-05	23.5	0.4	1	23	263	285	263	285	0.98
8	14	9.6e-06	0.00042	20.5	1.3	1	23	291	313	291	313	0.97
9	14	6.8e-05	0.003	17.8	0.4	1	23	325	347	325	347	0.99
10	14	0.0095	0.41	11.1	5.2	1	21	355	375	355	376	0.93
11	14	0.0013	0.056	13.8	0.9	1	23	385	407	385	407	0.97
12	14	0.0001	0.0045	17.2	2.5	2	23	420	441	420	441	0.96
13	14	0.0012	0.052	13.9	1.0	1	23	450	473	450	473	0.95
14	14	0.008	0.35	11.3	0.3	2	23	479	501	478	501	0.96

Sequence Information

Coding Sequence: ATGAGTGCCAAAGGCACTACGATATTACAAGTGATGGTTGACGACATCGAGTCTGACTTATCGGAGGACGAAGCACCTCATTTGGAACAAGATGCAGAGAGTTCGGACGATCCAGAAAAAGAGATGTACAAAAATCTCACCGAAGAGCAATTGCGTCGAGCGCGAGAGCACAACGAGTGTTTTATATGTAACAAACGGCTCGGAAGCTTTTCGAGTTTTCGGAAGCATGTCGCTGGGCACACCGATGTCAAGAGATTCGTATGTGAACTGTGCTCAAAAGCGTTCGCAAAGTTGACGTATTTAAAGGCTCATTTAACGATTCACAATGACAATCGGATCTTCACTTGTGAGATTTGCTCGCAGAATTTTGCAACGAAGTCGAGCATTCGTGGACATATGAGGATTCATTCAGGTGACAAGCCGTACAAGTGTGATGTCTGCGGTCGTGCCTTTACCGAATCGTCGACCCGACGCAAACACCGTTTGACCCATTTCGCCGAAAAAAGGAAACAATGTCCGTCGAACTCATCTTACACTTGCGAATATTGTGGTAAAGTGCTGAACAGTCAATACTCATTCAGGAGGCACTTAAGAATCCACACGGGTGATAAGGCTGTCGAGCAGCGGCAACAGTGCCCTATTTGCAACAAACACGTCAAGTGTCTCAGGGTACACATCAAATATCACGAGAAAAGCCGGGACGTGAAATGCGACCTGTGCGATGCAATGTTCAAAGATGCGCACAGTCTAAAGAAGCACCGCGTGAAGCATACCGGCGAGAAACTTTACTCTTGTGAAGTTTGCGAGAGGAAGTTCGCTTCGTCGTCGAATTTGGCGAGCCATCGAAGGATTCATACGGGCGAGAAGAGGCACGTTTGTGACGTCTGCGATCGTCCATTCACCTTAAGTTCAACGTTGAGAAAACATAGGGCTACGCATGGCAATCCGGACGGCAGCAAAAGCGAAAAGAGTTTCAAATGTCCAGTATGCGCCAAAGAATTTGGCATGAACTACTTGCTGCAAACTCATGTTAAAACTCACACAGGGGACAGACCAAAGGATCACATTTGCGATCGGTGTTCGAAAGCCTTTCATCATCGATCGTCACTATCGAAACACAGGAAACGTCCCTGCTTTCAAGAGAAAACTGTTTTTCAATGTGACTTATGCGCTAAGGAATTCAAGGCAAACTATAGGCTCACGCGTCACTTGGAACAACACGCACGCATTCTGCAAATGCAAGGCGACGAAGAAGGAAGTTGTAAATTCTGTGGAAAGATGTTCACCACATCACACGGTCTTAGCGTTCACTTAAGCCAGCATATTGACGCAAAGGAATCGAAGACATTCCAGTGCGAGATCTGCGCGCACAAATACGCTAGCGAAGGGAATCTGAAAAAACACTTCATCAAGGCACACGGTGACAGTCTGTTGGAGTGTGATATTTGTCAGGCGAAATCGTTTACCAGCCGTGAGAAACTGGACGCACATCGAGCCAAGCATTTTGCCGAAGGCGTGGATGATGTTGGACCGTCTGGACAAGCTATTGAAATAGATTTGACATCGGTGAAGGAAGACGATAATGTGCCGACGAATTTATCGCTGTATTCTGCGTACGCCGATGCTGTTTCGAAATTCTATCGAAGTTTTTAG
Protein Sequence: MSAKGTTILQVMVDDIESDLSEDEAPHLEQDAESSDDPEKEMYKNLTEEQLRRAREHNECFICNKRLGSFSSFRKHVAGHTDVKRFVCELCSKAFAKLTYLKAHLTIHNDNRIFTCEICSQNFATKSSIRGHMRIHSGDKPYKCDVCGRAFTESSTRRKHRLTHFAEKRKQCPSNSSYTCEYCGKVLNSQYSFRRHLRIHTGDKAVEQRQQCPICNKHVKCLRVHIKYHEKSRDVKCDLCDAMFKDAHSLKKHRVKHTGEKLYSCEVCERKFASSSNLASHRRIHTGEKRHVCDVCDRPFTLSSTLRKHRATHGNPDGSKSEKSFKCPVCAKEFGMNYLLQTHVKTHTGDRPKDHICDRCSKAFHHRSSLSKHRKRPCFQEKTVFQCDLCAKEFKANYRLTRHLEQHARILQMQGDEEGSCKFCGKMFTTSHGLSVHLSQHIDAKESKTFQCEICAHKYASEGNLKKHFIKAHGDSLLECDICQAKSFTSREKLDAHRAKHFAEGVDDVGPSGQAIEIDLTSVKEDDNVPTNLSLYSAYADAVSKFYRSF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00246551;
90% Identity: iTF_00246551;
80% Identity: -