Bcop015941.1
Basic Information
- Insect
- Bradysia coprophila
- Gene Symbol
- grau
- Assembly
- GCA_014529535.1
- Location
- NW:2932390-2940429[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 4.6 2e+02 2.6 0.2 2 23 210 234 209 234 0.92 2 26 0.00012 0.0053 17.0 0.6 1 23 266 288 266 288 0.95 3 26 0.0017 0.075 13.4 1.2 1 23 296 319 296 319 0.95 4 26 2.6e-05 0.0011 19.1 0.2 2 23 328 350 327 350 0.96 5 26 0.04 1.7 9.1 3.6 1 23 356 379 356 379 0.96 6 26 7.4 3.2e+02 2.0 0.4 2 21 386 405 386 406 0.91 7 26 0.015 0.63 10.5 0.0 3 23 418 439 416 439 0.96 8 26 3.6e-05 0.0016 18.7 2.2 1 23 444 466 444 466 0.97 9 26 0.00015 0.0063 16.8 3.2 1 23 472 495 472 495 0.97 10 26 1.2e-05 0.00052 20.2 1.9 1 23 824 846 824 846 0.96 11 26 0.0029 0.13 12.7 0.2 1 23 854 877 854 877 0.95 12 26 6.6e-05 0.0028 17.9 1.7 1 21 885 905 885 908 0.95 13 26 0.011 0.46 10.9 2.8 1 23 914 937 914 937 0.93 14 26 1.8 77 3.9 0.7 2 22 944 964 944 964 0.94 15 26 0.51 22 5.6 0.2 3 23 975 996 973 996 0.91 16 26 2.4e-05 0.001 19.2 3.0 1 23 1001 1023 1001 1023 0.97 17 26 0.0001 0.0045 17.2 2.7 1 23 1029 1052 1029 1052 0.97 18 26 0.76 33 5.1 0.3 6 23 1364 1381 1364 1381 0.97 19 26 0.00012 0.0053 17.0 0.3 1 23 1387 1409 1387 1409 0.97 20 26 0.002 0.084 13.2 1.3 1 23 1417 1440 1417 1440 0.97 21 26 0.00018 0.0078 16.5 1.3 1 23 1448 1471 1448 1471 0.96 22 26 0.0018 0.076 13.4 3.0 1 23 1477 1499 1477 1499 0.97 23 26 0.035 1.5 9.3 1.1 2 23 1508 1529 1507 1529 0.97 24 26 0.0011 0.048 14.0 0.8 3 23 1536 1557 1535 1557 0.97 25 26 0.0079 0.34 11.3 0.5 1 23 1562 1584 1562 1584 0.97 26 26 9.1e-05 0.0039 17.4 2.8 1 23 1590 1613 1590 1613 0.98
Sequence Information
- Coding Sequence
- ATGGATTCAATGTCAACAAAACTTTGTCGTTTGTGTCTCGAATCGAGCGATGaaatgttaaatattttcgaaaacccTCAAAACTCGACAATCCCATCGATTTTGATCAAACATTTCTGGTTCCAGGTTGACAAAGATGATGGCATGCCGCAGTGGCTGTGCGAAATTTGTTGGATACAAACCAAAACGTTTCACCACTTCTATAAAAGAGTGGAGATCCGACACGGAAACTATAGCAGTTCAAATGCCTTGATCAATTCAATAAAGCAAGAACGAATTGAAAGTCCAACCGAGGAGCAAATGAACCATGAATCTTACACGGACCTGTATATAGTGAAGCAGGAAGAACCAGACCCTCCAGCTCAAACACCTCATCTGTTAGAAACCAAAGAAGAAAACTGCGAGGACAATGCCTTTGGCTACAATGATGGCTACAATCTTGGCGAAAgtGAAAATTCGCAGACCTCAGACGAGGATGACCAGccgttaaataaaaaatcgacgTACTACGACATTGGAGATGTCAGCACTACATCGACACTAAATACTGAGACACAAGACTCAAGATCTATTAGGCTTTCAAAAATAGCGCAACAAGACGCTCAGATCCGTGATTTTTTCACAATGAAATGCGAAATCTGTACCGAAGACatcaaatttgaaagtttgacGAATGCCAGAGACCATTATCGCAGTGTTCACGATAAAAGTGGATATCTAATGTGTTGTGGGAACAAGTACCATCGTCGTTACCAAATATTGGGTCATATCCGCTTTCACATCAATCCAGACGCATATCAGTGTGATCAGTGTGATAGAATTTTCAAGGACCGACAAGCACTCAAAACTCACGCCGACAATCATGTGCCACTTAATTTACGTCCTCATAAATGTAGCTTATGCAACAGTAGTTTCACGAAGGCAGGTTCGCTGAGGGTTCATGTGCAAAATATTCACTTGTCGGTTACGGGTGAAATGTTGCCTTGTGAAAAATGTAGTAAGACTTTTCGATCTCCTATATCGTTGGCCTCTCACATTCGAAGTGTTCATGAGTTTTCGCTGGAGCATGTATGTGAGATATGCGCTCGTCGATTTAAGACGAAGCAACTACTCAAATGTCACATCATGTCCGAACATTCAACGACGACGAAAGCTCAGTGCGAGATGTGCGGTGCTTGGCTGAAACACGAACTGAGTCTACGTAAACACTTGAAACGGTGTCCCCAGTCGTCAAACTGTGAGCCAGTCAATTGTCCTATTTGCGACAGAGTCGTACCAAACAGACCTGCATTAAGTGGTCATATTCAGCGTGCTCATGGCACGAAAAGACACCAGTGCACATTTTGCGacaaaacattcaaaacaCCTAAAGGCTTAAAGGAGCACACAGCAATTCACACGGGCGAATATTTGTACGATTGTCAGTACTGCGACaagaaattcaaatcgaaTGCGAACATGTATTCACATCGCAAGAAGATGCACTTGGAAGAATGGACCAGAGATAGAACCAACACATTAGCGGCACAGAATAAATCGGATCAGGCTGAAACGAGGGCTGAAACGTCAGACGAATCCTCCTGGCTGAACACAGTCCATTGGATTACCCCAccattaaaattaaacaaaagcaTAATTTCGATTCCAATAGCAATGGATGCAATGTCAACAAAACTGTGCCGTCTGTGTCTCGAATCCAGCGATGAaatgttaaacatttttgaaaacccTCAAAACTCGACAATCCCATCGATTTTGATCAAACATTTCTGGTTCCAGGTTGACAAAGATGATGGCATGCCGCAGTGGCtgtgtgaaatttgttggATACAAACCAAAACGTTTCACCATTTCTATAAAAGAGTGGAGATCCGCCACGGAAACTATTGCAGGTCAAATGCCTTTCTCAAGATCAATTCAATAAAGCAGGAACGAAGTCCAAGTCCAAGTGAGGAGCAAATAGACCTGGCACAACGCATGGACTTTCAAATAGTCAAGCAGGAAGAACTAGAACCTCCAGAACAAATGCCGGATTTGGTTGTCaccaaagaagaaaattacgATTACGATACTTATCTCGATGGTTACAATGAGAACCGTTTTGGCGAAGgtGAAAATTCGCAGACCTCGGCAGAAAGTGACTCAccgttcaacaaaaaatgtaagaaccAAGACACTGCAGATTTCAGCGCCACAGCAACCGAAGAGTGTTCACTAAATACTGACACTGAAGACTCAACGTCGcataatctttcgaaaatagcGCAACAAGATGCTCAGATCCGTGATTTTTTCACTATGAAATGTGAAATCTGCACCGAAGacatcaaatttgaaacattgaGGAAAGCCAGAGATCATTACCGCAACGTTCACAATAAGAGTGGATATCTGATGTGTTGTGGGAACAAGTTTCATAGTCGCTACAGAATACTGGGTCACATCCGATTTCACATCAATCCAGAGGCATATCGATGTGATCAGTGTGACAAAAGTTTCAAGGACAAACAAGCACTCAAAACTCACACCGACAATCATGGACAACTTAATTTACGTGCTCACGAATGTAGCATATGTGGCGGTAGTTTTATGAAGGCAGCCTCATTGAAGGTTCATGTGCAAAATGTCCACTCGTCGGCTACAGGTGGAATGTTCCCCTGTGAAAAATGCAGTAAGACTTTTCGGTCTTCCACGTCGTTGATCGCTCACATTCGATGTGTTCATGAATTTTCGCTGGAACACGTATGTGACATATGCGCTCGTCGATTTAAGTCGAAGCAACGCCTCAGAAGTCATATCCTATTCAAACATTCAACGCCGACAAAAGCTCAGTGCGAGAAGTGCGGTGCTTGGCTGAAACACGAACTGAGTCTTCGGAAACACATGAAACGGTGTCCCCAGTCAAACTGTGTGCCAGTCAATTGTCCTATTTGCGAGAAAGTGTTACCAAACCGACCTGCATTAAATTGTCATATTAGTAATAACCATGGGACAAGACGTCATCAGTGCACATTTTGCGACAAAACATTCAAGACACCGAAAAGCTTAAAGGAACACACAGCAATTCACACGGGCGAATATTTGTACGATTGTCAGTACTGCGACaagaaattcaaatcgaaTGCGAACATGTATTCACATCGCAAGAAGATTCACTTGGAAGAATGGAACAGAGATAAACCCAAGGCAAACACATCAGTAGAAAAGTTGGATCAGGTTGAACCTGTAGAGGCTGAAATGACAGTGGAATCCTTCGGGATAGAAAATGAGCAAATTTTGACGTTCGGATcaaatgtcaaatttactaAATTGCATTGTTTTTCActgaataaaaacaaattcaactaCACTGCAATGGAATCGACCCAGCTTTGTCGTTTGTGCTTAGACACCAGTGACGATTTAGTGaatattttcgacaaattccaAGATTCAACAATTGCTTCGATTTTAAACAAACACTTCTGGTTCCAGGTCCATAAAAACGATGGCCTGTCTGAGTGCCTTTGCCAGATATGCTGGACCAACACAAAAacctttcacattttttacaaaagaGTCGAGCTACTTCAACAGGACTTTTGGAATTCAGTGGGGAAAGACAGTGAAATGGATTCTTCTGACTTAATAAAACGGGAACGAAGTGCTCCATTGGAACCCGATTTTGATAAAgtgaagtgtgaagaaacagAATCAAAGCTAGAAGTGATTCACATCGAAATAAGCAAAGACGACGGTTCGGGTTACAATGACGATAACAGTTGCGATCAAAATGACATGGTGCACATCTCAGACTGTGAGGACTCAATGTCGGATATAAAACCAAGCGAAAACTGCACAGAACACGAAACACCAACACCAACCGATGAATGTAAGAGTGACAACGAAGACGATGATTTGGACGAATCGTATCCTGATGCTAACGCACAAACAACTAGTCGATGTAAGAAAGATACAGCCAAAGAGGACGCACAAATACGCGAATTTTTCAGCATGGCCTGCGACATTTGCTCTGATAAATTCGAAACGTTTATCAAGGCGAAAAATCATTACCGGCTCGTTCACAATACAATCGGTTACCTTAGCTGTTGCGGAAAGAAATTCAATCGACGCGGACGTGTATTGGACCACATTTATCGTCATTTGAATCCGGACGCATACCGTTGTGATCCGTGTGGCAAACGATTTGCCGATAAATTTGCATTGAAAAATCACATCGAAAACCATGAACCGTTTACATCGCGTGCGTACAAGTGTAGCTTGTGTTCGAGTAGCTTCACGAAAGCATCAAAACTGGCTCAACATGAGCGACTGAGACACTGCTCGGAAGAAGACAAAAAGTTTCACTGTgataaatgcaacaaaaaTTTCGTGTCGAAATCGGTACTGGTGTCTCATATTCGCGGTGTTCATGAATTTGCATTCGCCCACGTTTGTGACATATGTGCTCGTGTATTCAAAAGCAAACATGTCTTCCAGAATCATATGCAGGAACATTCGACAACTACTCGACCGAAAATGCAGTGTAATGTCTGCGGTGCTTGGTTGAAACATGAGGACAGTCTTCGAAAACATCTGAAACGCCACCAGGACACGTTTGCCAATTGTCCAATCTGCAACAAAGTGCTACAGAACAAACATTCACTGGGAAATCATATCCGAAGTGTTCATGGCGAGAGGAGTCATCAGTGTACATTGTGTGCAAAGGCATTCAAGAAGGCTATCGTTTTGAAAGAACATATGGCTCTGCATACTGGCCAGGATCTGTATAAATGTCCATATTGCACAAAAACGTTCAAATCAGGGGCGAATATGCATGCACATCGAAAGAAGGCTCATTTTGAGGAATGGACCCGAGATAGATCTAAACGATTCACACCCACATCCGTTGAATAA
- Protein Sequence
- MDSMSTKLCRLCLESSDEMLNIFENPQNSTIPSILIKHFWFQVDKDDGMPQWLCEICWIQTKTFHHFYKRVEIRHGNYSSSNALINSIKQERIESPTEEQMNHESYTDLYIVKQEEPDPPAQTPHLLETKEENCEDNAFGYNDGYNLGESENSQTSDEDDQPLNKKSTYYDIGDVSTTSTLNTETQDSRSIRLSKIAQQDAQIRDFFTMKCEICTEDIKFESLTNARDHYRSVHDKSGYLMCCGNKYHRRYQILGHIRFHINPDAYQCDQCDRIFKDRQALKTHADNHVPLNLRPHKCSLCNSSFTKAGSLRVHVQNIHLSVTGEMLPCEKCSKTFRSPISLASHIRSVHEFSLEHVCEICARRFKTKQLLKCHIMSEHSTTTKAQCEMCGAWLKHELSLRKHLKRCPQSSNCEPVNCPICDRVVPNRPALSGHIQRAHGTKRHQCTFCDKTFKTPKGLKEHTAIHTGEYLYDCQYCDKKFKSNANMYSHRKKMHLEEWTRDRTNTLAAQNKSDQAETRAETSDESSWLNTVHWITPPLKLNKSIISIPIAMDAMSTKLCRLCLESSDEMLNIFENPQNSTIPSILIKHFWFQVDKDDGMPQWLCEICWIQTKTFHHFYKRVEIRHGNYCRSNAFLKINSIKQERSPSPSEEQIDLAQRMDFQIVKQEELEPPEQMPDLVVTKEENYDYDTYLDGYNENRFGEGENSQTSAESDSPFNKKCKNQDTADFSATATEECSLNTDTEDSTSHNLSKIAQQDAQIRDFFTMKCEICTEDIKFETLRKARDHYRNVHNKSGYLMCCGNKFHSRYRILGHIRFHINPEAYRCDQCDKSFKDKQALKTHTDNHGQLNLRAHECSICGGSFMKAASLKVHVQNVHSSATGGMFPCEKCSKTFRSSTSLIAHIRCVHEFSLEHVCDICARRFKSKQRLRSHILFKHSTPTKAQCEKCGAWLKHELSLRKHMKRCPQSNCVPVNCPICEKVLPNRPALNCHISNNHGTRRHQCTFCDKTFKTPKSLKEHTAIHTGEYLYDCQYCDKKFKSNANMYSHRKKIHLEEWNRDKPKANTSVEKLDQVEPVEAEMTVESFGIENEQILTFGSNVKFTKLHCFSLNKNKFNYTAMESTQLCRLCLDTSDDLVNIFDKFQDSTIASILNKHFWFQVHKNDGLSECLCQICWTNTKTFHIFYKRVELLQQDFWNSVGKDSEMDSSDLIKRERSAPLEPDFDKVKCEETESKLEVIHIEISKDDGSGYNDDNSCDQNDMVHISDCEDSMSDIKPSENCTEHETPTPTDECKSDNEDDDLDESYPDANAQTTSRCKKDTAKEDAQIREFFSMACDICSDKFETFIKAKNHYRLVHNTIGYLSCCGKKFNRRGRVLDHIYRHLNPDAYRCDPCGKRFADKFALKNHIENHEPFTSRAYKCSLCSSSFTKASKLAQHERLRHCSEEDKKFHCDKCNKNFVSKSVLVSHIRGVHEFAFAHVCDICARVFKSKHVFQNHMQEHSTTTRPKMQCNVCGAWLKHEDSLRKHLKRHQDTFANCPICNKVLQNKHSLGNHIRSVHGERSHQCTLCAKAFKKAIVLKEHMALHTGQDLYKCPYCTKTFKSGANMHAHRKKAHFEEWTRDRSKRFTPTSVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -