Bcop010504.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bradysia coprophila
Gene Symbol
-
Assembly
GCA_014529535.1
Location
NW:1857314-1864627[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.012 0.52 10.7 3.7 1 19 175 193 175 195 0.95
2 22 0.15 6.4 7.3 0.2 2 23 253 274 252 274 0.97
3 22 0.011 0.48 10.8 0.4 1 23 280 302 280 302 0.97
4 22 3.8e-05 0.0016 18.6 1.8 1 23 310 332 310 332 0.96
5 22 0.0039 0.17 12.3 0.3 1 23 360 382 360 382 0.98
6 22 0.024 1 9.8 0.6 3 23 389 409 388 409 0.98
7 22 0.00065 0.028 14.7 4.1 1 23 415 437 415 437 0.97
8 22 1.7e-06 7.3e-05 22.9 5.6 1 23 445 467 445 467 0.98
9 22 0.0003 0.013 15.8 3.6 1 23 474 496 474 496 0.98
10 22 0.0017 0.075 13.4 1.7 2 23 504 525 503 525 0.97
11 22 3.6e-07 1.6e-05 25.0 0.6 1 23 531 553 531 553 0.98
12 22 0.25 11 6.6 1.4 1 19 768 786 768 788 0.95
13 22 0.0087 0.37 11.2 0.3 2 23 798 819 797 819 0.97
14 22 0.00021 0.009 16.3 1.8 1 23 825 847 825 847 0.98
15 22 0.00013 0.0057 16.9 3.9 1 23 855 877 855 877 0.98
16 22 0.0002 0.0085 16.4 0.6 1 23 907 929 907 929 0.98
17 22 0.0023 0.1 13.0 4.6 3 23 936 956 935 956 0.99
18 22 0.00025 0.011 16.0 0.2 1 23 962 984 962 984 0.95
19 22 3.3e-06 0.00014 21.9 6.5 1 23 990 1012 990 1012 0.97
20 22 0.00038 0.017 15.4 1.7 1 23 1019 1041 1019 1041 0.98
21 22 0.0011 0.048 14.0 3.7 2 23 1048 1069 1047 1069 0.97
22 22 5.4e-06 0.00023 21.3 0.9 1 23 1075 1097 1075 1097 0.98

Sequence Information

Coding Sequence
ATGGTTCTGCGAATTTCAACAGCATCAATTCCTCACCGCAAGGAATTTATTTCGGCTAACAAACATGCCGATGAAACGCTGAAAAACTGGTACGACCGTTTAAAAGTCCTAGCGATCGCATGCGATTACGGAATGCATTCGGAGGCGTTTATTCTGAACCAATTCATCTGCGGTCTGGATGCATTGGTTCTGGAATATTTCCGGACGGAACAGAAGGACCTATCAGTGAACGATGTGTTTGATTTGACAAAGAGTGTCGAGCTTATAGATGTTAAACAGGTCTTGGTAACCATAAAATccgaagaattaaatttttcggaTAACGAACACTACAACGACCATACGTTCAGCGGTAGTGACGACGACGAGCAATCCACTGCAAATGAGGTAAGCACTGCCCGACTGAACTATGCTCAAACCGAGGAAAACGACGTGAACATTAGTGGGAGAAAGGATAACATTCAACCGATTGTGCCATTGCTGGCGGAAAAGCCAGGAAAATCGCAGGAACATCCACAACTGTTCGAGTGCTACTTTTGCCACAAAACTTTTAAAACGGCCGGTAAACTAACCTACCACTTTACGTGCTGTCACTCAATACGAAAGTCATCGAAAGCCACTGTTAAACGCACAATCAGATTACCGTCACCAGAATCTCCAAGATCGTACGAGTGCTATTTGTGCCACAAGTTGATGAACACTGTTGGTCACTTGCTTTATCACTACAACTTATACCACACAATTGGCAAAACGTCAACCTGTACGCTGTGCGGAAAATGGATTAGTGACGGTAGCAATATGGTACGCCACTTGAATTCGCACCTCGATGAGAAAGAGTATCGCTGTGATGTATGCAATGTGGGACTCAAAAGTCTAAAAGCGTTGAAGAAGCATTCACTGAGTCACAGCGATCCGAACGTAAAGAAGTTCAAGTGCACCAAATGCCCGAGGGTATTTGTTACGAAGATACATTTCAAAGCGCATTTGGAAGGGCATaaacGGCGCGCACCAAGTCTAAGTGAAAAGTTGGACAGTTTAATTAACAAGCGGAAAGAACAAACGACCAAAGATGGAAAATACAAATGTGATATCTGTGCGACGCAGTTTGACAAAGAACGCGAGCTAACGGCCCATTCGAAAGTGCACAACGAAAGCAAATTACTATGCCATCTGTGCGGAGCCAAACTGATGACCAAACGGAATTTGATCGTTCATTATCTTGTGCACACCAACCTGAAACCATTTGCATGTGACGAATGCGGTAAAAGGTTTTCCACCAGTACAAAATGCAAGAGGCACGTTCGGAACCATGCAGGTACTCTAGACCGACCACATAAGTGTACGCATTGCGATAAGGCGTTCATCCAAAAGAGTCATCTGGCCGATCACATGAAAGTGCACTTTCCCGGTAATCAGCGATTCAAATGCGATCAATGTCCGAAGCACTTTTTTAAAGAAGACCAATTGACCAGACACAAGCTTATACATGTCGGTATAACGAAGCCATGGCAatgtaatttttgtgaaaaaagtttcaagaCAAACTATCTTCGTGTGGAACACGAGAGAAAGCATaCTGGCGAAAGACCGTATGAGTGTCCAATTTGCGGCAAGCACTTCGCACAGCAGTCATCTCTTCGAGGTCATAGAAATATTCATTTGAGGCCACCAAAGCCACCGGCAGATCGAACGAAAAGGAAGAGGAAGCAGAAGACAGATAGCTCGATTGGAAACACTACATACCCTACAGTTACTGTAGAGGCAACAGATGCATACGAAGCAATGGTTCTACGAATATCAACCGCATCAATTCGCTACCGCAAAGAATTTAATTCGGCTAACAAACATGGCGATGAGACATTGGAAAATTGGTACGATCGGCTGAAAGTCCTAGCGGAATCATGCGACTACGGAACGTATTTGGAGGCATTTGTTCTGAACCAGTTCATCTGCGGTCTGGATGCACTGATTCTGGAGTATTTGTATGCGGAACAGAAAGACTTGTCGCTTAACGATGTGTTTGAATTGACGAAGAGTTTCGTGCACAGTAATGAGCTGGTGGATGTGAAACCCGTCTTGGTCAACATAAAACTGGAAGAGCTGCACGGATCAGACGGTGAACACTTCAACGACAATGCGTACAGTGATAGTGATGATGACGAGCAAGCGACtacgaatgaagtaaatgaTATGCGACAGAACAGTGCCCAAGCAGAGGAAGATGCAAGAAACGATAGCATTCAGGCGATGGTGCCATTTATGGCGGAAACAGCAATTGAACCGCCCGAAGTCCCAAGATTGTTCGAGTGCTATTTGTGTCACAAGACCTGGAAAACGGCGGGCAATTTAACTTATCACTTCACCTGCTACCACACAACTGGAAAAACATCGAAATGCAATCTGTGCGGAAAATGGATTAAAGACGCCAGCAACATGGTTCGTCACTTGAATTCGCACTTCAAAACGAAACAGTTTCGGTGTAGCATGTGCGACTCGGAATTCGCTCGGTACACGTCGTTGAAAAAGCATTTACAGAGCCACAGCGAACCGAACGCAAAGGAGTTCAAGTGCTCGAAGTGTTCGAAAGTATTTATTACGAGGATACACTTCAAGGCACATTTGAAAGACCATAAACGACCCGAAGTCAGTTTGAGTCAAAATTTGGACAATTtgattaagaagaagaaagccAAAGCAAAATCGGCTGCGCAAGGAAGCCACCAATGTCCCATTTGTTCGACTTTGTTTGTCAAAGAAACCGAGCTAAATGTCCACATGAAAGTGCACACCGAAACCGAATGGCTTTGCCACCTCTGCGGCAAAAAACTGATGAACAAACGGAATTTGATCCATCACTATCGGGTCCATAGTGATGAGAAGCCGTTTGCGTGCGACGAATGCGGTCGCACTTTTGCGTCCAAGGAGAAATGGAAGCTGCATGCGAAGGGTCATAGTGGCATTCGACCGCACAGTTGTACGCATTGCGACAAGTCATTCATCCAGAAAGGTCATCTGGTCAAACACATGAAAGTACACTTTCCCGATGAGCGCAGATTCAAGTGCGACCAATGCAGCAAGGACTTTAGTAAGGAAGAACGATTGGAGAAACATTTGCTTAAACATGCCGGATTAAAGCCGGTGCGATGCAATTACTGTGAAAAGAGGTTCAGGTCGAATAACCACCGGATTGAACATGAAAGAACGCACACCGGCGAAAAACCGTACCGTTGCCCAATTTGCGACAAATGTTTCGGACAACGAGCCACTCTAAGGGGTCATGTGAAAATTCATTCGAAGCCACCAAAACCGAAATCagatcgtccaaaaaaacgaagaaaaccGAAGGTGGATAACACCATTGGATACAGTATAGTAGAGGCTACAGCTGCATATCTGGGTTAA
Protein Sequence
MVLRISTASIPHRKEFISANKHADETLKNWYDRLKVLAIACDYGMHSEAFILNQFICGLDALVLEYFRTEQKDLSVNDVFDLTKSVELIDVKQVLVTIKSEELNFSDNEHYNDHTFSGSDDDEQSTANEVSTARLNYAQTEENDVNISGRKDNIQPIVPLLAEKPGKSQEHPQLFECYFCHKTFKTAGKLTYHFTCCHSIRKSSKATVKRTIRLPSPESPRSYECYLCHKLMNTVGHLLYHYNLYHTIGKTSTCTLCGKWISDGSNMVRHLNSHLDEKEYRCDVCNVGLKSLKALKKHSLSHSDPNVKKFKCTKCPRVFVTKIHFKAHLEGHKRRAPSLSEKLDSLINKRKEQTTKDGKYKCDICATQFDKERELTAHSKVHNESKLLCHLCGAKLMTKRNLIVHYLVHTNLKPFACDECGKRFSTSTKCKRHVRNHAGTLDRPHKCTHCDKAFIQKSHLADHMKVHFPGNQRFKCDQCPKHFFKEDQLTRHKLIHVGITKPWQCNFCEKSFKTNYLRVEHERKHTGERPYECPICGKHFAQQSSLRGHRNIHLRPPKPPADRTKRKRKQKTDSSIGNTTYPTVTVEATDAYEAMVLRISTASIRYRKEFNSANKHGDETLENWYDRLKVLAESCDYGTYLEAFVLNQFICGLDALILEYLYAEQKDLSLNDVFELTKSFVHSNELVDVKPVLVNIKLEELHGSDGEHFNDNAYSDSDDDEQATTNEVNDMRQNSAQAEEDARNDSIQAMVPFMAETAIEPPEVPRLFECYLCHKTWKTAGNLTYHFTCYHTTGKTSKCNLCGKWIKDASNMVRHLNSHFKTKQFRCSMCDSEFARYTSLKKHLQSHSEPNAKEFKCSKCSKVFITRIHFKAHLKDHKRPEVSLSQNLDNLIKKKKAKAKSAAQGSHQCPICSTLFVKETELNVHMKVHTETEWLCHLCGKKLMNKRNLIHHYRVHSDEKPFACDECGRTFASKEKWKLHAKGHSGIRPHSCTHCDKSFIQKGHLVKHMKVHFPDERRFKCDQCSKDFSKEERLEKHLLKHAGLKPVRCNYCEKRFRSNNHRIEHERTHTGEKPYRCPICDKCFGQRATLRGHVKIHSKPPKPKSDRPKKRRKPKVDNTIGYSIVEATAAYLG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-