Basic Information

Insect: Bradysia coprophila
Gene Symbol: -
Assembly: GCA_014529535.1
Location: NW:2967905-2985883[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.12 5.2 7.6 4.5 1 21 244 264 244 266 0.91

2 21 0.00064 0.028 14.7 0.5 1 23 272 295 272 295 0.97

3 21 3.2e-06 0.00014 22.0 0.6 1 23 303 326 303 326 0.98

4 21 8.7e-06 0.00038 20.6 0.7 1 23 332 355 332 355 0.95

5 21 1.7 74 4.0 1.9 2 23 401 423 400 423 0.92

6 21 0.0064 0.28 11.6 0.4 1 23 428 451 428 451 0.91

7 21 1.1e-05 0.00047 20.3 2.8 1 23 457 480 457 480 0.97

8 21 0.00013 0.0055 17.0 0.3 2 23 680 702 679 702 0.93

9 21 7.3e-05 0.0032 17.7 2.2 1 23 708 731 708 731 0.97

10 21 0.11 4.7 7.7 0.7 2 23 884 906 884 906 0.95

11 21 5.2e-05 0.0022 18.2 0.7 1 23 911 934 911 934 0.93

12 21 1.2e-05 0.0005 20.2 2.8 1 23 940 963 940 963 0.97

13 21 5.4 2.3e+02 2.4 1.2 6 23 1223 1240 1223 1240 0.98

14 21 1.8e-05 0.0008 19.6 3.0 1 23 1246 1268 1246 1268 0.97

15 21 0.038 1.6 9.2 6.1 1 23 1276 1299 1276 1299 0.96

16 21 4e-05 0.0017 18.5 0.8 1 23 1307 1330 1307 1330 0.97

17 21 1.1e-05 0.00045 20.4 0.4 1 23 1336 1359 1336 1359 0.93

18 21 0.22 9.5 6.8 2.3 2 23 1368 1389 1367 1389 0.97

19 21 0.04 1.7 9.1 1.8 2 21 1404 1423 1404 1426 0.94

20 21 0.00042 0.018 15.3 0.7 1 23 1431 1454 1431 1454 0.93

21 21 3.4e-06 0.00014 21.9 2.6 1 23 1460 1483 1460 1483 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.12	5.2	7.6	4.5	1	21	244	264	244	266	0.91
2	21	0.00064	0.028	14.7	0.5	1	23	272	295	272	295	0.97
3	21	3.2e-06	0.00014	22.0	0.6	1	23	303	326	303	326	0.98
4	21	8.7e-06	0.00038	20.6	0.7	1	23	332	355	332	355	0.95
5	21	1.7	74	4.0	1.9	2	23	401	423	400	423	0.92
6	21	0.0064	0.28	11.6	0.4	1	23	428	451	428	451	0.91
7	21	1.1e-05	0.00047	20.3	2.8	1	23	457	480	457	480	0.97
8	21	0.00013	0.0055	17.0	0.3	2	23	680	702	679	702	0.93
9	21	7.3e-05	0.0032	17.7	2.2	1	23	708	731	708	731	0.97
10	21	0.11	4.7	7.7	0.7	2	23	884	906	884	906	0.95
11	21	5.2e-05	0.0022	18.2	0.7	1	23	911	934	911	934	0.93
12	21	1.2e-05	0.0005	20.2	2.8	1	23	940	963	940	963	0.97
13	21	5.4	2.3e+02	2.4	1.2	6	23	1223	1240	1223	1240	0.98
14	21	1.8e-05	0.0008	19.6	3.0	1	23	1246	1268	1246	1268	0.97
15	21	0.038	1.6	9.2	6.1	1	23	1276	1299	1276	1299	0.96
16	21	4e-05	0.0017	18.5	0.8	1	23	1307	1330	1307	1330	0.97
17	21	1.1e-05	0.00045	20.4	0.4	1	23	1336	1359	1336	1359	0.93
18	21	0.22	9.5	6.8	2.3	2	23	1368	1389	1367	1389	0.97
19	21	0.04	1.7	9.1	1.8	2	21	1404	1423	1404	1426	0.94
20	21	0.00042	0.018	15.3	0.7	1	23	1431	1454	1431	1454	0.93
21	21	3.4e-06	0.00014	21.9	2.6	1	23	1460	1483	1460	1483	0.97

Sequence Information

Coding Sequence: ATGAATTCAAATTCGGCACAACTTTGCCGTTTATGTCTGGAAACTAGTGGCggttttgtaaatattttcgaaaagtttCAAGACTCAACCGTTGCTTCAGTTTTGGTCGAACATTTCTGGTTCCAGATTAATAAAGATGACGGTATGCCGGAATGGGTGTGTGAAATATGTTGGAGCCAAACGAGAACATTTCACCATTTCTACAAGCGACTGGAGTTACTAcatcagaattgcatgaattcGATCGTCTTGGTCAAAGTTGACGAAATAAAGCAAGAGCGAAGAAGTTTGAGTCCTATCGAGACAGCGTTGGAAGCTGGTCTTTTTGTAGGCAAATGCGAAGAAGAAACGGATATTACAATTAAGACTGACGATACGCAGACACCAAGCATGGAAAACAGTTATGACGAAGATGACGACGATAATATGGGTGTTCAAAATGAAGCAGAGCAAGCCATTGACAATGATAACGAGCCTTCACTTGATAAGCCTAGTAGATATAACTTGCTCAGTGCATATGAAATCGAGCGGCAGGACGCAGAGATTCGCAGATTTTTCACAATGAAATGCGACATTTGCAGTGACGTCGAACTCGACACtttagaaaaagtgagaaaacATTATCGCCAAGCGCACAAGAAACGTGGTCATTTGATCTGCTGTGGAAATAAGTATTACAAACGCTCCGGAATACTGGACCATATCCAGTATCATGTTAATCCAGACGCACACCGATGCGACCAGTGTGGTAAAAGTTATAGAAACAGAAAGATACTGAGTGATCACATAAAATGTCACGAACTCGCCCATGACTACACATGCAGCTTGTGTCCCAAAACTTACATATCCGTAGCAAAGCTGAACTATCACATTCGAGAAAAGCATTCCACGGATACGAGCGATAAATTTCCTTGCAACCAGTGTGACATAATttttccgACAAGGTACAAACTGACAAGACACATGAAAACCGTTCATGGCCCGTCTATAAATCACATTTGTGAAGGATGCGGCCGAGCATTCAAAAACAAACCCGATTTGAAACACCACATAGAAGTGGAACATCGAACAATACCACTGCCGAAAGCTCAATGTGACATTTGTGGTGTTTGGTTGAAGCATAAACGTCGCCTTCATCAACATTATATGAGAAACCATCAGGAAATGCAAGATGCTCAGGACGGCGATGCAAAGTTTCTCAATTGCCCgatttgtaagaaaaacgTGCAGAACAAGCGATTGTTGGACTGCCATATTCGAAATTCTCATGGCGAACGAAAACATCAGTGTACACTTTGCGACAAAGCATTCAGAAAGGCTACAATCCTAAAGGAACACATAGCAGCACTTCACACTGGTGTAGATTTGTACAGTTGTACGTACTGCGATAAAACTTTCAAATCCAGTGCGAACATGTACAATCATCGGAAGAAGGCCCATGTAGCAGAATGGGCCAGAGACAGAGCAGAAAAAGATAGCTGCAATCAAGCCGCTCCCAGCGAAACTGAGACCTGCTCCTATGGATCCCATCCCAAAAAACTTAAATCTTGCCCCCTAAAGTACAATTTTGCCAAAGTGGTGCGATTAGAGTTACGCCATCAGAACTACTTCAACTCAATCGGTTTGGTTGATGAAATAAAGCAAGAGCGATGTGTCAGTCCTGTAGAGGCAGCGGTGGAAGCTTTTCTCTTTGTAGACAAATGCGAAGAAGAAACGGATATAACAATAAAGACTGACGACATGCAGACACCAAGCATGGAAAACAGTTGTGATGAAGATGATGACGACAATAGGGGCtctcaaaGTGAAGCTAAGGGATCCTTTGACGATGATAATGAACCATCCGTTGATAAGCCTAGAAGATATAACTCGATCAGTCGATCGGAAATCGAGCGACAGGATGCAGAGATTCGTAAATTTTTCCCGATGAAATGCGATTTTTGCAGTGACGTTGATTTCGACACATTGAAGAAAATGAGGAAACATTATCGTCAAGTGCATAAAGTAGCTAAAGGATATTTGGTTTGCTGTGGAAATAAgtGTACATTGTGCGACAAGGCATTCAAAACGAGTCAGGGCTTAAAGGAACACATAGCAGCACTTCACACTGGTGCAGATTTGTACAGTTGTGCGTACTGTGATAGGACTTTCAAATCGAGAGCGAACATGTACAATCATCGTAAGAAGGTCCATTTAGCAGAGTGGACCAGAGACAAAGCAGAAAAGGAGATATGCAATCAAGAAACACCTAGTGAAACTGAAACAACAGCTAAGACAAGATTGGAGTTCCGCCATAAGAATTCCTTGAACTCAATCGTCTTGGTCAAAGTTGATGAAATAAAGCAAGAGCGAAGTGTCAGTCCTATGGGTGAAGCATTGGAAGCTGATTTAAACATAGTTAAATGTGAAGAGGAAAAGGTCATGACAATAACGACTGACACGCAGGCACTGAGCAAGTGCAAAAGTTCTGATGAAGATAGCAACGATAATAGCGGCGAtcaaaGTGAAGATGGTGAATCCACTGAAGACGAGGACAAGCTTTCCTTTGATAAGCCTAATAGAATTATCTCGCACAGTCGATCAGAAATAGAGGAACAGGACGCAGAGATTcAAATGCAGGAAGCTCAGAACGGTAACTTACAGGCTGCCAGTTGTCCGACCTGTAACAAAAAGATGCAGAGCAAACGGTTATTAGCCAGTCATATCAAATACGCTCATGGTGAACGAAATCATAAgtGTTCATTGTGCGACAAAGCATTCAAGACGAGTCAAGGCTTAAAGGAACACATAGCAGCACTTCACACAGGAGCAGATTTGTACAGCTGTACGTACTGTGATAAGACTTTCAAATCAAATGCGAACATGTACAATCATCGTAAGAAGGCTCATTTAGCAGAATGGACCAGAGACAGAGCAGAAAAGAATCAATGCAATCAAAACGCACCTAGTGAAACTGACAGACTAGCTAAAATGATGtgtTATGTTGTTTCGAATGCTCATTCCGACGAAATGAATTCGAATTCGACCCAAATATGCCGTTTATGTCTGGAAACTAGTGATGGCCTACttaacattttcgaaacgtttcAAGGCTCAACCATCGCCTCAGTTTTGGCTAAACATTTCTGGTTCCAGATTAATAAAGATGACGGTATGCCGGAATGGGTGTGTGAAATATGTTGGATCCAAACGAAAACGTTCCACCATTTCTACAAGAGATTGGAGTTCCGCCATAAGAATTGCTTGAACTCAATCGTCTTGGTCAAAGTTGATGAAATTAAGCAAGAGCGAAGTGTCAGTCCTATGGGTGAAGCATTGGAAGCTGATTTAAACATAGTTAAATGTGAAGAGGAAAAGGTCATGACAATAACGACTGACACGCAGGCACTGAGCAAGTGCAATAGTTCTGATGAAGATAGCAACGATAATAGCGGCGAtcaaagtaGTGAAGATGGTGAATCCACTGAAGACGAGGACAAGCTGTCCTTTGATAAGCCTAATAGAATTATCTCGCACAGTCGATCAGAAATAGAGAAACAGGACGCAGAGATTcgtaaatttttcagaatgAAATGCGAAATTTGCAGTGACGTCGATCTCGATACATTAAAAAGAGCGAGAAAACATTATCGTCAAGTGCACAAGACGAGCGGTTATTTGATCTGTTgcgaaaagaaatttaagtTCCGCTACAGGATGCTAGATCACGTGCGGAACCACGTTAATCCAGAAGCACACCGCTGCGAGCAATGTGGCAAAAGTTTTAAAGACAAATATGGACTGAAACTACACTCGAAAATTCACATACCACTGAATTTGCGTGGCTATAAATGTAGCTTATGTTCGAAGATTTGCACGACCGCCAAATCACTGAAATATCATGTTCAACACAAACATCCAACGGATTCGTCTGAAACATTTCCTTGCGACCAGTGTGACAAGAATTTCCAGTCAAAAATGTCACTAACCTCTCACATAAGGAACGTTCATGACTCTTCGTTGGATCACGTTTGCGAGATATGCGGTCGCGCGTTCAAACGCAATGCCAGTCTTCAAAACCACAAAGATATAGAGCATTCTACAACACCTCCGCCGAAAGTTCAGTGCGACATCTGCGGTACTTGGTTGAAACATGAACGTAATCTTTGGCACCATTTTAAAATGCACCAAGAAATGCAGGAAGCTCAGGATGGTAACTCACAGGCTGCCAGTTGTCCGATTTGTAAGAAAAAGGTGCAGAGTAAACGGTCATTAGCCAGTCATATCAGATGTGCTCATGGCGAACGAAATCATAAgtGTACACTTTGCGATAAGGCATTCAGGACGAGTCAAGGCATAAAGGAACACATGGCAGCACTTCACACTGGTGCAGATTTGTATAGTTGTGCGTATTGCGACAGGACTTTTAAATCGAATTCGAACCTGTACAATCATCGTAAGAAGGTCCATTTAGCAGAGTGGACCAGAGACAAAGCAGAAAAGGACAGATGCAATCAAGTAGCACCTAGTGAAACTGAAACCACAGCAACAATGGTGGTTGATGAATAA
Protein Sequence: MNSNSAQLCRLCLETSGGFVNIFEKFQDSTVASVLVEHFWFQINKDDGMPEWVCEICWSQTRTFHHFYKRLELLHQNCMNSIVLVKVDEIKQERRSLSPIETALEAGLFVGKCEEETDITIKTDDTQTPSMENSYDEDDDDNMGVQNEAEQAIDNDNEPSLDKPSRYNLLSAYEIERQDAEIRRFFTMKCDICSDVELDTLEKVRKHYRQAHKKRGHLICCGNKYYKRSGILDHIQYHVNPDAHRCDQCGKSYRNRKILSDHIKCHELAHDYTCSLCPKTYISVAKLNYHIREKHSTDTSDKFPCNQCDIIFPTRYKLTRHMKTVHGPSINHICEGCGRAFKNKPDLKHHIEVEHRTIPLPKAQCDICGVWLKHKRRLHQHYMRNHQEMQDAQDGDAKFLNCPICKKNVQNKRLLDCHIRNSHGERKHQCTLCDKAFRKATILKEHIAALHTGVDLYSCTYCDKTFKSSANMYNHRKKAHVAEWARDRAEKDSCNQAAPSETETCSYGSHPKKLKSCPLKYNFAKVVRLELRHQNYFNSIGLVDEIKQERCVSPVEAAVEAFLFVDKCEEETDITIKTDDMQTPSMENSCDEDDDDNRGSQSEAKGSFDDDNEPSVDKPRRYNSISRSEIERQDAEIRKFFPMKCDFCSDVDFDTLKKMRKHYRQVHKVAKGYLVCCGNKCTLCDKAFKTSQGLKEHIAALHTGADLYSCAYCDRTFKSRANMYNHRKKVHLAEWTRDKAEKEICNQETPSETETTAKTRLEFRHKNSLNSIVLVKVDEIKQERSVSPMGEALEADLNIVKCEEEKVMTITTDTQALSKCKSSDEDSNDNSGDQSEDGESTEDEDKLSFDKPNRIISHSRSEIEEQDAEIQMQEAQNGNLQAASCPTCNKKMQSKRLLASHIKYAHGERNHKCSLCDKAFKTSQGLKEHIAALHTGADLYSCTYCDKTFKSNANMYNHRKKAHLAEWTRDRAEKNQCNQNAPSETDRLAKMMCYVVSNAHSDEMNSNSTQICRLCLETSDGLLNIFETFQGSTIASVLAKHFWFQINKDDGMPEWVCEICWIQTKTFHHFYKRLEFRHKNCLNSIVLVKVDEIKQERSVSPMGEALEADLNIVKCEEEKVMTITTDTQALSKCNSSDEDSNDNSGDQSSEDGESTEDEDKLSFDKPNRIISHSRSEIEKQDAEIRKFFRMKCEICSDVDLDTLKRARKHYRQVHKTSGYLICCEKKFKFRYRMLDHVRNHVNPEAHRCEQCGKSFKDKYGLKLHSKIHIPLNLRGYKCSLCSKICTTAKSLKYHVQHKHPTDSSETFPCDQCDKNFQSKMSLTSHIRNVHDSSLDHVCEICGRAFKRNASLQNHKDIEHSTTPPPKVQCDICGTWLKHERNLWHHFKMHQEMQEAQDGNSQAASCPICKKKVQSKRSLASHIRCAHGERNHKCTLCDKAFRTSQGIKEHMAALHTGADLYSCAYCDRTFKSNSNLYNHRKKVHLAEWTRDKAEKDRCNQVAPSETETTATMVVDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -