Bcop004711.1
Basic Information
- Insect
- Bradysia coprophila
- Gene Symbol
- -
- Assembly
- GCA_014529535.1
- Location
- NC:12258340-12265315[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 2.1e-05 0.0009 19.4 1.2 1 23 117 139 117 139 0.96 2 21 0.00011 0.0047 17.2 5.5 1 23 145 167 145 167 0.98 3 21 0.0034 0.15 12.5 0.2 2 23 174 195 173 195 0.97 4 21 7.1e-07 3.1e-05 24.0 2.4 1 23 204 226 204 226 0.97 5 21 0.00027 0.012 15.9 4.7 1 23 232 254 232 254 0.98 6 21 0.0038 0.16 12.3 0.3 2 22 261 281 260 282 0.91 7 21 6.6e-07 2.8e-05 24.2 2.5 1 23 311 334 311 334 0.98 8 21 0.00021 0.0091 16.3 2.5 1 20 340 359 340 362 0.94 9 21 2.7e-05 0.0012 19.1 1.7 3 23 370 390 368 390 0.98 10 21 4.1e-06 0.00018 21.7 0.8 1 23 396 418 396 418 0.98 11 21 4.6e-06 0.0002 21.5 0.9 1 23 425 447 425 447 0.96 12 21 3.1e-05 0.0013 18.9 0.2 1 23 453 475 453 475 0.98 13 21 1.6e-05 0.00068 19.8 0.6 1 23 481 503 481 503 0.97 14 21 1.4e-05 0.0006 20.0 0.4 1 23 509 531 509 531 0.97 15 21 0.005 0.22 11.9 4.9 1 23 537 559 537 559 0.96 16 21 0.00098 0.042 14.2 2.8 1 23 565 587 565 587 0.97 17 21 1e-06 4.3e-05 23.6 2.6 1 23 593 615 593 615 0.98 18 21 2.6e-06 0.00011 22.3 3.3 1 23 746 768 746 768 0.98 19 21 1.1e-06 4.6e-05 23.5 0.8 1 23 774 797 774 797 0.95 20 21 0.0027 0.12 12.8 3.0 3 23 805 825 803 825 0.97 21 21 0.007 0.3 11.5 3.6 1 23 831 854 831 854 0.96
Sequence Information
- Coding Sequence
- ATGGACCAAACATCAAACGGTCAAACGGGTTCCATCGAAAAAGTATGGTTCAAGAGTGAACCTGCGGACGACGAGCCAAATGGATATTTCTacataaaaactgaagatggAGTTGACATCGTCGAAGGAAAGCCACCACCGGAAATATCAGTCCCAGACGAAGAATCATCGAATGTCCCCATCAAATCCGAAATTACATTTGACGTTTTTGAATGCATGCCAGCGTCGGACGTGCTTGAAATCACGAACGATGCAGAGCCAGAGTTCATTGACACACTCGGCGCAAAGGAGACCGCTGCCAGATTGGACGTCAAGAGATCGGAACAAATGGACACCGGTAGgagttcgttcagttgcgaCGAATGCGGAAAAGAATTCAACATGAAAGGTAGCCTCAACAGACACAAAATGTTCCATCTGGGACTGAAACCGTTTGAGTGCGACTATTGCGGCATGAGATTCGCCCAAAAGTGTCACATGAAACAACACCAGCTGACGCACCAAGGTGATAACATGATGCCGTGCGATAAATGTGGAGTCAGTTTTGCGTCGATGCGTATTCTTCAGTTACATCAACGGACACACATGAAAACAACGAATTCGGATTCGTTCGCTTGCGAGGTATGCGGAAAAGAATTCAACCGAAGATATCACCTCACCAGACACGAACGGTCCCATTCAGGTGAGAAACCGTTTGAGTGCGACGAATGTGGGCTCAGATTCGCCCAGAAGTGTCACATGAAGCAGCACCGACTAACACACAATGGCGATAAAGTGGTCCAGTGCAATGAGTGTGGGATCAATTTTATGTCGATTCGCAGTTTGAGGAAACATCAGTGGACACACTTGGATGTAGGATCCGTTGCCgaaaatcaatcgaatgttGATACAGGTGGCCAAGTTGATCAGCACAATGCTGGTGAGAAAGTTTTTTCCTGTAACCTGTGTGGAAGAAGCTTCAGCCGACGATATTATCTGTTCGTGCACCAGCGACGTGACCATTCCGGCTATTTGCCCTTCAGTTGTGACATTTGTGAAAAGAAATTCGTCGACCAGAAAACACTTACGCGACACGTGCTTTGCCATTCAAGTGATAAATCTTTCGGCTGCGACAAATGTGGTATGAAGTTTAGACTGGAGACCTACCTAAAGAAACACATGAGAACGCACTCGGACCAAACAAGTTTCAGTTGTGACCTATGCGAAGCAATTTTTTCACGAAACTCTAGTCTAATGAAGCATCAGCGGTCGCACATCGGTGGTGAAAAAGAGTTTATTTGTGACGAATGTGGAAAATCGTTTGCTAAGAAGATCAATCTAAAGCAACACAAGGACCGCCATGCCACCGATAAGCCTTTTATCTGTGACGAATGTGGCGCCAGGTTCGCCCTgaaagtttatttaaaatcacACTTACGGACGCACAGCGACTTCAAGCCGTTTAGTTGCGACGAATGCGGATCAAGATTCACCCAAAAATCGGGACTCACTGCCCACAAACTGTCCCATACCGGACTTAAACCCTTCGCATGCGATGAATGCGGAAAGAAATTCGCCCGGAAAGCGGAGGTACGATCGCATAAGCTGACGCACAGTGGCGACAGGCGTTTTCCATGTGATCAATGCGACATGCGATTCACCAAGAATTGCCACCTTCAAGATCACAAAATTCAGCATACCGGTGAACGACCCTTTCCGTGCGACCAATGTGACATGAGATTTACCATGAAATTTTACCTCAAAACACACAAACTCAAGCATATCGGCGTTAAGCCCTTTGTGTGTACCGAGTGTCCCAAGGCGTTTTATACCAGATCTCATCTCAACCAACACAAGCGGGTACACACTAGGAGTGATGCACCGAAAGGATCGGCAAAACCGAAAGCAGGTGGCAGTACTCGTCAGAAAATCTCGTTCGGATGGCCCACATCAAATAATGATGATCAGCCGCTTACGGTGACCAACAGCAATATCAAATTTGTGTTTGAAGGAGAAGTTAAGGAGAAACCTGAGATCAAAATTCAACTGGAGGCACACATTGACCAAAGCTCTGTCGTTTCCCATGTCAAAGATGAGGCAAAAGCAATAGTAAAATCAGAGGAAGAAAATCCTTTTCCACTACAACTTATAGAGCAGACAGCTATCGAATCTGACCATCCCACCAATGTCACCGAAGACCTACCGGATATCGACAAATTCCGTACGACATCCAACCGGAGGTCAAAAGAAAAGCCATTCTCCTGCACTGATTGCGGAGCAAAATTTACTACCGAAAGGCATTTAAAACTTCACCAACGGACGCACAATggtgaaaatcaatttgtctGTGACGAGTGTGGAAAATCGTTCAATCGTCGGTATTCTCTCACCATACATAAGCAAAATGCCCACGACGGTATTAAGCCGTACGGTTGTGACATTTGCAGGATGCAATTTTCGCAAAAGTGTGACGTACGAAGGCACATGAAAAACCACCAAGGCGACAAACACTTCGATTGTGACGAATGTCATACGAAATATTCGACAATTACGTTATTGAAGCAGCACCAAACTCGCTTTCACAAGCCATAG
- Protein Sequence
- MDQTSNGQTGSIEKVWFKSEPADDEPNGYFYIKTEDGVDIVEGKPPPEISVPDEESSNVPIKSEITFDVFECMPASDVLEITNDAEPEFIDTLGAKETAARLDVKRSEQMDTGRSSFSCDECGKEFNMKGSLNRHKMFHLGLKPFECDYCGMRFAQKCHMKQHQLTHQGDNMMPCDKCGVSFASMRILQLHQRTHMKTTNSDSFACEVCGKEFNRRYHLTRHERSHSGEKPFECDECGLRFAQKCHMKQHRLTHNGDKVVQCNECGINFMSIRSLRKHQWTHLDVGSVAENQSNVDTGGQVDQHNAGEKVFSCNLCGRSFSRRYYLFVHQRRDHSGYLPFSCDICEKKFVDQKTLTRHVLCHSSDKSFGCDKCGMKFRLETYLKKHMRTHSDQTSFSCDLCEAIFSRNSSLMKHQRSHIGGEKEFICDECGKSFAKKINLKQHKDRHATDKPFICDECGARFALKVYLKSHLRTHSDFKPFSCDECGSRFTQKSGLTAHKLSHTGLKPFACDECGKKFARKAEVRSHKLTHSGDRRFPCDQCDMRFTKNCHLQDHKIQHTGERPFPCDQCDMRFTMKFYLKTHKLKHIGVKPFVCTECPKAFYTRSHLNQHKRVHTRSDAPKGSAKPKAGGSTRQKISFGWPTSNNDDQPLTVTNSNIKFVFEGEVKEKPEIKIQLEAHIDQSSVVSHVKDEAKAIVKSEEENPFPLQLIEQTAIESDHPTNVTEDLPDIDKFRTTSNRRSKEKPFSCTDCGAKFTTERHLKLHQRTHNGENQFVCDECGKSFNRRYSLTIHKQNAHDGIKPYGCDICRMQFSQKCDVRRHMKNHQGDKHFDCDECHTKYSTITLLKQHQTRFHKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -