Basic Information

Insect: Bradysia coprophila
Gene Symbol: -
Assembly: GCA_014529535.1
Location: NW:988344-998996[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 30 0.00059 0.025 14.9 2.3 1 23 312 335 312 335 0.98

2 30 0.014 0.62 10.5 1.8 1 23 353 375 353 375 0.97

3 30 0.04 1.7 9.1 0.2 3 23 385 405 383 405 0.94

4 30 0.00019 0.0081 16.4 3.0 1 20 409 428 409 431 0.93

5 30 3.2e-05 0.0014 18.8 2.4 1 23 437 459 437 459 0.96

6 30 0.04 1.7 9.1 2.8 1 23 465 488 465 488 0.93

7 30 6.2e-05 0.0027 17.9 0.8 1 23 494 516 494 517 0.95

8 30 2.2e-06 9.5e-05 22.5 2.7 1 23 523 545 523 545 0.98

9 30 4.1e-06 0.00018 21.7 2.7 1 21 551 571 551 574 0.91

10 30 0.00029 0.012 15.8 2.2 1 23 579 601 579 601 0.99

11 30 0.004 0.17 12.2 4.1 2 23 612 634 612 634 0.96

12 30 4.1e-06 0.00018 21.6 0.9 1 23 640 662 640 662 0.98

13 30 0.00066 0.028 14.7 5.9 1 23 669 692 669 692 0.98

14 30 0.00015 0.0064 16.8 1.4 1 23 698 721 698 721 0.96

15 30 3.3e-05 0.0014 18.8 2.0 3 23 729 750 728 750 0.97

16 30 0.003 0.13 12.7 5.7 1 23 894 917 894 917 0.97

17 30 0.027 1.1 9.7 2.1 1 23 939 961 939 961 0.98

18 30 0.04 1.7 9.1 0.2 3 23 971 991 969 991 0.94

19 30 0.00028 0.012 15.9 2.9 1 20 995 1014 995 1017 0.93

20 30 7.3e-06 0.00031 20.9 1.7 1 23 1023 1045 1023 1045 0.97

21 30 0.047 2 8.9 2.9 1 23 1051 1074 1051 1074 0.94

22 30 5.6e-05 0.0024 18.1 1.8 1 23 1080 1102 1080 1103 0.95

23 30 7.2e-06 0.00031 20.9 4.7 1 23 1109 1132 1109 1132 0.98

24 30 3e-05 0.0013 18.9 1.4 1 23 1138 1161 1138 1161 0.98

25 30 0.00019 0.008 16.4 0.2 2 23 1167 1188 1166 1188 0.97

26 30 0.0006 0.026 14.8 1.5 1 23 1200 1223 1200 1223 0.96

27 30 0.00014 0.006 16.8 2.4 1 23 1229 1252 1229 1252 0.97

28 30 7.1e-06 0.0003 20.9 2.7 1 23 1259 1282 1259 1282 0.97

29 30 0.0018 0.078 13.3 1.9 1 23 1288 1311 1288 1311 0.97

