Bcop008132.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bradysia coprophila
Gene Symbol
-
Assembly
GCA_014529535.1
Location
NW:8177512-8181899[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 8.7e-05 0.0037 17.5 6.5 1 23 66 88 66 88 0.99
2 26 0.00042 0.018 15.3 1.4 1 23 98 120 98 120 0.98
3 26 0.0068 0.29 11.5 5.7 1 23 126 148 126 149 0.95
4 26 0.0003 0.013 15.8 0.5 1 23 153 176 153 176 0.97
5 26 0.00053 0.023 15.0 0.5 1 23 182 204 182 204 0.99
6 26 0.00012 0.0053 17.0 1.0 1 23 211 234 211 234 0.96
7 26 1.7e-05 0.00073 19.7 0.7 1 23 240 262 240 262 0.98
8 26 0.00019 0.0083 16.4 0.6 1 23 268 290 268 290 0.98
9 26 0.00081 0.035 14.4 1.7 1 23 296 318 296 318 0.99
10 26 8e-05 0.0034 17.6 4.6 1 23 324 346 324 346 0.99
11 26 0.0031 0.13 12.6 1.0 1 23 352 374 352 374 0.98
12 26 0.0019 0.08 13.3 1.0 1 23 381 404 381 404 0.97
13 26 0.0088 0.38 11.2 2.5 3 23 413 434 411 434 0.94
14 26 0.00014 0.0061 16.8 0.2 1 23 440 462 440 462 0.96
15 26 1.3e-05 0.00055 20.1 3.6 1 23 468 490 468 490 0.99
16 26 1.6e-05 0.00068 19.8 0.8 1 23 496 518 496 518 0.99
17 26 1.2e-05 0.0005 20.2 0.6 1 23 524 546 524 546 0.98
18 26 0.0017 0.075 13.4 6.1 1 23 552 574 552 574 0.98
19 26 9e-05 0.0039 17.4 3.7 1 23 580 602 580 602 0.99
20 26 2.2e-05 0.00096 19.3 1.9 1 23 608 630 608 630 0.93
21 26 7.9e-05 0.0034 17.6 4.7 1 23 636 658 636 658 0.99
22 26 0.00018 0.0079 16.5 0.2 1 23 664 686 664 686 0.99
23 26 3.6e-05 0.0016 18.7 4.3 1 23 692 714 692 714 0.99
24 26 1e-05 0.00044 20.4 1.0 1 23 720 743 720 743 0.98
25 26 1.4e-05 0.0006 20.0 1.5 1 23 749 772 749 772 0.98
26 26 0.081 3.5 8.1 0.7 1 23 778 800 778 800 0.97

Sequence Information

Coding Sequence
ATGAATGGTAAATCCAACAAAATGCCGAACAAAACGGAGACAATTCTCAGGGGTCCTGCTGATGTAAACGTGAAACTGGAGAATAGCAGCGAGTTACTCAGCGATCCATCGAAGTATTTACCGCCGAACTGTGTCACTGGTCTGAAACAATTCGACAACGAAAATCATTTGCAAGATCATACAACCGAAAAGCCGTTTCAATGTCATATTTGCAGCACTGCCTTCAGACTCAAACACACTTTGAAGATGCACATGAGACGGCACACAGGACACCAGACGGaattcaaaacatttacaTGTGACATTTGTGCGAAGTCATTCAGGAAATTTCAAAGATTGAAGCTGCACATGGCGATGCATGGCGGCAGCGAGACACATCAGTGCAAAATTTGTTCCGACTCCTTCAACAATTTGAGCTCGCTAAATAATCACAAGAAGCAACATCATCCCGATGCATTCAAGTGCACCGATTGTCTGAAAACTTTTGCGGATGACCGGGCGCTAAGTAACCATGTCAAACGTATCCATCGCTCGGAACGACCGTATAAATGCGAGCTGTGTGATAAAACGTGGAAGACGATGGTTGATCTGAAAGGTCATCTACGAACACACCTATCCGACGAGAGACCGTACATATGTGACATATGCAACTATGCTTTCAAACAACTTTGCGCGTTGAAATTGCATATCAAGCAGATACACGTCGGTGGACGGCCTCACAAGTGCGATGAGTGTGGTGCTGGTTTCAATCGTCAGGATTACTTGCTGATCCATAAACGGGTCCATAGTAAGGAAAAACCTTACACGTGTGAGGTTTGCAGCAGTGCGTTTAGTCAGCTATGCTCGTTGAAGGCTCACATGGCTATTCACTCCAACGAACGGAAGTACACGTGCGAGTATTGTGACGCCAAATTTTTGCGTATGAGCTCTCTCAAAATTCACTTCAGAACGCACACGGGTGAGAAACCGTACTCGTGTACCGTCTGTTCATCTAGCTTCGTCCAGAAATGTACACTCAAACAACACATGCGAACGCACTCTGACGATCGACCGTTTCAATGTAGCATTTGCGAGGCTTCCTTCAAGTTTAAGACCATTTTGAACCGGCATGTGGAAAAGCATACGACGACACAGACGACATTCAAGTGTGTTGATTGCGGTGAAGAGTTTGCCCAATCGAActtgctgaaatttcacaaacGAAAGCAGCACAAAGACATTTACTACACGGTCCACTGTAAAGAGTGCCAACGATGCTTCAGCAATGACAAAATGTTGGCCGATCACGTTGCCAAAGTACATCGGGTCGACAAACTGTTCAAATGCGAACTATGCACGAAGCGGTTCAAGGCTGAGTCGGATTTAAACGTTCATTTGGCGGCACACTTAGACGAACGCCGTTACAGGTGCACTGTTTGTGATGGTTCCTTTAAGCAGAGCCACCGATTGAAGGAACATATGCGTACCCATACGGGTGAGAGACCATTTCAATGTGAGATATGCGACGCTGATTTTAAGTATCGCAACAACTGGAAGCAACACatgaaaatccataaaaacgaaaaatcgttCAAATGCAACGAATGTGATGCTTCGTTTATACAGAAGAATTCATTGATCACGCATTCGAGGATTCACTCCAACGATAAGCCATTCAACTGTGAAGTCTGTTATATGAGCTTCAAGCATGTGCACAGTCTAAAAACGCATCTAAGGAAGCACACAGGTGAAAAACCGTTCAAGTGCAACATTTGCAATGCTTCGTTCAACCATCGGGCTAGCTTCAACATTCACAAGAAGACGCATGATGAAGATAGGCCGTACAAGTGTGGCATCTGCGATGCTACGTTCAAACACAGCAGCTATTTGAAGAATCACCTACCCACGCACACGGAAGAGAAACTGTTTAAATGCACCATATGTCCGTCGTCGTTCAAACAACATAGATATTTGAATCAACATCTGAAAACGCACACAACGGAACGTCCCTTTAAATGTGACTCATGCCCTGCCGCATTTAAAATGCAGAAAAGTTTGGTCGAACATATTCGCATTCACACCAACGAAAGGCCGTTCAAATGCAACGTCTGCACTTCTGCCTTCAAACAACAGCACACTTTGACGCAACATTTGCGAACTCATACGAAGGAACGCCTGTTTAAATGCGAGGTGTGCCCGAAATCATTTATGCAACACATTTCGCTGAAGGCACACATACAGCGCGTCCACAACAAGgaaaatccgttcaaatgtaGCCAATGCGACAAGAGTTTTGGTGATGAAAAGGGTCTGAGGAATCATAAGCGGAAAATCCACGATTTATCGTCGATTTTTGTGTGCGATCTGTGCTGTGCAACGGTCAAAGGTAAAACTGCGCTCAAAGCCCACATGATGAAACATCGGAAGGTAATAAAGCTGCTAAACTTGAAAGtataa
Protein Sequence
MNGKSNKMPNKTETILRGPADVNVKLENSSELLSDPSKYLPPNCVTGLKQFDNENHLQDHTTEKPFQCHICSTAFRLKHTLKMHMRRHTGHQTEFKTFTCDICAKSFRKFQRLKLHMAMHGGSETHQCKICSDSFNNLSSLNNHKKQHHPDAFKCTDCLKTFADDRALSNHVKRIHRSERPYKCELCDKTWKTMVDLKGHLRTHLSDERPYICDICNYAFKQLCALKLHIKQIHVGGRPHKCDECGAGFNRQDYLLIHKRVHSKEKPYTCEVCSSAFSQLCSLKAHMAIHSNERKYTCEYCDAKFLRMSSLKIHFRTHTGEKPYSCTVCSSSFVQKCTLKQHMRTHSDDRPFQCSICEASFKFKTILNRHVEKHTTTQTTFKCVDCGEEFAQSNLLKFHKRKQHKDIYYTVHCKECQRCFSNDKMLADHVAKVHRVDKLFKCELCTKRFKAESDLNVHLAAHLDERRYRCTVCDGSFKQSHRLKEHMRTHTGERPFQCEICDADFKYRNNWKQHMKIHKNEKSFKCNECDASFIQKNSLITHSRIHSNDKPFNCEVCYMSFKHVHSLKTHLRKHTGEKPFKCNICNASFNHRASFNIHKKTHDEDRPYKCGICDATFKHSSYLKNHLPTHTEEKLFKCTICPSSFKQHRYLNQHLKTHTTERPFKCDSCPAAFKMQKSLVEHIRIHTNERPFKCNVCTSAFKQQHTLTQHLRTHTKERLFKCEVCPKSFMQHISLKAHIQRVHNKENPFKCSQCDKSFGDEKGLRNHKRKIHDLSSIFVCDLCCATVKGKTALKAHMMKHRKVIKLLNLKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00246005;
90% Identity
iTF_00246005;
80% Identity
iTF_00246005;