Bcop003759.1
Basic Information
- Insect
- Bradysia coprophila
- Gene Symbol
- -
- Assembly
- GCA_014529535.1
- Location
- NC:15163930-15172659[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.0034 0.15 12.5 1.3 1 23 15 40 15 40 0.94 2 28 0.055 2.4 8.7 1.7 1 23 56 79 56 79 0.96 3 28 0.0011 0.047 14.0 2.3 1 23 85 108 85 108 0.98 4 28 0.041 1.8 9.1 0.3 1 23 120 145 120 145 0.96 5 28 1.5e-05 0.00063 19.9 0.3 2 23 158 179 157 179 0.96 6 28 6.1e-06 0.00026 21.1 0.8 1 23 185 207 185 207 0.96 7 28 0.009 0.39 11.1 0.4 1 23 213 235 213 235 0.97 8 28 3.9e-05 0.0017 18.6 0.3 1 23 241 263 241 264 0.96 9 28 6.3e-05 0.0027 17.9 0.8 1 23 270 292 270 292 0.98 10 28 1.2e-05 0.0005 20.2 0.7 1 23 298 320 298 320 0.97 11 28 0.00024 0.011 16.1 1.3 1 23 396 418 396 418 0.97 12 28 0.034 1.5 9.3 0.2 1 20 427 448 427 450 0.95 13 28 0.41 18 5.9 0.2 2 23 473 495 472 495 0.95 14 28 0.0018 0.077 13.4 7.6 1 23 501 524 501 524 0.98 15 28 0.039 1.7 9.1 0.6 1 23 532 557 532 557 0.95 16 28 6.3e-05 0.0027 17.9 1.8 2 23 568 589 568 589 0.96 17 28 6.9 3e+02 2.1 0.9 5 16 707 718 705 723 0.61 18 28 7.1e-06 0.0003 20.9 1.0 1 23 811 833 811 833 0.96 19 28 0.013 0.56 10.6 2.8 1 23 844 869 844 869 0.93 20 28 0.067 2.9 8.4 2.0 1 23 885 908 885 908 0.96 21 28 0.00027 0.012 15.9 0.9 1 23 914 937 914 937 0.97 22 28 0.071 3.1 8.3 0.1 1 23 949 974 949 974 0.96 23 28 1.5e-05 0.00063 19.9 0.3 2 23 987 1008 986 1008 0.96 24 28 1.6e-05 0.00068 19.8 0.5 1 23 1014 1036 1014 1036 0.96 25 28 0.008 0.34 11.3 0.4 1 23 1042 1064 1042 1064 0.96 26 28 1.2e-05 0.00054 20.1 0.5 1 23 1070 1092 1070 1093 0.96 27 28 6.9e-05 0.003 17.8 0.7 1 23 1099 1121 1099 1121 0.98 28 28 7.9e-05 0.0034 17.6 0.3 1 23 1127 1149 1127 1149 0.97
Sequence Information
- Coding Sequence
- ATGACCGCACATAAAAAGAAGACGGAACGAAAGCCGAAAACGTATCGTTGCACTACAGACGGTTGCAGTAAAGTTTTTAAAACCAAGAAATCGTTTGACGAACATCGAATCAACATTCACAACATAAAACCGGAGAGCCCAGTTCCTACCgagaaaaagttgaaattctGTTGTCCGAAGTGTCCAAAGTGGTTTACAGAGCAATACAAATTAGATGGTCATGTCCGTTCGACGCACGAAGGATTGAAGCCGTACCAATGTCCAGAGTGCGAGAAAGAGTTTTGCAGGTACGGAGCTTTCGAATTTCACTTACGAACGACCCATAAAATGGTTCTGACTACAACAAAGGTAAAGGAATTTCGCTGTTACTACGATGGTTGCGACAGGAAATATGGGTTGATGGATTCATTGAACGCTCACATTAAGCGAGCTCATTTGGGCATAATACCTGTACGTAGAGATCAAAAGCTCATTTGCGACCAATGTGGAAAATCGTTTGTGGATGGATATACTCTGAAGAAACACATTTATACGCATAGCGGTAAACATCCGCACGCGTGTAAGATTTGCCCAAAAACGTTTCCAACGAATGCTGAActcaaaattcacacaatgAGACATTTGAAAGTGAAACCATTCGAATGTCCAACGTGTGGAGCGCGCAAAACTACTAGGAAAGAGCTGAATACACATCTTAGCGTCCATTCGACGGAAATAACGTATCCCTGTAAAGAGTGTCCTCGAGTGTTTCCGAGCACCAGTGCAGTCAGTCGGCATGTACGAATCCATCATCGTAATCATAGACCATACATTTGTCCCCATTGTGAACGTGCATTTGCAAAGTCTGAGACGATGAAAAATCATGTCATGACACATACTGGTGAGAAACCGTTTGCCTGTTCCGTCTGTGGTCATCGTTTCATTCAGTCCGTTGCTTTGAGAACACATATGAAAGTCCATGAAAAAAGAGTTAAGATCATAACTGCGCCAATAAAAGAGGAACCACCAATCGATGTTAACATGGAACTTGAAGAGAATCCAGCCGAAGCTGAAGATATCGAATCtgaattctttaaaattgaatatattGACGCGAAGTTCGAACAGTACCATTACGTCTCAACCGCTCAGAATGATGTAACATCTCCAGTAGATACTCATTCCAATTCAATGAGCAGTGAAAAATACATATGCCACTACTGTGACCGGGTGTTCAATAAAAAGACTTCTATCGGTGCACATATGGCCAGGCATAGAAATGGTCcagagaaaaacaaattccCATGCACAATAGAAGGGTGCAGCAGAGTTTATAAAACAAGAGAACTGTACAATAGACACAGATGGAATTCGCACAAACTGAGAGCAGAACCCCGTCCTGAGATCACTCCCGACGgcgagaaaataataaaattaatctgTCAGCAATGTCCGAAATGGTTTACGATTCAACTGAAATTAGATGCACACATCCGATCGTACCATCAAGGATTGAAGGGATACAGATGTGAACATTGCGAGAAAGAGTTCTGCAAATACCGATCCTACAATAGGCATTTACGAGTTCGACATGGCACCgacgaaacagaaaaacatTACTGTACATACGATGGATGTGATAGAGAGTATGGAGCACTAGACTCATTGAAAAATCACATTAAACGAATTCATTTGGGGATAGTACGTGCAACTCGAAAACCCACTTGTGGTCAATGTGGACAAGTATTTAAGACTAGATATAGCTTaaagAAGCATAGCCTGAAGCATTCGGAAATATCACCATCTGCCTGTAAGgCTGAATCGATTGGCATGTACCGAACCCATCATCGAAACCAAGTATGTGTTGGACGCATTAAGTCCTCATTTTCAACGTACATTTTCGAAGTGCGAAACGATGAAAGACAATGTGAAGACACTCCTGtgttaaataattttagtttttcattgaGAAATAAGGAACTGAAAATGGATAACCCATTTTCAAATCGATGTCGAGCCTGTGCCGTGCTACTAATGAGTTCGGAAAAAATTATATCTCTGTTGGAAGACAATCTACTTGTCATGTTTACATACTGCACTTCATTGGAGGTTTCTTCAAACGATAGCCTTCCAAATTGTATTTGCCCGGAATGTTTTCGACAATTATCAGACTTCAGTGCGTTTCGTCGTAACTGTGCAGAGTCAGATGCATACTTTCGTGAACAGATTCTCACAAAATCGATCAAAACAGAACAACTCGACCAAACTGTTGTGAAAAGCGAGGAAAATGAACCGAATCAAGAAATCAAATtcgaattcaatgaaattgattgtAGTGGCGAGAATTTCACACAATATGACACAGAATCGATCGTGCACAGCCCTGCAGCGTCAACTGATGTATCTAATCCAATTATCCCTAACTCAACCACATCCGAGGACCcgccaaaatatttttgtgactATTGTGGCAAAGGATTTCGTCAAAAGAGTTACCTCGGATCACATATGACCGCACACAGAAAGAAGATGGAACGAAAGCCGAAAACGTATCATTGCACTACAGACGATTGCAGTAAAGTTTTCAAGACCAAGAAATCGTTTGACGAACATCGAATCAACATTCACAAATTAAAACCGCAGAGCCCAGATCCTACCAAGACAAAGGTGAAATTCTGTTGTCCGAAGTGTCCAAAGTGGTTTACAGAGCAATACAAATTAGATGGTCATGTCCGTTCGAAGCACGAAGGATTGAAGCCGTACAAATGTCCAGAGTGCGTGAAAGAGTTCTGCAGGTACGGAGCATTCGAATATCACTTAAGAGCTGCCCATCAAAAGTTTCTGAATACAACAACGATATGCGAATTTCGCTGTTACTACGATGGCTGCGACAGGGAATATGGGTTGATGGATTCATTGAACGCTCACATTAAGCGAGCTCATTTGGGCATAATACCTGTACGTAGAGATCAAAAGCTCATTTGCGACCAATGTGGAAAATCGTTTGTGGATGGATATACTCTGAAGAAACACATCTATACGCATAGCGGTAAACTTCCGCACGCGTGTAAGATTTGTCCAAAAGCATTTGCAACGAACGTTGAGctcaaaattcacacaatgAGACATATGAATGTGAAACCATTTGAATGTCCGACGTGTGGAGCACGCAAAACTACGAACAAAGAGTTGCAGGCTCACCTTAACTTTCATTCGAAAGAAATATCGTATCCGTGTAAAGAATGTCCGCGAGTATTTACCAGCTATGGTGCAGTGACCCGACACGTAAGAATCCATCATCGTAATCATAAACCGTACATTTGTCCACACTGTCAACGTGCATTTGCAAAGGCGGAgacaatgaaaaatcatgtgATGACACACACTGGTGAGAAACCGTTCGCATGTCCTGTTTGTGATCATCGTTTTATTCAAGCTGTTGCTATGCGAACACATATGAAAGTCCATGCTAAGAAATGA
- Protein Sequence
- MTAHKKKTERKPKTYRCTTDGCSKVFKTKKSFDEHRINIHNIKPESPVPTEKKLKFCCPKCPKWFTEQYKLDGHVRSTHEGLKPYQCPECEKEFCRYGAFEFHLRTTHKMVLTTTKVKEFRCYYDGCDRKYGLMDSLNAHIKRAHLGIIPVRRDQKLICDQCGKSFVDGYTLKKHIYTHSGKHPHACKICPKTFPTNAELKIHTMRHLKVKPFECPTCGARKTTRKELNTHLSVHSTEITYPCKECPRVFPSTSAVSRHVRIHHRNHRPYICPHCERAFAKSETMKNHVMTHTGEKPFACSVCGHRFIQSVALRTHMKVHEKRVKIITAPIKEEPPIDVNMELEENPAEAEDIESEFFKIEYIDAKFEQYHYVSTAQNDVTSPVDTHSNSMSSEKYICHYCDRVFNKKTSIGAHMARHRNGPEKNKFPCTIEGCSRVYKTRELYNRHRWNSHKLRAEPRPEITPDGEKIIKLICQQCPKWFTIQLKLDAHIRSYHQGLKGYRCEHCEKEFCKYRSYNRHLRVRHGTDETEKHYCTYDGCDREYGALDSLKNHIKRIHLGIVRATRKPTCGQCGQVFKTRYSLKKHSLKHSEISPSACKAESIGMYRTHHRNQVCVGRIKSSFSTYIFEVRNDERQCEDTPVLNNFSFSLRNKELKMDNPFSNRCRACAVLLMSSEKIISLLEDNLLVMFTYCTSLEVSSNDSLPNCICPECFRQLSDFSAFRRNCAESDAYFREQILTKSIKTEQLDQTVVKSEENEPNQEIKFEFNEIDCSGENFTQYDTESIVHSPAASTDVSNPIIPNSTTSEDPPKYFCDYCGKGFRQKSYLGSHMTAHRKKMERKPKTYHCTTDDCSKVFKTKKSFDEHRINIHKLKPQSPDPTKTKVKFCCPKCPKWFTEQYKLDGHVRSKHEGLKPYKCPECVKEFCRYGAFEYHLRAAHQKFLNTTTICEFRCYYDGCDREYGLMDSLNAHIKRAHLGIIPVRRDQKLICDQCGKSFVDGYTLKKHIYTHSGKLPHACKICPKAFATNVELKIHTMRHMNVKPFECPTCGARKTTNKELQAHLNFHSKEISYPCKECPRVFTSYGAVTRHVRIHHRNHKPYICPHCQRAFAKAETMKNHVMTHTGEKPFACPVCDHRFIQAVAMRTHMKVHAKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -