Basic Information

Insect: Bradysia coprophila
Gene Symbol: -
Assembly: GCA_014529535.1
Location: NW:1382619-1384891[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 5.5 2.4e+02 2.4 0.7 1 23 41 63 41 63 0.94

2 15 0.0071 0.3 11.5 3.1 2 23 116 137 115 137 0.94

3 15 0.018 0.77 10.2 0.5 1 23 144 167 144 167 0.95

4 15 1.4e-08 6.2e-07 29.4 0.9 1 23 172 194 172 194 0.97

5 15 0.00012 0.0053 17.0 1.0 1 23 200 222 200 222 0.98

6 15 9.9e-07 4.3e-05 23.6 0.2 2 23 230 251 229 251 0.96

7 15 0.0096 0.42 11.0 1.4 3 23 259 279 257 279 0.96

8 15 4.2e-06 0.00018 21.6 0.1 1 23 285 308 285 308 0.98

9 15 8e-06 0.00034 20.7 0.2 3 23 337 357 335 357 0.96

10 15 0.0042 0.18 12.2 1.9 1 23 364 387 364 387 0.96

11 15 1.6e-09 6.9e-08 32.4 0.4 1 23 392 414 392 414 0.98

12 15 0.00019 0.0083 16.4 1.0 1 23 420 442 420 442 0.98

13 15 9.8e-07 4.2e-05 23.6 0.0 2 23 450 471 449 471 0.96

14 15 0.00059 0.025 14.9 3.3 1 23 477 499 477 499 0.98

15 15 0.00026 0.011 16.0 1.2 1 23 505 528 505 528 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	5.5	2.4e+02	2.4	0.7	1	23	41	63	41	63	0.94
2	15	0.0071	0.3	11.5	3.1	2	23	116	137	115	137	0.94
3	15	0.018	0.77	10.2	0.5	1	23	144	167	144	167	0.95
4	15	1.4e-08	6.2e-07	29.4	0.9	1	23	172	194	172	194	0.97
5	15	0.00012	0.0053	17.0	1.0	1	23	200	222	200	222	0.98
6	15	9.9e-07	4.3e-05	23.6	0.2	2	23	230	251	229	251	0.96
7	15	0.0096	0.42	11.0	1.4	3	23	259	279	257	279	0.96
8	15	4.2e-06	0.00018	21.6	0.1	1	23	285	308	285	308	0.98
9	15	8e-06	0.00034	20.7	0.2	3	23	337	357	335	357	0.96
10	15	0.0042	0.18	12.2	1.9	1	23	364	387	364	387	0.96
11	15	1.6e-09	6.9e-08	32.4	0.4	1	23	392	414	392	414	0.98
12	15	0.00019	0.0083	16.4	1.0	1	23	420	442	420	442	0.98
13	15	9.8e-07	4.2e-05	23.6	0.0	2	23	450	471	449	471	0.96
14	15	0.00059	0.025	14.9	3.3	1	23	477	499	477	499	0.98
15	15	0.00026	0.011	16.0	1.2	1	23	505	528	505	528	0.97

Sequence Information

Coding Sequence: ATGAGTTCGGATCTCCTTGGAACGATGGATTCACAGTCAAACGATCCGTTGACACTAGTCGAATTAAATGAAAGTCAAAAATTTGcggaaattttctgcaacttTGAGGGAACATTAACGTTCCAATGTGTCTTCTGTCCATCACAAATGAAGAATTTCACCGAATTCAACGTTCACTACATCATTCACTTTAGGGAAGTGTTCATCGTTAAACGTGAAGATGAGCCTTGCGTTTTTGAGCCGGATATCGGAATCGATGAAGTGAAACAGGAAGTAAAACCAGAACTAAGTCGATTAGAAATGGGCCATGAAACTAGTGGCGAACAACACTGGCATGATCAACTACATTGCACTAAGTGcaacaaaacatttgaatCGCAGCTCAGTTTCGACCGACATGTCGAGAATCATGTATTGTTTCCGGAAAGCTTTAGCTGTGACATCTGTGGCAGCAatataaagaagaaaaaggaTTTGCTGGGACACATGAAGGACAAGCACAGTGGCATCAAGCATCCGTGTACGATTTGTGGCAAGGCATTCAATCGTTCTTCCTACCTAACGGTACACATGCGAATTCACCAAGACATCAGACCATTCAAATGTACAGATTGCGGTCATGCGTTCATTACGGCAGGAGCACTATCGTTTCACATGAAGAAACACAACAATACAATGCCGCAGTGTCCGTGTCCCTACTGCGGTAAAGTGTTTGATCGATCTGGATCGCTTGCTGAACATGTTCGTTTACATACCGGTCAGAAACCTTTTGGATGTGGCATTTGCGCGGTGAATTTCCGGACAAAGAGACATTTGCGGGAGCACAAAGCATCGCATATAACCGTGAAAGAGTATCCCTGTGATAAGTGCGGCGAGACCTTTGAAAAATCGTCCGAAGTAGTTGCACATCAAAGAACAATTCATTCAGACACCGGCGGAACTGAGTCAATTAATTATGCCAATGCGTCCGTCAAGACTTCAGAGTCAAACCAAAAGGCAACGATCAATTGCTATTTGTGTGACAAAGCATTTGTCAGTCAGGCGAACCTAAATCAACACATTCAGAACCATTCACTGTATCCCGACAGTTTTGAATGCGACATCTGTGGCAGTAAGatcaagaagaagaaagattTGCTCGATCACATGAAACACACACACAGTGGCATCAAATATCCGTGCAATGTATGcggaaaatcattttcccgGTCGTCCTATCTCATCGTCCACATGCGAATGCACAACAATGACCGAGCTCATCAATGTGCAACGTGCGGTAAAACGTTTATTATGGCCGGTGCGCTAACATTTCATATGCGGAAACACAATAACACGCTGAATCAATTGCCATGCACGACTTGTGGAAAGGTTTTCAATCGTCCGGGTGCTCTGGCTGATCATATTCGTGTGCATACAGGAGAGAAACCGTTCAAGTGCGACATTTGTCAGTCGTCGTTTCGGACGCGGAAATATTTCAACGAACACAAGCAAATCCATTTGGATGTGAAAAATCATGAATGCACTTTGTGcggaatgaaatttaaacagGCGGCTGGCGTTCGGAATCACAAACGCAAAGTTCATGGGAAAAGGGTCACGTCGAAGCGGATGCAAAGTGAGAAATCGACTGGTTAA
Protein Sequence: MSSDLLGTMDSQSNDPLTLVELNESQKFAEIFCNFEGTLTFQCVFCPSQMKNFTEFNVHYIIHFREVFIVKREDEPCVFEPDIGIDEVKQEVKPELSRLEMGHETSGEQHWHDQLHCTKCNKTFESQLSFDRHVENHVLFPESFSCDICGSNIKKKKDLLGHMKDKHSGIKHPCTICGKAFNRSSYLTVHMRIHQDIRPFKCTDCGHAFITAGALSFHMKKHNNTMPQCPCPYCGKVFDRSGSLAEHVRLHTGQKPFGCGICAVNFRTKRHLREHKASHITVKEYPCDKCGETFEKSSEVVAHQRTIHSDTGGTESINYANASVKTSESNQKATINCYLCDKAFVSQANLNQHIQNHSLYPDSFECDICGSKIKKKKDLLDHMKHTHSGIKYPCNVCGKSFSRSSYLIVHMRMHNNDRAHQCATCGKTFIMAGALTFHMRKHNNTLNQLPCTTCGKVFNRPGALADHIRVHTGEKPFKCDICQSSFRTRKYFNEHKQIHLDVKNHECTLCGMKFKQAAGVRNHKRKVHGKRVTSKRMQSEKSTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -