Bcop004211.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bradysia coprophila
Gene Symbol
-
Assembly
GCA_014529535.1
Location
NC:13460842-13499255[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00018 0.0079 16.5 0.2 3 23 123 143 122 143 0.97
2 15 3.6e-06 0.00016 21.8 1.2 1 23 149 171 149 171 0.99
3 15 3.5e-05 0.0015 18.7 2.8 1 23 177 199 177 199 0.98
4 15 4.3e-05 0.0019 18.4 1.4 1 23 209 231 209 231 0.99
5 15 5.6e-06 0.00024 21.2 1.8 1 23 237 259 237 259 0.98
6 15 2e-05 0.00084 19.5 0.2 1 23 306 328 306 328 0.99
7 15 0.00031 0.013 15.8 0.9 3 23 336 356 334 356 0.96
8 15 7.1e-05 0.0031 17.8 2.0 1 23 363 385 363 385 0.99
9 15 5.9e-06 0.00025 21.2 1.0 3 23 393 413 391 413 0.97
10 15 0.0001 0.0044 17.3 2.6 1 23 419 441 419 441 0.98
11 15 0.0001 0.0045 17.2 0.9 1 23 449 471 449 471 0.99
12 15 3.2e-05 0.0014 18.8 2.1 1 23 477 499 477 499 0.98
13 15 0.00085 0.037 14.4 0.7 1 20 505 524 505 527 0.93
14 15 1.6e-05 0.00071 19.8 1.1 2 23 534 555 533 555 0.97
15 15 3.4e-06 0.00015 21.9 1.4 1 23 561 584 561 584 0.97

Sequence Information

Coding Sequence
ATGTTCGAGCAGCAAATCAAAGCCGAACCGATGGGATTTTATTCAACGTGTCCTCCACCACCACAAATGCTACAAGCACTTCAACCACAACGATCTGACAGCAATgatcaacagcaacaacaatcaGTTATTATCAATGATAAAGACATGCAACCTCAGCCATTAATTGTGCAAAATCATGGAATGGATTGGCGAACTAGACTTCCGGATAGTAATGATCAAAACAATGATGAGCCACAACCTCCAGATACGCCAATGTCAACCGTATCGGATGCAACTAAACAAGAAATACAAAGCGCACACGGAATGCCTCATTCTCTGTCTTCACAATCTAGTACTGGCCATTCACGAAGCAAACCACAAGCTTGTAAAGTTTGTGGAAAAATGCTATCGTCAGCTAGCAGTTATTACGTTCATATGAAATTGCACTCAGGAACAAAGCCGTTTCAATGTACGgtGTGCGAAGCCGCCTTCTGTCGTAAACCATATTTAGAAGTTCATATGCGAACGCATACTGGGGAGCGGCCGTTCCAATGTGATTTGTGTATGAAACGATTCAGTCAAAAGTCATCCCTAAATACTCACAAAAGGATTCACACAGGTTATTGGAGCATGCACAAACCGTTCCAGTGCTCACAGTGCAATGCAGCATTCTGCCGGAAACCCTACCTGGACATCCATATGCGAATACATACAGGCGAAAGGCCTTTTTCTTGTGATATATGCCTAAAGCGCTTTACGCAGAAGTCTACGCTTAATATACACAAGCGAATTCATActgGAGCGGCAGttcttcaaaaacaaaaacaaaaccaaaatcatTCTCAATCATCACCAAAATTTGGCAATGCTATCTATCAAATGTTTGCAAATGTGgacccaaagtatataaaaaagCACTTTCAGGAAAGGCCTTTCCAGTGTGAACAGTGTCCGGCTGCATTTTCGCGAAAGCCTTATCTCGACATACATTTACGGACCCATACTGGCGAACGTCCTTTCGGTTGTGATGTATGTCTAAAACGCTTTACGCAGAAGTCTTCACTTAACATCCATAAAACTATACATACCGTCGGTAATAGGCCTTTCCAGTGTGACCAATGCCCGGCGTCGTTCTGCAGGAAGCCCTACCTCGATATCCATAGAAGAACTCACACAGGAGAGCGTCCTTACGGTTgtgaaatttgtcaaaaacgtttttcgcagaGGTCCACGTTAAACATACACAAAAGAATCCATACagGACATAGACCGTTCCAGTGTGCCACCTGCTTAAAATCCTTCTCACAGAAGTGTGCCCTTAATTTGCATATGCTCAGTCATACTGCCgTGCAAGGACGTCCCTTCCAGTGCTTGCAATGTCCGGCGGCGTTCTGCCGAAAACCGTACCTTGATATCCACATGCGAATGCATACTGGCGAGCGTCCGTTCCAATGTGATTTGTGTATGAAACGATTTACCCAGAAGTCTTCTCTAAATATACACAAACGAATACACACAGGTGAACGACCATATGCGTGCgatatttgtcacaaaacgTTTGCAGTCAAAAGCTACGTAACTGCCCATAGATGGTCGCATGTGTCGGAAAAACCATTAAGCTGTGATCGTTGTTCCATGACATTTACTAGTAAATCTCAATTTGCTGTTCATATTCGCACCCACTCTGCCGGACAGAATTATGAGTGTAACGTATGCGGACGAACGTTTATTAGAGACAGCTATTTAATAAGACATCATAATCGTGTGCATCGTGAGAATCGAACCACCGAGAACAGCATTGCGACAATAAATAGTGTTGCTTCCGGGGAAATTCTCAGTGGAAATACATCCGAAGCGGGCGACGTTTATGATTCGAGCAATGCACAGGTGTGCGATCTAAGATATGTAAATAATCTGCAACAAATGAATACATCACCGGCGGTATCACAAATGTCTTCGCCCGGATTGCCCGGTGATCGTGCCATCAACAATATGAATAATAATGATCGTAACGCCGGTATGAACGGACAGGAGAGCAACAATCGTGGTGTAAATAGTCAGGATAACAGAAACGGTATAGCATTGAATAGCAACGATCGCGGCAACGGCAGCATACTGAATTTGAACGAACGTGATCGCAGTACGATGAGCGATGCCAGCGGCATTGTGCTGAACGATCGACTGATGCAGGAACGTAATCGGGCGTTGCAAGAGCGTGCTATACAGGAACGTGTGCTGCAAGAGCGTGCCATCCATGAACGAGCATTTCAGGAGCGAGCCTTACACGAACGTGCCCTCCAAGAGCGTGCGATACAGGACCGTGTGCTAACCGATCGTTTGGCCCAAGAACGGTCGGCACACGATCGTTCGTTGCATCCGCCATTAATAATACCAGGTCACGTATTGCCTCACGAACGAAtagaaaaaagtgttttaccAGGTACGATTGCTAGTCCACCAGTCTGA
Protein Sequence
MFEQQIKAEPMGFYSTCPPPPQMLQALQPQRSDSNDQQQQQSVIINDKDMQPQPLIVQNHGMDWRTRLPDSNDQNNDEPQPPDTPMSTVSDATKQEIQSAHGMPHSLSSQSSTGHSRSKPQACKVCGKMLSSASSYYVHMKLHSGTKPFQCTVCEAAFCRKPYLEVHMRTHTGERPFQCDLCMKRFSQKSSLNTHKRIHTGYWSMHKPFQCSQCNAAFCRKPYLDIHMRIHTGERPFSCDICLKRFTQKSTLNIHKRIHTGAAVLQKQKQNQNHSQSSPKFGNAIYQMFANVDPKYIKKHFQERPFQCEQCPAAFSRKPYLDIHLRTHTGERPFGCDVCLKRFTQKSSLNIHKTIHTVGNRPFQCDQCPASFCRKPYLDIHRRTHTGERPYGCEICQKRFSQRSTLNIHKRIHTGHRPFQCATCLKSFSQKCALNLHMLSHTAVQGRPFQCLQCPAAFCRKPYLDIHMRMHTGERPFQCDLCMKRFTQKSSLNIHKRIHTGERPYACDICHKTFAVKSYVTAHRWSHVSEKPLSCDRCSMTFTSKSQFAVHIRTHSAGQNYECNVCGRTFIRDSYLIRHHNRVHRENRTTENSIATINSVASGEILSGNTSEAGDVYDSSNAQVCDLRYVNNLQQMNTSPAVSQMSSPGLPGDRAINNMNNNDRNAGMNGQESNNRGVNSQDNRNGIALNSNDRGNGSILNLNERDRSTMSDASGIVLNDRLMQERNRALQERAIQERVLQERAIHERAFQERALHERALQERAIQDRVLTDRLAQERSAHDRSLHPPLIIPGHVLPHERIEKSVLPGTIASPPV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00246534;
90% Identity
iTF_00246534;
80% Identity
-