Basic Information

Insect: Bradysia coprophila
Gene Symbol: -
Assembly: GCA_014529535.1
Location: NW:7695482-7702624[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 6.7e-05 0.0029 17.8 1.6 1 23 318 340 318 340 0.96

2 18 0.00091 0.039 14.3 0.0 1 23 346 368 346 368 0.97

3 18 1.3e-05 0.00058 20.0 1.5 1 23 376 398 376 398 0.98

4 18 0.0013 0.055 13.8 2.5 3 23 406 426 404 426 0.98

5 18 0.00033 0.014 15.6 5.9 1 23 432 454 432 454 0.98

6 18 8.7e-05 0.0037 17.5 2.5 2 23 460 481 460 481 0.94

7 18 2.2e-06 9.4e-05 22.5 5.8 1 23 487 509 487 509 0.98

8 18 3.5e-07 1.5e-05 25.0 3.1 1 23 515 537 515 537 0.97

9 18 0.0001 0.0043 17.3 6.7 1 23 543 565 543 565 0.97

10 18 0.0011 0.046 14.1 6.3 1 23 571 593 571 593 0.98

11 18 2.6e-05 0.0011 19.1 3.8 1 23 599 621 599 621 0.95

12 18 4.9e-06 0.00021 21.4 4.4 1 23 627 649 627 649 0.98

13 18 0.0011 0.047 14.0 6.4 1 23 655 678 655 678 0.96

14 18 0.00023 0.01 16.1 7.2 1 23 678 700 678 700 0.98

15 18 5.5e-05 0.0024 18.1 5.2 1 23 707 730 707 730 0.96

16 18 0.023 0.97 9.9 2.4 1 21 737 757 737 759 0.91

17 18 1.1e-05 0.00046 20.3 1.5 1 23 769 791 769 791 0.99

18 18 0.00035 0.015 15.6 1.8 1 23 797 820 797 820 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	6.7e-05	0.0029	17.8	1.6	1	23	318	340	318	340	0.96
2	18	0.00091	0.039	14.3	0.0	1	23	346	368	346	368	0.97
3	18	1.3e-05	0.00058	20.0	1.5	1	23	376	398	376	398	0.98
4	18	0.0013	0.055	13.8	2.5	3	23	406	426	404	426	0.98
5	18	0.00033	0.014	15.6	5.9	1	23	432	454	432	454	0.98
6	18	8.7e-05	0.0037	17.5	2.5	2	23	460	481	460	481	0.94
7	18	2.2e-06	9.4e-05	22.5	5.8	1	23	487	509	487	509	0.98
8	18	3.5e-07	1.5e-05	25.0	3.1	1	23	515	537	515	537	0.97
9	18	0.0001	0.0043	17.3	6.7	1	23	543	565	543	565	0.97
10	18	0.0011	0.046	14.1	6.3	1	23	571	593	571	593	0.98
11	18	2.6e-05	0.0011	19.1	3.8	1	23	599	621	599	621	0.95
12	18	4.9e-06	0.00021	21.4	4.4	1	23	627	649	627	649	0.98
13	18	0.0011	0.047	14.0	6.4	1	23	655	678	655	678	0.96
14	18	0.00023	0.01	16.1	7.2	1	23	678	700	678	700	0.98
15	18	5.5e-05	0.0024	18.1	5.2	1	23	707	730	707	730	0.96
16	18	0.023	0.97	9.9	2.4	1	21	737	757	737	759	0.91
17	18	1.1e-05	0.00046	20.3	1.5	1	23	769	791	769	791	0.99
18	18	0.00035	0.015	15.6	1.8	1	23	797	820	797	820	0.97

Sequence Information

Coding Sequence: ATGCAGTCAGACGCGAATGCAGGGCAGATTATTGTCAGTTTGGGAAAATATTGGGTGCTCACCAATCTGTTCGACTCACCATACATCTACAATTTAACATCGAAAACCGACAAATACAATGTGGATAACCTTGCGAAGCAAGACACATCAACACCGGAACAACAATATATATTGAACGAGACCCAACCGATTCCGATGTCCACCAATCAAATTTCGATCCCATCGTCCGTAATAACGAACTGTAATTTCTCTGCAGACACGTCGTTCCAAAACAACCAACAGTTGCTGCAGAACATAACCATCCACAACACTCTAAATCAAGCACCGAAGAGTAGCCAGCAAATATTGCGCGAGGTTCTAAACTCAACCGGTCAACATATCGTTTTGCAAGTGAGCAACGATGACATGATCGTTGACCAGAACGATGCAAAGTGCCAGAAACTCGTTCCGAATACGATGCACTTGAACGATATCAGCCAATTCAGTCACGATCATCAGATGCAAGTGCAACAAATCATCGACAATGAATTGAACAATGTGGAGCCGATACATCACATCAAGGAGGAAGTACAAACCAGTAAACAACAAACTTCGTCAGTGTCACAAATTAGCGGCGACAAAAGCCATCTATCGAATCAAATTGTGGACGTGCACAGCGGCGACGGAGTGATTCAAATGAACATAGACGATATCAGTCAGTTTCTTAACTACCACGAAGTGTTCGGTAAAATATCAAACGACAACATACTGACCGTTCCCACAATCAACACATCAACGACCGCGACCACTCAGAGCACGTCCCATCTAATGAACGTAATTCAAACGAATGCGTCACCATCGACGACGACCAAATTTCTAACACCGAAACTGGAAAGTTATCCAACCAGCAGCATAGCGCATACCGATGGTAAAGAGGGCGATTGTTCGACCTCATCGATGCTGCCCGGAAGCCATGCATGCGACGTCTGTGGTAAACTATTCAGTTTCAAATATCAGTTGATTGTTCACCGCCGACAGCACAACCGAAGGAAGCCATTCATTTGTCAAGTGTGTGGACAGGCTTTCGTCTCAACGGTTGAACTGTCGGCTCACGGGAAGTCACACGATAACAATGGGAATAGTATGTTCACTTGTAACGTGTGTTACCATGTTTTCGCTAACGAGGCCAGTCTGGAACGGCACATGAAAAGGCATTCAACGGATAAGCCTTTCGGGTGCTCGGTGTGTTTGAAAACGTTTGCCAGGAAAGAGCATCTGGACAATCACTTTAGATCTCATTCGGGAGAATCTCCCTTTCGATGTCAGTTCTGCGCAAAGACCTTCACCAGAAAGGAGCATATGCAAAACCACGAACGAAAGCATACCTCAACAGCGCCCCGATGTGATATCTGCAACAAATCGTTTACACGGAAGGAGCACTACATTAACCATTCGCTGTGGCACAATGGAACCACACCGCATCAGTGTTCGATATGCAACAAGAAGTACACTCGGAAAGAGCATTTGGCCAACCATATGCGGTCACATACTCAGGAAACACCGTTTCGCTGTCAGATTTGCGGGAAAAGTTTTACACGCAAGGAGCACTTCACCAACCACATACTGTGGCATTCAGGCGAAACGAATCACCGGTGCGATTTCTGCTCGAAAACGTTTACACGGAAGGAGCATTTGCTGAATCACGTCCGGCAACACACCGGTGAATCTCCACACAAATGCGACACGTGCATGAAAACGTTCACACGGAAGGAGCATTTACTGAATCACGTCCGGCAACACACTGGAGAGAAACCGTTCCAGTGCACCTACTGCACCAAAGCGTTCACGCGAAAAGATCACCTGGTCAACCATAATCTTCAGCACAGTGGCGAGAAGCCATTCAAGTGTACCTATTGTACCAAAGCTTTTACGCGGAAGGATCATCTGGTGAACCATGTCAAACAACACACAGGGGAATCACAGCACAAATGTACCTGTTGCACCAAGACTTTTACACGCAAGGAACATTTACTGAATCACATCAACAAACCGCATAAGTGTCAGTTCTGTGCGAAAGCATTTACGAGGAAGGAACATCTGACCAATCATCTCCGGCATCACACTAGTAGTGACAGTTCGCATGTTTGCACCATTTGCAATAAGCCGTTCGGACGAAAGGAGCATCTCATCAATCACATGAGTCGATGTCACACAGACCGTGAACGTCCGTTCAGTTGTTTGGAATGTGGAAAGTCTTTTCCGCTGAAGGGCAATTTGCTGTTCCATCAAAGATGCCATAATAAAGGCGTCAAGGCTGAACGAAATTTCCAATGTGATCTCTGTCCcaaagattttatttcgaaagGTCATTTAGTGTCGCACAGGCGTTCTCACTCTGGTGAACGTCCGTTCTCTTGCCAACACTGTTCGAAAGCGTTTGTGGGCAAAGGAAACTGGCTGAGGCATGTGAAGAAAAGTCATCCGCACGTAACGAATCCTCAGTGCAGTATGGCCAAGCCAAAAGAAACCAAAACTCAGAGTATTCCCACGTCTGTCGTAACACTTTCCCCACCGACTGCATCTACTGTGACCTCAATAACCGGCGGCCAGGCGATACAGCAACAAATTACAATGATgcaacatcaacaacaacagcgTAAACAGCAGCAACACAACCAGCAGCCACCGAAAAGCGAATTGCACAATTTGATGGAACAACCGAAGACCATCATTACCAAACTTGACCATCACCAGGATCAAGTGAATCAGCAAAAGAATCAACTGCAAACGTTGCTGGAAATGCAAAAGAGCATCATAATAACGAACCATGCCCAACATCAATCGCATGCGACACTTCAGCAAATCAGCGATCATCAGTTAATAGAGGCTAGCCAGGACAGTTTGCCCATAACAATTTTGCGCACCAGTTCGCAAAACATTGGACTCAATGCCGGTGTTCACATTCATCAGTTGTCGGCTGCCACTGATCAGCattcaattgtttattga
Protein Sequence: MQSDANAGQIIVSLGKYWVLTNLFDSPYIYNLTSKTDKYNVDNLAKQDTSTPEQQYILNETQPIPMSTNQISIPSSVITNCNFSADTSFQNNQQLLQNITIHNTLNQAPKSSQQILREVLNSTGQHIVLQVSNDDMIVDQNDAKCQKLVPNTMHLNDISQFSHDHQMQVQQIIDNELNNVEPIHHIKEEVQTSKQQTSSVSQISGDKSHLSNQIVDVHSGDGVIQMNIDDISQFLNYHEVFGKISNDNILTVPTINTSTTATTQSTSHLMNVIQTNASPSTTTKFLTPKLESYPTSSIAHTDGKEGDCSTSSMLPGSHACDVCGKLFSFKYQLIVHRRQHNRRKPFICQVCGQAFVSTVELSAHGKSHDNNGNSMFTCNVCYHVFANEASLERHMKRHSTDKPFGCSVCLKTFARKEHLDNHFRSHSGESPFRCQFCAKTFTRKEHMQNHERKHTSTAPRCDICNKSFTRKEHYINHSLWHNGTTPHQCSICNKKYTRKEHLANHMRSHTQETPFRCQICGKSFTRKEHFTNHILWHSGETNHRCDFCSKTFTRKEHLLNHVRQHTGESPHKCDTCMKTFTRKEHLLNHVRQHTGEKPFQCTYCTKAFTRKDHLVNHNLQHSGEKPFKCTYCTKAFTRKDHLVNHVKQHTGESQHKCTCCTKTFTRKEHLLNHINKPHKCQFCAKAFTRKEHLTNHLRHHTSSDSSHVCTICNKPFGRKEHLINHMSRCHTDRERPFSCLECGKSFPLKGNLLFHQRCHNKGVKAERNFQCDLCPKDFISKGHLVSHRRSHSGERPFSCQHCSKAFVGKGNWLRHVKKSHPHVTNPQCSMAKPKETKTQSIPTSVVTLSPPTASTVTSITGGQAIQQQITMMQHQQQQRKQQQHNQQPPKSELHNLMEQPKTIITKLDHHQDQVNQQKNQLQTLLEMQKSIIITNHAQHQSHATLQQISDHQLIEASQDSLPITILRTSSQNIGLNAGVHIHQLSAATDQHSIVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00246527;
90% Identity: iTF_00246527;
80% Identity: -