Bcop010046.1
Basic Information
- Insect
- Bradysia coprophila
- Gene Symbol
- -
- Assembly
- GCA_014529535.1
- Location
- NW:3073077-3075816[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3.9e-05 0.0017 18.6 1.5 3 23 83 103 81 103 0.96 2 17 0.0032 0.14 12.6 0.9 1 23 109 131 109 131 0.98 3 17 4.8e-06 0.00021 21.4 0.9 1 23 137 159 137 159 0.98 4 17 3.5e-06 0.00015 21.9 0.5 1 23 165 187 165 187 0.95 5 17 0.0004 0.017 15.4 4.9 1 23 193 215 193 215 0.98 6 17 2.8e-08 1.2e-06 28.5 1.1 1 23 221 243 221 243 0.98 7 17 0.00011 0.0048 17.1 1.3 1 23 249 271 249 271 0.97 8 17 5.5e-05 0.0024 18.1 0.5 1 23 277 299 277 299 0.94 9 17 0.00036 0.016 15.5 0.4 1 23 305 327 305 327 0.98 10 17 0.00073 0.032 14.6 0.2 1 23 333 355 333 355 0.96 11 17 1.1e-05 0.00049 20.3 3.2 1 23 361 383 361 383 0.98 12 17 0.0013 0.055 13.8 0.7 1 23 389 411 389 411 0.98 13 17 9.7e-05 0.0042 17.3 2.1 1 23 436 458 436 458 0.98 14 17 0.00023 0.01 16.1 0.6 1 23 607 629 607 629 0.98 15 17 7.5e-06 0.00032 20.8 0.7 1 23 635 657 635 657 0.98 16 17 0.00016 0.007 16.6 2.0 1 23 663 685 663 685 0.98 17 17 0.031 1.3 9.5 0.7 3 23 693 714 691 714 0.91
Sequence Information
- Coding Sequence
- ATGGATCAAATATTCGTAGGTGGTATTCAGGAAGACAGGGGTCTAAAGGCTAAAGTGACCATCGATAAATGTACGTCTGACTCCCTCAAAAATTGTGACAACGAACTTTGTATGGTCGACTCGTCAAGAGTCACTTGCAAGACAGAATGCGAAAATGTTGTCAGCAGGACCGAAGGCGAATTCGAATCTACTCCATCATCGGAAACCACTGTACCTTCGGCTCCTGTGGCAGGAATTGCTTTGGATTGTGACAAATGTGAGAAAACGTTTAGATCCAAACTTGGTCTTCAAAAGCACCAATTGAGACACACTGAAACCGGACCATTCACATGTGACTTCTGTGAAGCAAAATTTAAGGGCAGTAACGGtctcaaaattcataaacGGTTGCATACCGGTGAAAATCTGTTCACCTGTGACATCtgcaaaaaatcattcaaccAACGATCAGTCATCACCGTCCATATGCGTATCCATTCCGATTATCACCCATTCGCCTGCGATCAATGCGATAAATCATTTCGCACGCCTGGTAACCTGAAATTGCACAAAGTGAGCCACACCGACGAGAAAAAGTTTACGTGCGACGAGTGTGGCGTCAAATTAAAGACGAAATGTTCGCTCGAAAGACATCACAGGATGCATGCCGGTGAGAAATTGTACGTCTGCGACGAGTGTGGGAAAAAATTCAGCGACAGAAGTACACTGCGCAATCACCAACGTTTACATTCGGGCTCAAAGCCCTACGCATGTGATGCATGTCCAATGAAATTCACTCAACGAACATACTTGCAACAACACAAACGGACGCATACCGGTGAACGTCGATATGAATGTGATGAATGTGGAATGAGATTTTCGCAGAAATCTGCCGTTAAAACTCATAAAGTCCAACATACCGGTGCTCGGCCCTTTCCGTGTGATGTATGTGAAATGACATTCTCGTACAAATCGGCCGCATTGTCTCACAGGAAGACACACACCAACGAGCGCAATTTTGCCTGCGATGAATGCCCGATGAcgtttgcatataaatcggtTTTAATAACGCATAAAATGCAACATTCGGGCAGCAGACCGTTTAAGTGTGACGAATGCGAAAAGGGATTCACCCGAAAGTTCTACCTCAAGTCCCATAAACTGACACACCGAGGGGAGAAGCCATTCCCATGTGATGAATGTAGCTCACGATTCGGCACTAGAAATCTGCTGAATCAACACAAAAGAATTCACGCAAAGAAATCGAACGCGGCAACTGTGTCGAAAGTTGCCGAAAAATGTAACGAGCAGCTTGTCGGGAGACAGTTTCCTTGTGACGAATGTTACTCGAAATTCAGCAGTAGATCTCAACTGAATCAGCACAAGAGAAGTCATGAAACCTTGCCAAAAATAACGCCTGAAATCTCAGTTGAAACAGCCATAAAGAACCCTGCACCTCAGCATGAACCTAGCGTTGTGTCCAGCAAATTAGAATTTGTTGAGATTTCTTGTTCCGGAATGGACCCTTCGAAAGCGTTCGATGGGAAACCACTAGTCGAGTTTATTCCATATGAAGAGTCATCGTGTCACGATAGGGACGTTGATGAGACATTCACTCACAATGAAATTGCAATAAGTGACGAGGTACAAACGAGTGTTGAATCACGCAAAACTCCCGGTCAACCAATCCTTCACGACAAATTTGAAACCAAGTCTGGAGACGCCCTTGAGGCAGTTGACTGTCATATTGACCAAAATCCCAAAGTTACTGCAGATTGCGGCgacaaaatcatgaaaaagCAAAAAGCACCCAGACGTTCGGACACTTGTGACAAGCAGTTCGTTTGCAAAGAATGTCCAGAAAAATTCGCGAAGGTGTCTCGCCTCAAAATCCATAGCCGAACGCACACTGGCGCCAATCGATTTGTCTGTGACCAGTGTGGTCGTGGTTTCGATCGGGCTGATAGTTTTAAGAAACATAAGCGTTGGCACAACGGCGACAAGCGATTCAGTTGCGATATTTGTGGTGCTCAATTCTACGAGAAAAATCACCTGTTCACCCACATCCAAAGGCATGTCGGTGTTAAGAATATCGCTTGCAATGAGTGTGCCTCGAAATTTGTTACGAAATCGGAACTGAGTCAACACAAAGAACATGCACACCGCAAGAAGCCTGTGGCTTAG
- Protein Sequence
- MDQIFVGGIQEDRGLKAKVTIDKCTSDSLKNCDNELCMVDSSRVTCKTECENVVSRTEGEFESTPSSETTVPSAPVAGIALDCDKCEKTFRSKLGLQKHQLRHTETGPFTCDFCEAKFKGSNGLKIHKRLHTGENLFTCDICKKSFNQRSVITVHMRIHSDYHPFACDQCDKSFRTPGNLKLHKVSHTDEKKFTCDECGVKLKTKCSLERHHRMHAGEKLYVCDECGKKFSDRSTLRNHQRLHSGSKPYACDACPMKFTQRTYLQQHKRTHTGERRYECDECGMRFSQKSAVKTHKVQHTGARPFPCDVCEMTFSYKSAALSHRKTHTNERNFACDECPMTFAYKSVLITHKMQHSGSRPFKCDECEKGFTRKFYLKSHKLTHRGEKPFPCDECSSRFGTRNLLNQHKRIHAKKSNAATVSKVAEKCNEQLVGRQFPCDECYSKFSSRSQLNQHKRSHETLPKITPEISVETAIKNPAPQHEPSVVSSKLEFVEISCSGMDPSKAFDGKPLVEFIPYEESSCHDRDVDETFTHNEIAISDEVQTSVESRKTPGQPILHDKFETKSGDALEAVDCHIDQNPKVTADCGDKIMKKQKAPRRSDTCDKQFVCKECPEKFAKVSRLKIHSRTHTGANRFVCDQCGRGFDRADSFKKHKRWHNGDKRFSCDICGAQFYEKNHLFTHIQRHVGVKNIACNECASKFVTKSELSQHKEHAHRKKPVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00246532;
- 90% Identity
- -
- 80% Identity
- -