Basic Information

Insect: Bradysia coprophila
Gene Symbol: -
Assembly: GCA_014529535.1
Location: NW:5342759-5346829[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.0031 0.13 12.6 1.4 1 23 214 236 214 236 0.99

2 19 6.5e-06 0.00028 21.0 1.3 2 23 243 264 242 264 0.97

3 19 0.01 0.43 11.0 0.0 1 23 378 400 378 400 0.98

4 19 8.8e-07 3.8e-05 23.8 0.1 2 23 407 428 406 428 0.96

5 19 0.019 0.82 10.1 5.5 1 23 450 472 450 472 0.98

6 19 0.0011 0.046 14.0 0.2 3 20 480 497 479 500 0.92

7 19 0.00011 0.0046 17.2 1.4 1 23 573 595 573 595 0.98

8 19 2.8e-05 0.0012 19.0 4.6 2 23 602 623 601 623 0.97

9 19 0.14 6.1 7.4 0.3 2 23 629 651 629 651 0.89

10 19 0.015 0.63 10.5 0.3 2 23 677 698 676 698 0.93

11 19 1.8 77 3.9 1.1 1 23 784 809 784 809 0.91

12 19 0.29 12 6.4 1.3 1 21 816 836 816 837 0.94

13 19 0.00052 0.022 15.0 2.8 1 23 885 907 885 907 0.98

14 19 2e-08 8.7e-07 28.9 0.8 1 23 914 936 914 936 0.97

15 19 7.5e-07 3.3e-05 24.0 0.8 3 23 951 971 949 971 0.96

16 19 0.14 5.9 7.4 8.1 1 23 977 999 977 999 0.99

17 19 2.7e-06 0.00012 22.2 1.5 1 23 1005 1027 1005 1027 0.98

18 19 2e-07 8.7e-06 25.8 1.0 1 23 1033 1055 1033 1055 0.99

19 19 0.0003 0.013 15.8 1.0 5 23 1064 1082 1062 1082 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.0031	0.13	12.6	1.4	1	23	214	236	214	236	0.99
2	19	6.5e-06	0.00028	21.0	1.3	2	23	243	264	242	264	0.97
3	19	0.01	0.43	11.0	0.0	1	23	378	400	378	400	0.98
4	19	8.8e-07	3.8e-05	23.8	0.1	2	23	407	428	406	428	0.96
5	19	0.019	0.82	10.1	5.5	1	23	450	472	450	472	0.98
6	19	0.0011	0.046	14.0	0.2	3	20	480	497	479	500	0.92
7	19	0.00011	0.0046	17.2	1.4	1	23	573	595	573	595	0.98
8	19	2.8e-05	0.0012	19.0	4.6	2	23	602	623	601	623	0.97
9	19	0.14	6.1	7.4	0.3	2	23	629	651	629	651	0.89
10	19	0.015	0.63	10.5	0.3	2	23	677	698	676	698	0.93
11	19	1.8	77	3.9	1.1	1	23	784	809	784	809	0.91
12	19	0.29	12	6.4	1.3	1	21	816	836	816	837	0.94
13	19	0.00052	0.022	15.0	2.8	1	23	885	907	885	907	0.98
14	19	2e-08	8.7e-07	28.9	0.8	1	23	914	936	914	936	0.97
15	19	7.5e-07	3.3e-05	24.0	0.8	3	23	951	971	949	971	0.96
16	19	0.14	5.9	7.4	8.1	1	23	977	999	977	999	0.99
17	19	2.7e-06	0.00012	22.2	1.5	1	23	1005	1027	1005	1027	0.98
18	19	2e-07	8.7e-06	25.8	1.0	1	23	1033	1055	1033	1055	0.99
19	19	0.0003	0.013	15.8	1.0	5	23	1064	1082	1062	1082	0.96

Sequence Information

Coding Sequence: ATGGAGATTGACGTAAATCGGTCGTGTCGGTCCTGCCTGTGTGAAGGCGATGCTATCCATCCAATTGGAAAAGCAGCCAAAAGCTTCGGACCCGTGGCAAAGGATTCGTACATGTGGAATATGTCGTTGGCTGAAGTGATTATGGCATGCACCGTGGTTAATATATCACCGGACGATGGGTTACCACAGTCGGTGTGTACGGAATGCTTGCATCAAGTTCAGCAAGCCTTCCAATTCAAAGAAAAGTGCGAGGCGGCTGATGCGAAGCTACGTCACCattcaatcaacaaatcgGACGATCCGATTTCTTTCATGCCGATCAAAACCGAATCCTTTGACATGGAACGAATGTTTCATCCGGAAACGGTACTCGTCACCGAATTCCAAATGGATACGTCCGATGATGAGTCACAGACGTCGACGACTGTTGCAAACATTGACGACGATCGGCCGGTCATCAAACGTGAAACGAGCAAGAAACTACACGGCAACGATTCATCAGCAACGACGAGCAAGAAACGGCACAGCAGTGTAAGAACGGTGACAAGGAGTGCTGCAAAAGTCAAAATCGAACAACTGCTGGATGATGTCGATGAAAAGACGTTGTTGGAAGAGGCCGAAATTCGCGACGACGGACGATatcaatgtaaattttgtgCGAAAACCCTGGCCGATCGACAAACGTTTCGACTGCATATTCGGCTGCACACGGGCACAAACTTGAAACGTTGCCCGATTTGCGATCGTGGATTCGCCAAGAAGAATCACTTGGAACGACATTTGGCCACCCATGATAAGACGCACAAGTGTACATTCTGTACGAGAGCGTATCTGACGACCAACGAGTGCCAGGAccatgaaaaattgtgttacaAAACCAAGACCGAATTAGGCCAAGTGAAGAACGAAGACAAATCACACGGAGAATCAGTGGAAACAGAGGGACATGACGACGAGTATGATGCAGACGACACCAATGGCAACAACGAGAGTTTCGGACAAGCGACAAAGCGATCGAAGAAACCGGAGGGCGGCTTGAATGCTAACGAGATTCGAGTGAGGGCAGCACCGATTCCACTTGACGATGAAGAACAGCTCCTGATAAAAAGTGCAAAAATTGTCGACGATCGCTATGCATGCCCTCTGTGTCCGCGAACGTTGGCACGACGAGAAATTCTTGTCCTGCATCTGCGTACCCATACCGGAAAGAATTTGCTGCGGTGTCCGGTCTGCGACAAAGGTTTTGCCAAGCCGTACAATTTGAGCCGTCACATGATGCTCCATGACGGCAATGCAAATGTTCGAATTGACGAGACGATTGCTAAAGCCGAACAACCGGACGGTTCGTTTTGCTGtacgttttgtttgaaatcgTTCGTCGAACGGAAATCGTTTCGCTTGCATTTACGAATGCACACCAGCAACAAGCTCGAACACTGTCCGATTTGCAATCAAAGTTTCATGGACGAGGATGAGCTTATGCAGCACATGCCGGTGCATGGCGATAGTTTTCCGTGCATCGAATGTGATCAGGTGTTCAATACGTTCAAAGATCGAAAATGCCACACGGAGGCTGTGCACACGGTGAGAAAGGTAAGCTCTGCAACGGGAAAATTGGCAAGGAAACCGCGCGCAGTGAAAGAGGAAGTGTCTGATGAGGAGCACGACGACGAAGACGAACAATTGGTGAACAGTGCCGAGCTGGTTAACGGTCGGTACAATTGCAAATTCTGCGAAAAAACTCTGGCCAATCGAAGCACCCTGAAGCTGCACATCCGATTGCATCTGAAGAAGAAGTTGAAAGTCTGCACGATCTGTGATCACGGTTTCTCGAAAAACAGCCACCTGGATCGCCACATGAAGACCCACTTTCCAAAGATACCGGAATGCAAGATTTGTCACGCCACGTTCGACTCGTTGCAGGAACAGAAGGCACACACAGCGGCCGCACATCGAGATGACATTCAAACGTCGACAATTCGAAAGACAATTGTTCCGTGGACGCAACCCAATGGCAAGAAGAGCTGCGAATGTCGCATCTGCGATTCGGTTTTCGATTCGATTGCAGCTCTTCGAAAGCATCTAGACTGGCATGCCGCCACCACTGACTGGATACAGGAGGTGGACTTGAAATCGCGCCCGGAATATTCTCAAATGTTCGGTGAATCGATGGATGCTGAGTTAACGAACGAACGTTTGGCCGAAATGTTGCAGACGAGATTGAGAGAGAATTCGGCGGACGTGTTGAAAATGCATCGAATTACGAACGGCCAGGGCTGGGAATTATCGCTGACCGATTCGGAGACggatgatgatgacgacgaGAGCAACGAACGGAAACGAAAGTTCTACAATTGCGACGAATGTCCTCGGCCTCGTAGCTTTGATcgcttatacaaactgatgtgtCACATCAAGGCCGACCATCCCAACGCTTCGAAGCAATTTCAGTGCAAGCAATGCTTGCAATGCTTCCCGAACGCAACGATTCTGGACAAACATCTGCGACAGCAGTGTCAGAACGATAGCAAAACGCTGCACTGTACAATGTGCTACAGTCGATTCACATGGGCCGACAGTTTAGCCAGCCATTTCGCTGTCTATCATCAAAGTGAGACGAGGCTGCTGGAATCCAACCGAATGCGTCGTCCCCATACGTGCGATCAGTGTTCAAAGTCATTTTACACACAAGAACGATTGGCTGAACATCAATTGCGCCACCTTCCCAGAGACAAACGATTCGCGTGCGACATTTGCGATAAGCGATTCAGTCGATACGACAATTTGCGAGCTCACATGCGAAGCCACATTCCACCCCATGAACGGGAAGCTATTGCCAAGACTCATCTGTGTTCCTATTGCGGTGAAGGTTTCGCAAACTCATCCAATTTGAATGTACACATTCGGAAACACACAGGTGAACGACCATTCAAGTGTGATATTTGTAGCTCCAGATTTCGGCGGTCCTGCGATCTGACTTGTCATCGACGCACTCACACAGGTGAAAAGCCGTACCCGTGCTTGGTGTGCGGTCACCGGTTTTCCCGATCCAACAAATTGGTCCGGCACATGAGGATCCATACCGGCGAACGGCCGTACAAGTGCACGGAATGTGATCGAGCCTTTACCCAGTCGAACGATTTGACGTTGCACATTCGACGGCATACCGGCGACAAACCGTTCAGCTGCCTGTGTGGCGAACGATTCATCACGAATAGTCTGCTTCAACAGCATCGGCGGACTCATGGACACTGA
Protein Sequence: MEIDVNRSCRSCLCEGDAIHPIGKAAKSFGPVAKDSYMWNMSLAEVIMACTVVNISPDDGLPQSVCTECLHQVQQAFQFKEKCEAADAKLRHHSINKSDDPISFMPIKTESFDMERMFHPETVLVTEFQMDTSDDESQTSTTVANIDDDRPVIKRETSKKLHGNDSSATTSKKRHSSVRTVTRSAAKVKIEQLLDDVDEKTLLEEAEIRDDGRYQCKFCAKTLADRQTFRLHIRLHTGTNLKRCPICDRGFAKKNHLERHLATHDKTHKCTFCTRAYLTTNECQDHEKLCYKTKTELGQVKNEDKSHGESVETEGHDDEYDADDTNGNNESFGQATKRSKKPEGGLNANEIRVRAAPIPLDDEEQLLIKSAKIVDDRYACPLCPRTLARREILVLHLRTHTGKNLLRCPVCDKGFAKPYNLSRHMMLHDGNANVRIDETIAKAEQPDGSFCCTFCLKSFVERKSFRLHLRMHTSNKLEHCPICNQSFMDEDELMQHMPVHGDSFPCIECDQVFNTFKDRKCHTEAVHTVRKVSSATGKLARKPRAVKEEVSDEEHDDEDEQLVNSAELVNGRYNCKFCEKTLANRSTLKLHIRLHLKKKLKVCTICDHGFSKNSHLDRHMKTHFPKIPECKICHATFDSLQEQKAHTAAAHRDDIQTSTIRKTIVPWTQPNGKKSCECRICDSVFDSIAALRKHLDWHAATTDWIQEVDLKSRPEYSQMFGESMDAELTNERLAEMLQTRLRENSADVLKMHRITNGQGWELSLTDSETDDDDDESNERKRKFYNCDECPRPRSFDRLYKLMCHIKADHPNASKQFQCKQCLQCFPNATILDKHLRQQCQNDSKTLHCTMCYSRFTWADSLASHFAVYHQSETRLLESNRMRRPHTCDQCSKSFYTQERLAEHQLRHLPRDKRFACDICDKRFSRYDNLRAHMRSHIPPHEREAIAKTHLCSYCGEGFANSSNLNVHIRKHTGERPFKCDICSSRFRRSCDLTCHRRTHTGEKPYPCLVCGHRFSRSNKLVRHMRIHTGERPYKCTECDRAFTQSNDLTLHIRRHTGDKPFSCLCGERFITNSLLQQHRRTHGH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -