Basic Information

Insect: Bradysia coprophila
Gene Symbol: -
Assembly: GCA_014529535.1
Location: NW:8312557-8315277[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3.2e-05 0.0014 18.9 1.4 1 23 233 256 233 256 0.96

2 14 0.0024 0.1 13.0 3.0 2 23 275 296 274 296 0.97

3 14 0.002 0.086 13.2 1.4 1 23 300 322 300 322 0.97

4 14 2e-05 0.00087 19.5 0.7 1 23 328 350 328 350 0.95

5 14 0.00022 0.0097 16.2 0.3 1 23 356 379 356 379 0.94

6 14 5.4e-06 0.00023 21.3 2.3 2 23 386 407 385 408 0.94

7 14 2.8e-05 0.0012 19.0 2.7 1 23 414 437 414 437 0.98

8 14 7.6e-08 3.3e-06 27.1 1.0 1 23 443 465 443 465 0.98

9 14 0.00084 0.036 14.4 0.3 2 23 479 501 478 501 0.95

10 14 0.017 0.73 10.3 1.3 1 23 507 530 507 530 0.96

11 14 1.6e-05 0.00069 19.8 0.7 1 23 538 560 538 560 0.98

12 14 0.065 2.8 8.4 0.1 2 23 568 590 567 590 0.95

13 14 0.0096 0.41 11.1 0.9 1 23 596 619 596 619 0.93

14 14 2.8e-05 0.0012 19.0 1.4 3 23 625 646 624 646 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3.2e-05	0.0014	18.9	1.4	1	23	233	256	233	256	0.96
2	14	0.0024	0.1	13.0	3.0	2	23	275	296	274	296	0.97
3	14	0.002	0.086	13.2	1.4	1	23	300	322	300	322	0.97
4	14	2e-05	0.00087	19.5	0.7	1	23	328	350	328	350	0.95
5	14	0.00022	0.0097	16.2	0.3	1	23	356	379	356	379	0.94
6	14	5.4e-06	0.00023	21.3	2.3	2	23	386	407	385	408	0.94
7	14	2.8e-05	0.0012	19.0	2.7	1	23	414	437	414	437	0.98
8	14	7.6e-08	3.3e-06	27.1	1.0	1	23	443	465	443	465	0.98
9	14	0.00084	0.036	14.4	0.3	2	23	479	501	478	501	0.95
10	14	0.017	0.73	10.3	1.3	1	23	507	530	507	530	0.96
11	14	1.6e-05	0.00069	19.8	0.7	1	23	538	560	538	560	0.98
12	14	0.065	2.8	8.4	0.1	2	23	568	590	567	590	0.95
13	14	0.0096	0.41	11.1	0.9	1	23	596	619	596	619	0.93
14	14	2.8e-05	0.0012	19.0	1.4	3	23	625	646	624	646	0.98

Sequence Information

Coding Sequence: ATGCCTTCAAAAGAAATATTAAGACGAAACAGAATATGTATCGTTCCAGCGTGTAAAGCAGTGAATTCAGACTTTCCCgatcgaatattttttccgGTGCCAGATAGTAAAAGGGACAATTGGCTGGATATAGTTGGAGCGAAGGCCAGTTCCATTAAATCTAATAAACGTCTCTACTGttgtgaaaaacattttgatGTGCAAAGAGACATTGAAGGTTACTATTTTTACAAACATTTCGGTGGAAGAATCAAGTTAGAAAATCATGCctatccatacaaaaatttgggCGTCAATATCACAGTGCCAGCGCCCCAACTTCCAATAACGATAGAACAGCTTCCGCAGACGAAAGAATCGGATGAGGCTGGTGACGACGAATCTGTGGATCCACTTGCGACACCAACGACACCAAGTGACAGAGAGAACGAAAATGGAAGCGAAGGAGAGTCGTTTTCAGATAGCAGTGATAACGAGTTTAATGGACATTCCGATTCGGACACAGAGGATAGCAAAGTCGATAAGCAGCTACCTCGCAGTGAAGAAATCATTGTCACATCCGATGTTTACGTGCAAGACGACCACGATGATGAAGTTGATACTCCGCCGGAAATAAAGACGGAGATCGATTCAACCCCAGATCCTTTCGTCAATCTAAATTCTGATGAAATCAATTCTGGTCAAATAGATGCCAATCATAACTGCCCACAGTGCGAAAAGATCTTATCGTCGGCGAAATCATTAAAGCGACACATGAAATCCGTTCATGATGGTGAAGGGAAAATAAAGCGGGAGCCAGCAGCAGCAGGAAAAAACACAGTGACGTGTAAGGAATGCGAAAGTGTTTTTACGACCCGAGACGAGTATCACAAACACAAATCGACACACAAGAAGTCATTTGAATGCGATGTCTGCCAGAAGGTATTTCAAACACGTTTCCGTTTGTCGACACACTATGTGATGCACATGACTGTAAAGTCGTTCTTGTGCGAAGTGTGTTCAAGACCATTTGCGAGAGCCTCCACTCTGCGAAGGCACCGATACACACATGCGACAGAAAAGCGTTTTGTCTGCGAAACCTGTGGACGTCGATTTCCAGCTCAATACTTGTTGAAACTACACATTACCCAATCACACACAGATGCGGCGACCGTTATGTGTGCACAGTGTAGTAAAGTTTTCACAACCAACGCTCATTTGAAAATACACATGAACGTGCATCACAGCGAAGTCAATCCCTATAAATGTGAGATTTGTCAACTGCAATTTAACCATCCATCGGCTTTGTTACGCCACCGAAAGCGATTCCACGACCCAACGAGCTCCTTTCCATGCAAAGAATGTCCGAAAAAATTCACCCAACAAATTCTGCTGGAGCGCCATATGAAAACCCATCCCATTAAGTCAATGCAACCGCCGCAAAAAGTTATAATTCGATGCGAAGAATGTGGCATCACACTCTGTCGGCCAGACCGATTAAGAGCACACTTGGCCAAATTGCATAATCCAGCCAATCCGCACAAATGTGATACATGCCGTCAAACATTTCCAACTGAGATCCTAATGAACCAGCATGCTATGCGACTGCACGCCCCCGAGTACGAATACATTTACAAATGCTACATCTGCCCGAAGAAATACAATCAGGAGGCTGCGTTAAAGCGACATGTCAAGCTCCACACCGATCCAAAGAAACCGGTTACGTGCGAATTGTGTGGGAAGATATTAGGTCGTCCGAATCGTTTAAAGCCGCACATGAGAGCGCTCCATAGCCCGTACAATCCGTTCAAATGTGACATTTGTCTGCAAACGTTCCgggaacagaaaatgttggaCAGTCATACCACTCAAGTGCATGAACAGACAATACTGTGTCAGTATTGCGATAAAACATTCGGAAAACGGGATGGATTGCGGCAGCATCTTCGCAGGAATCACAGTGAAATGCTGTCGTTGGCGAGACGGATAAAATTGGAATGA
Protein Sequence: MPSKEILRRNRICIVPACKAVNSDFPDRIFFPVPDSKRDNWLDIVGAKASSIKSNKRLYCCEKHFDVQRDIEGYYFYKHFGGRIKLENHAYPYKNLGVNITVPAPQLPITIEQLPQTKESDEAGDDESVDPLATPTTPSDRENENGSEGESFSDSSDNEFNGHSDSDTEDSKVDKQLPRSEEIIVTSDVYVQDDHDDEVDTPPEIKTEIDSTPDPFVNLNSDEINSGQIDANHNCPQCEKILSSAKSLKRHMKSVHDGEGKIKREPAAAGKNTVTCKECESVFTTRDEYHKHKSTHKKSFECDVCQKVFQTRFRLSTHYVMHMTVKSFLCEVCSRPFARASTLRRHRYTHATEKRFVCETCGRRFPAQYLLKLHITQSHTDAATVMCAQCSKVFTTNAHLKIHMNVHHSEVNPYKCEICQLQFNHPSALLRHRKRFHDPTSSFPCKECPKKFTQQILLERHMKTHPIKSMQPPQKVIIRCEECGITLCRPDRLRAHLAKLHNPANPHKCDTCRQTFPTEILMNQHAMRLHAPEYEYIYKCYICPKKYNQEAALKRHVKLHTDPKKPVTCELCGKILGRPNRLKPHMRALHSPYNPFKCDICLQTFREQKMLDSHTTQVHEQTILCQYCDKTFGKRDGLRQHLRRNHSEMLSLARRIKLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00246550;
90% Identity: iTF_00246550;
80% Identity: -