Bcop001381.1
Basic Information
- Insect
- Bradysia coprophila
- Gene Symbol
- -
- Assembly
- GCA_014529535.1
- Location
- NW:1160441-1164025[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.1e-05 0.00091 19.4 2.7 1 23 94 116 94 116 0.98 2 18 0.2 8.8 6.9 0.7 1 23 127 149 127 149 0.91 3 18 1.2e-05 0.00051 20.2 0.9 3 23 161 182 159 182 0.94 4 18 0.00022 0.0095 16.2 0.2 2 23 188 209 187 209 0.96 5 18 7.3e-07 3.1e-05 24.0 0.6 2 23 216 237 215 237 0.97 6 18 0.0013 0.054 13.8 5.0 1 23 242 264 242 264 0.97 7 18 6.3e-05 0.0027 17.9 0.8 1 23 268 290 268 290 0.97 8 18 1.3e-05 0.00054 20.1 0.3 3 23 297 318 295 318 0.95 9 18 0.00017 0.0073 16.6 1.0 1 23 324 346 324 346 0.96 10 18 3e-06 0.00013 22.1 0.2 1 23 352 374 352 374 0.98 11 18 0.00041 0.018 15.4 3.3 1 23 383 405 383 405 0.97 12 18 0.011 0.49 10.8 0.1 1 23 411 433 411 433 0.97 13 18 0.00028 0.012 15.9 3.4 1 23 439 461 439 461 0.98 14 18 0.0012 0.054 13.8 2.6 1 23 473 495 473 496 0.94 15 18 0.0011 0.049 14.0 2.3 1 23 661 683 661 683 0.96 16 18 0.061 2.6 8.5 11.7 1 23 690 712 690 712 0.97 17 18 0.12 5 7.6 6.5 1 23 718 740 718 740 0.97 18 18 0.0065 0.28 11.6 1.5 3 23 748 769 746 769 0.94
Sequence Information
- Coding Sequence
- ATGGACAATCATCAGATAAAAGCCGAACCGCCCGATGACAAATCGACCGTTAACATAGAATTTCCGGACGATGTTACCGGTGTGAAAGTTGATCCGTCGGCAGCAGTAATTATCGATGGATCCGCCGTATACATTAAATCCGAAGTAACGTTTGGTGAATACGAATACACTCCAGCCGCTCCGGCAGTATCATCTAGTGTTGCAGagataaaattaagaaatatCGAAGAATTACTGGACACAGACCCCTCACAGCCAAAGGACCAAAGTAGAAACGAATTTAAGTGTACGAGATGTGGACAATGTTTTGATCAAAAGCCCGCTTTAAAGAGACATGTTAAATGGCATTTACGGCCATTTAAAGTTGTGGAGGAGGGATTTCCTTGCGAAATTTGTGGATTGAAGTTTCTCCATGAGTCCACCGCAATCAAGCATAAGACCCTGCACACCGGTGAGCCACTTGGTGAAAAAGAGCTCGATTGCAAAGTATGCGGGAAAGTGTTTAAAAATAGGACAAAACTTCGATATCATCAGCAGGAGGTTCATGGTGAAAAAAGTGTGATGTGTGACATATGTGGGAAGACTTTTAAGTCGAAGAACGCGATACCGAACCACATGAAGATTCATTTTGATGAGAAAACTTGGGAATGCGAATATTGTGGCAAgagattcatacaaaaatcagcATTCAAAACGCATCAAGCAACGCATAGAGAGAAGCCATTTCATTGTGACGAATGCGACGCTAAATTTTCTACAAAGGAGTCATTACACAGTCACAAACTGAAACATTTGGATCCGTACGTTTGTGATACATGCGGTAAAGGATACACAAGTACAAAATCTCTCAACAACCATAAAATTTCACATGAAATCAAATCGCACCTTTGCGTAGAATGTGGTGCGAGTTTCATCAGAAAGTATGACCTGACAGTTCATCAGAGAGTAGTTCACCgcaaagaaaaacgtttctcCTGCGACGAATGTGGGATGCTCTTCTCCTCAAAAACATCACTCACCAATCACAAAGTCAGACATACCGGCGCAAAGCCTTTCAGTTGTGGAGATTGCGGAAAGACGTTTGGCTACAAGGCTGCCTTAGAAAATCACCGGCTTACGCACATGGAGATCAGCGATGATAAAAAATTCTCGTGCGATGATTGCGGAATGAAATTCAGCTTCAAGCATGTCCTGCAAAAGCACAAAGCACGGCACAGCGGAGATAAACCATTTATCTGCGTCCAATGTGGAATGGGATTCGCTGCAAAATCTGGTCTCGATTCACACAAACTAACCCATAGCGGAGAGAAGCCTTTTAGTTGCGAAGAATGTAGCTCGGCATTTACCACTAAATCTTTGCTGCACCAACACAAACGTAGTCACCGACAAAAGAAACCTGAGGACCAAGAAAAGCCTTTCGACTGTGATTTGTGTGGCTCGAAGTTTTCAGCTAGATCTTCGTTGTATCGACACAGAAGAGATcatcacaataaaaattctctCACTGGCGCAGGAAAGTCTAAGATTGTGTCTCAGACAACTGCCGCTgaagacaataaaaattctctCACTGGCGCAAGAAAGTCGCCAATTGTCTCTCAGTCAACTGGTGCTGAggacaataaaaattctacCACGAACgccggaaagtcgaaaattgtATCTGAAACACCACAACCACCTTGTGCTGAGGACAGTAATAGTGAAGACAATTGCTGGAAATTTTCAGAGACATTCAGTCGTACAATAGACCGGCCAATTAGCGATGATTGGTTCTCCGATGGAATACGTTTTGGCGAAGAGCAAAAAACAAAGCCTGTCACAATAGCCGAAGGATTACGGCCGTATCATGAGCGCAATGAAAAAACAGCAATACAGCCAGCTCAGATTCAAAAGGCTATCGTTGAAAAAGACGTAGAGAAAAAGCTTAAGAAGCCTGCCGTGAAGTACAAAAGACGTccaaaaattgtggaaaagcCGTTCGCTTGTGGTGTATgcgatgaaaaattttcatcacaaACACGTTTCAAACACCATCGACTGATTCATGAGCCTGGCCAAAACAAATATTGTTGCGACAAATGCGGTAAGACGTACAGACTGCATCATAGCTTCCAACATCACAGACGATGGCACGAGGGTAtaaaaaactttatctgcGATATTTGTGGATTTAAATGTCAACACAAGGTACACATGAAGATGCATTTGTTAAGGCACGTAGGGGACAGATCAGTCTGTTGCGATGAGTGCCCAGCgagatttgttgaaaattctgGTCTGCAATCACACAAACGGCACGTACACCGCACTTAA
- Protein Sequence
- MDNHQIKAEPPDDKSTVNIEFPDDVTGVKVDPSAAVIIDGSAVYIKSEVTFGEYEYTPAAPAVSSSVAEIKLRNIEELLDTDPSQPKDQSRNEFKCTRCGQCFDQKPALKRHVKWHLRPFKVVEEGFPCEICGLKFLHESTAIKHKTLHTGEPLGEKELDCKVCGKVFKNRTKLRYHQQEVHGEKSVMCDICGKTFKSKNAIPNHMKIHFDEKTWECEYCGKRFIQKSAFKTHQATHREKPFHCDECDAKFSTKESLHSHKLKHLDPYVCDTCGKGYTSTKSLNNHKISHEIKSHLCVECGASFIRKYDLTVHQRVVHRKEKRFSCDECGMLFSSKTSLTNHKVRHTGAKPFSCGDCGKTFGYKAALENHRLTHMEISDDKKFSCDDCGMKFSFKHVLQKHKARHSGDKPFICVQCGMGFAAKSGLDSHKLTHSGEKPFSCEECSSAFTTKSLLHQHKRSHRQKKPEDQEKPFDCDLCGSKFSARSSLYRHRRDHHNKNSLTGAGKSKIVSQTTAAEDNKNSLTGARKSPIVSQSTGAEDNKNSTTNAGKSKIVSETPQPPCAEDSNSEDNCWKFSETFSRTIDRPISDDWFSDGIRFGEEQKTKPVTIAEGLRPYHERNEKTAIQPAQIQKAIVEKDVEKKLKKPAVKYKRRPKIVEKPFACGVCDEKFSSQTRFKHHRLIHEPGQNKYCCDKCGKTYRLHHSFQHHRRWHEGIKNFICDICGFKCQHKVHMKMHLLRHVGDRSVCCDECPARFVENSGLQSHKRHVHRT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -