Bcop001697.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bradysia coprophila
Gene Symbol
-
Assembly
GCA_014529535.1
Location
NW:32711-37325[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.0064 0.28 11.6 0.0 1 23 25 47 25 47 0.98
2 19 5.7e-06 0.00025 21.2 0.4 3 23 55 75 54 75 0.98
3 19 0.012 0.53 10.7 5.5 1 23 97 119 97 119 0.98
4 19 0.00069 0.03 14.7 0.2 3 20 127 144 126 147 0.92
5 19 1.1 48 4.5 0.4 1 23 151 174 151 174 0.86
6 19 6.8e-05 0.0029 17.8 1.4 1 23 222 244 222 244 0.98
7 19 1.8e-05 0.00077 19.6 4.6 2 23 251 272 250 272 0.97
8 19 0.091 3.9 8.0 0.3 2 23 278 300 278 300 0.89
9 19 0.023 1 9.8 1.3 2 23 326 347 325 347 0.93
10 19 1.1 49 4.5 1.1 1 23 433 458 433 458 0.91
11 19 0.13 5.8 7.5 2.1 1 21 465 485 465 486 0.94
12 19 7.9 3.4e+02 1.9 0.6 2 23 496 518 495 518 0.87
13 19 0.00033 0.014 15.6 2.8 1 23 534 556 534 556 0.98
14 19 1.3e-08 5.6e-07 29.5 0.8 1 23 563 585 563 585 0.97
15 19 4.8e-07 2.1e-05 24.6 0.8 3 23 600 620 598 620 0.96
16 19 0.088 3.8 8.0 8.1 1 23 626 648 626 648 0.99
17 19 1.7e-06 7.5e-05 22.8 1.5 1 23 654 676 654 676 0.98
18 19 1.3e-07 5.6e-06 26.4 1.0 1 23 682 704 682 704 0.99
19 19 0.00019 0.0083 16.4 1.0 5 23 713 731 711 731 0.96

Sequence Information

Coding Sequence
ATGGCAGCACCGATTCCACTCGACGATGAAGAACAGCTCCTGATAAAAAGTGCAAAAATTGTCGACGATCGCTATGCATGCCCTCTGTGTCCGCGAACGTTGGCGCGACGTGAAATTCTCGTCCTGCATCTGCGTACCCATACCGGAAAGAATTTGCTGCTGTGTCCAGTCTGCGACAAAGGTTTTGCCAAGCCGTACAATTTGAGCCATCACATGATGCTCCATGATGGAAATGCAAATGTTCGAATTGACGAGACCATTGCTAAAGCCGAACAACCGGACGGTTCGTTTTGCTGtacgttttgtttgaaatcgTTCGTCGAACGGAAATCGTTTCGCTTGCATTTACGAATGCACACCAGCAACAAGCTCGAACACTGTCCAATTTGCAATCAAAGTTTCATGGACGAGGATGAGCTTATGCAGCACATGCCGGTGCATGGCGATAGTTTTCCGTGCATCGAATGTGATCAGGTGTTCAATACGTTCAAAGATCGAAAATACCACACGGAGGCTGTGCACACGGTGAAAAAGGTAAGCTCTGGAACAGGAAAATTTGCAAGCTCTAAGAGGCCACGCGCAGTGAAAGAGGTAGTGTCTGATGAGGAACACGACGATGAAGACGAACAATTGGTGAACAGTGCCGAGTTGGTTAACGGTCGTTACAATTGCAAATTCTGCGAAAAAACTCTGGCCAATCGAAGCACGTTGAAGCTGCACATCCGATTGCATCTGAAAAAGAAGTTGAAGGTCTGCACGATCTGTGATCACGGTTTCTCGAAGAACAGCCACCTGGATCGGCACATGAAGACCCACTTTCCGAAGATACCGGAATGCAAGATTTGTCACGCCACGTTCGACTCGTTACAGGAACAGAAGGCACACACAGCGGCCGCACATCGAGATGACATTCAAACGTCGACAATTCGGAAGGCAATTGTTCCTTGGACGCAACCCAATGGCAAAAAGAGCTGCGAATGTCGCATCTGCCATTCGGTCTTCGATTCGATTGCAGCTCTTCGAAAGCATTTAGACTGGCATGCTGCCACCACTGACTGGATACAGGAGGTGGACTTGAAATCGCGTCCGGAATATTCTCAAATGTTCGGTGAATCGGCGGATGATGAGTTAACGAACGAACGTTTAGCCGAAATGTTGCAGTCGAGATTGAGAGAAAACTCGACGGACGTGTCGAAAATGTACCGAATCACGAACGGCCAAGGCTGGGAATTATCGCTAACCGATTCGGAGACAGATGATAATGACGATGAGAGCAATGAACGGAAACGAATGTTCTACAATTGCGACGAATGTCCTCGGCCTCGTAGCTTTGATcgcttatacaaactgatgtgtCACATAAAGGCCGACCATCCCAACGCTTCGAAGCAATTTCAATGCACACATTGCTTGCAATGCTTCCCGAACGCAACGATTCTGGACAAACATCTGCGGCAACAGTGTCAGAACGATGGCAAAACGCTACACTGTACAATGTGCTACAGTCGATTCACATGGGCAGACAGTTTAGCCAGCCATTTCGCTGTCTATCATCAAAGTGAGACGAGGCTGCTGGAATCCAATCGAATGCGTCGTCCACATACATGCGATCAGTGTTCAAAGTCATTTTACACGCAAGAACGATTGGCTGAACATCAATTGCGCCACCTTCCCAGAGACAAGCGATTCGCGTGCGACATTTGTGATAAGCGATTCAGTCGATACGACAATTTGCGAGCTCATATGCGTAGCCACATTCCACCCCATGAACGAGAAGCTATTGCTAAGACTCATCTGTGTTCGTATTGCGGTGAAGGTTTCGCAAACTCATCCAATTTGAATGTACACATTCGGAAACACACAGGTGAACGACCATTCAAGTGTGATATTTGTAGCTCCAGATTTCGGCGGTCGTGCGATCTGACTTGTCACCGACGCACTCATACAGGTGAGAAGCCGTACCCGTGCTTGGTGTGCGGTCACAGGTTTTCCCGATCCAACAAATTAGTCCGGCACATGAGGATCCATACCGGCGAACGGCCGTACAAGTGCACGGAATGTGATCGAGCCTTTACACAGTCGAACGACTTGACCCTGCACATTCGACGGCATACCGGTGACAAACCGTTCAGCTGCCTTTGTGGCGAACGATTCATCACGAATAGTCTGCTTCAACAGCATCGTAGAACTCATGGACACTGA
Protein Sequence
MAAPIPLDDEEQLLIKSAKIVDDRYACPLCPRTLARREILVLHLRTHTGKNLLLCPVCDKGFAKPYNLSHHMMLHDGNANVRIDETIAKAEQPDGSFCCTFCLKSFVERKSFRLHLRMHTSNKLEHCPICNQSFMDEDELMQHMPVHGDSFPCIECDQVFNTFKDRKYHTEAVHTVKKVSSGTGKFASSKRPRAVKEVVSDEEHDDEDEQLVNSAELVNGRYNCKFCEKTLANRSTLKLHIRLHLKKKLKVCTICDHGFSKNSHLDRHMKTHFPKIPECKICHATFDSLQEQKAHTAAAHRDDIQTSTIRKAIVPWTQPNGKKSCECRICHSVFDSIAALRKHLDWHAATTDWIQEVDLKSRPEYSQMFGESADDELTNERLAEMLQSRLRENSTDVSKMYRITNGQGWELSLTDSETDDNDDESNERKRMFYNCDECPRPRSFDRLYKLMCHIKADHPNASKQFQCTHCLQCFPNATILDKHLRQQCQNDGKTLHCTMCYSRFTWADSLASHFAVYHQSETRLLESNRMRRPHTCDQCSKSFYTQERLAEHQLRHLPRDKRFACDICDKRFSRYDNLRAHMRSHIPPHEREAIAKTHLCSYCGEGFANSSNLNVHIRKHTGERPFKCDICSSRFRRSCDLTCHRRTHTGEKPYPCLVCGHRFSRSNKLVRHMRIHTGERPYKCTECDRAFTQSNDLTLHIRRHTGDKPFSCLCGERFITNSLLQQHRRTHGH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-