30 30 0.00055 0.024 14.9 1.6 3 23 1319 1340 1318 1340 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	30	0.00059	0.025	14.9	2.3	1	23	312	335	312	335	0.98
2	30	0.014	0.62	10.5	1.8	1	23	353	375	353	375	0.97
3	30	0.04	1.7	9.1	0.2	3	23	385	405	383	405	0.94
4	30	0.00019	0.0081	16.4	3.0	1	20	409	428	409	431	0.93
5	30	3.2e-05	0.0014	18.8	2.4	1	23	437	459	437	459	0.96
6	30	0.04	1.7	9.1	2.8	1	23	465	488	465	488	0.93
7	30	6.2e-05	0.0027	17.9	0.8	1	23	494	516	494	517	0.95
8	30	2.2e-06	9.5e-05	22.5	2.7	1	23	523	545	523	545	0.98
9	30	4.1e-06	0.00018	21.7	2.7	1	21	551	571	551	574	0.91
10	30	0.00029	0.012	15.8	2.2	1	23	579	601	579	601	0.99
11	30	0.004	0.17	12.2	4.1	2	23	612	634	612	634	0.96
12	30	4.1e-06	0.00018	21.6	0.9	1	23	640	662	640	662	0.98
13	30	0.00066	0.028	14.7	5.9	1	23	669	692	669	692	0.98
14	30	0.00015	0.0064	16.8	1.4	1	23	698	721	698	721	0.96
15	30	3.3e-05	0.0014	18.8	2.0	3	23	729	750	728	750	0.97
16	30	0.003	0.13	12.7	5.7	1	23	894	917	894	917	0.97
17	30	0.027	1.1	9.7	2.1	1	23	939	961	939	961	0.98
18	30	0.04	1.7	9.1	0.2	3	23	971	991	969	991	0.94
19	30	0.00028	0.012	15.9	2.9	1	20	995	1014	995	1017	0.93
20	30	7.3e-06	0.00031	20.9	1.7	1	23	1023	1045	1023	1045	0.97
21	30	0.047	2	8.9	2.9	1	23	1051	1074	1051	1074	0.94
22	30	5.6e-05	0.0024	18.1	1.8	1	23	1080	1102	1080	1103	0.95
23	30	7.2e-06	0.00031	20.9	4.7	1	23	1109	1132	1109	1132	0.98
24	30	3e-05	0.0013	18.9	1.4	1	23	1138	1161	1138	1161	0.98
25	30	0.00019	0.008	16.4	0.2	2	23	1167	1188	1166	1188	0.97
26	30	0.0006	0.026	14.8	1.5	1	23	1200	1223	1200	1223	0.96
27	30	0.00014	0.006	16.8	2.4	1	23	1229	1252	1229	1252	0.97
28	30	7.1e-06	0.0003	20.9	2.7	1	23	1259	1282	1259	1282	0.97
29	30	0.0018	0.078	13.3	1.9	1	23	1288	1311	1288	1311	0.97
30	30	0.00055	0.024	14.9	1.6	3	23	1319	1340	1318	1340	0.97

Sequence Information

Coding Sequence: ATGCCTCCGAAGGCAGAAAAGAAGATCTGCATGGTACCAGCATGTGAGGCATCGAGTATCGACTATCCGGATCGAATATTTGTCAGTGTACCCGAGAATAAGAAACGAGAATGGTTGGCAATGGTTGGTGCTGAAAGCGTTTACATCCATCCGACAAAGCGTTTCTTTTGTTGTGAAGAACATTTTGATGTGCGGCGAGATATCAAAGACTATGACTTTTTTAAGCTGTTTGGTGGCCGTGTTAAGTTTGAAGATCATGCATATCCGTTCAAGAATTTGGGTGACGTTCCCGAAGTGATACCACCGACAATCGTTACCGATGGAAAACGTAACACGACAGATATTTACTTTCCAGCCCCACTGCCCGTCACTGTCGTTGAGGAGCAACCGATCGCTGAATCGGAACTGAAAAACAAATCCGAATCCAATTTGTGGAAAGAGCAACGCGATGATGAAGAGGATATTGTTtttgttgaCCCATTGTTTACCTCAGACGAACCGCTGGAGCCGATTGCGTCGAATATTAAAGTTGATGATGAAGATGGGTCAATGTTTGGCGTTTCGGAGAGCAAATTCGATCCTACGCAGATGACCTGGACAGAATCACCCGTTAAACAAGAGGAAATTGTGATTaaAACTGAACCCGACATCAAACTAGAACCGGCAGATGTTAATGAAGACGTCCGATACGACAGTTCTGACACCGATTATAGTGATGCTGATGATGAAGATTACGTGTATGAAGAAGAACGTAAAAGCAAAGTGAAAGTAAAAACGGAAAAGAATTCAAAAACTAAGGACAGTCGCGACGACAGCGAAGAAgatgaagatgatgatgatgactcAGACGACGAGGATGATGATAGAAAACCGACCCGCAACAACCACGACAATAGGGCTGAAGATGACTCTTATGTTCCAAAAAATACGAGCTACAAATGCCTAAAGTGCAACAACTACTACTCATCGTCCAGTTCTCTGAAGCGTCACGAACAAACCGTACACACGGCGGATAAGGacaaaatcagaaaatcgAAGAAGCCAAAACCGAAACCATTCAAATGTGATGTGTGCAAGAAGCCGTTCGAAACGTTGTTCCGGAAAAATCGCCATCTCGTCACACACGAGGAAGGTCGAGTGCGAATCATTGCCTGTCGCCAGTGTCCAGAACGGTTCACCGAATACGAAGAATACCAGCGACACAAAGTGGTGCACAACAAGAGTTTCGAATGCGACATCTGCCATAAAACGTTCACTACGAAATACTTTCTCAAGCTGCACTATCCCATCCATATGGAGACGAAACCATTTCAGTGCGATCGGTGCTCGAGATCCTTCTCACAGGCGTCCACTCTACGCAGGCACACTTATTTGCACGAGGCCGAAAAACGATTTATGTGCGAGATTTGTGGGAAGCGCTTCCATGctcaatttttggtgaaaatgcaCATCCTGCATACGCATACAAAGGTCCGAAACTTTATGTGTTCACAATGTCCGAAACGGTTTCCGTCGACCACAGCTTTAAACATCCACATCAACGTGCACCACAGCGAAGTCAATCCATACAAATGTACCGTCTGCGAGAAAACATTTAATCATCCGTCGGCGTTGATGCGACATAGAAAGCTACACACCGGAATTTGTGAGTTCGTTTGCGAACACTGCAACAAGCGATTCGTTAGATCGGACCATTTGAAAAAGCACATCGGCGACGTGCACTCGGAAAAGTCGTTCAAATGCGAACTGTGTTCATTCACCTTTAACAAGgcggaaaaactgaaaaaacatGCTCGATCGCATGAGAAACCGATAGTGAAACGGGTGCTAGAACGCTGCAACGAATGCCATCAACCGTTCACCGACCACAATAAACTGCTACGCCACCTAGAAATGTTCCACAACCCGTCGAATCCGTTCAGGTGTGACATATGCTTGAAAAGGTTCAGTCAACAGTCGGCCCTGGGTCGTCACATGAAACTGCATACCGATCAAAAGAAAAGCTTTAAGTGCAGCGAATGTGAGAAGACATTTTGCCGGTTGGATCATATTAAGACGCACACGTTGACGCTACACAATCCGGATAATCCGTACAAATGCAGTACGTGTAGGCAAACGTTCAGCACACAACAATCTCTGGATAAGCATATCGTGCGGGCGCATGAAACGGAGCGAACAATGCTGTGCGAATTTTGTAACAAAGCCTTCTCGAAACGTTACACGCTTCAACGACACATTCGAAATTTCCATGATTCGGACAGTGggggtggtggtggtggtggtggttcTGTTGTAGGCGTCGGTGTGGTTGGGGTTGACGGTGTGTTCAGTGTTGCTGATGCGAATTATGTTAATGTTCAACTAAATCATCAGATGATAAGCAATAAACCTGAACTGTACATCAAAGAGGAACCTAACAAAGAAAACATAGAAACGGATGGTAGCAGCTCCGACAATGGTAATGGAGATTTTGGTGGTGACGATGATGAAGTGGATGATGACGACGACGATGACgaggatgatgatgatgatgaagactTTAGTCTTGATAGTAGCTCAAAAGTGAAAGCCGACAAAGCATCAAATAAAACTAGCAAAGCGGACAACAAAAGCGAATCGAATCTGGATGAATATACTGATAGTTCTGACTCTGATGGATATATTCCGAAAAATACGAACCACAAATGCCTCAAGTGCAATAAATATTGTGCATCATCCAGTTCCCTGAAACGCCACGAACAAACCGTTCACACCGAAGAGAAAGATAAGCTGCGCAACGAGAAGAGACTAAAATCCAAACCGAAACCAAAACCATTCAAATGCGATGTGTGTCGTAAGCCATTCGAAACGTTGTTCCGTAAGAATCGTCATCAGGTTACCCACGACGAAGGTCGTGTTAGAATAATTGCGTGTCGCCAGTGTCCCGAAAGGTTTACCGAATACGAAGAATACCAGCGACATAAAGTAGTGCATGTGAAAAGTTTCGAATGCGATGTGTGCCACAAGAGTTTCTCGACGAAATACTTTCTCAAGCTGCACTATCCCATCCATATGGAAACGAAACCCTTTCAATGTGATCGCTGTTCTCGATCATTTTCTCAGGCTTCCACGTTACGACGCCATATCTACTTACATGAGGCAGAGAAGAAATTCATGTGCGAATTGTGTGGCAAAAGGTTTCATGCGCAATACTTAGTCAAAATGCACATTTTACATACGCACACCGAGTACAGAAAATACATCTGCAGTCAATGTCCGAAACGTTTCTCATCGACAACAGACCTAACCATTCACACAAATGTGCATCACAGTGACGTCAATCCATACAAATGCGAGACGTGCGCAAAGACTTTCACGCATCCATCAGCTTTACGTCGACATCATCGCAAAGTGCACACCGGATTCGGTGAATTTGTATGCCAACATTGCAACAAGCGATTCGTTCGTGCCGACCTAATGGACAAGCATATTAACACCGTTCACACCCTCAAATCCATCAAATGTGAATTATGTCCGGCGACATTTAACACGGCCGTTAAACTCAAGAAACATGCCCGTGTTCACAGAGAACCGCTCGTCAAACCGGCAATGATCGTTCACCGCTGCATGGAGTGCCATCAACCGTTTAATGACCCGGAGAAATTAGCACGCCATTTGGAAATGTCGCATAATCCAAACAATCCATTCAAATGCGACGTGTGCCTGAAGCGACTGAGTTCGCAGTCGGCCCTCTGTCGCCATATGAAATTGCTGCATACGATGCAAACGAAGAGTTACAAGTGCAACGAATGTGGCAAATCTTTCGGTCGATTGGAACACTTCAAGAACCATACGTTGATGTTGCACAATCCAGCCAACGAATTTAAATGCGCCACATGCCGGCAGACATATAGCACAAAGCAGTCATTAGATAAGCACATTACCCGAGTACATGAAACGGAACGAACAATGCTGTGCCAATATTGCAATAAAGCCTTTTCCAAGAGATACATTCTGCAGAGGCACATACGAAATTTCCATGATGTCGAGAGTGGCATCAGCTCAGGTATTAGTTATAATTTAATGGGTCACCAGATAGACAAATAA
Protein Sequence: MPPKAEKKICMVPACEASSIDYPDRIFVSVPENKKREWLAMVGAESVYIHPTKRFFCCEEHFDVRRDIKDYDFFKLFGGRVKFEDHAYPFKNLGDVPEVIPPTIVTDGKRNTTDIYFPAPLPVTVVEEQPIAESELKNKSESNLWKEQRDDEEDIVFVDPLFTSDEPLEPIASNIKVDDEDGSMFGVSESKFDPTQMTWTESPVKQEEIVIKTEPDIKLEPADVNEDVRYDSSDTDYSDADDEDYVYEEERKSKVKVKTEKNSKTKDSRDDSEEDEDDDDDSDDEDDDRKPTRNNHDNRAEDDSYVPKNTSYKCLKCNNYYSSSSSLKRHEQTVHTADKDKIRKSKKPKPKPFKCDVCKKPFETLFRKNRHLVTHEEGRVRIIACRQCPERFTEYEEYQRHKVVHNKSFECDICHKTFTTKYFLKLHYPIHMETKPFQCDRCSRSFSQASTLRRHTYLHEAEKRFMCEICGKRFHAQFLVKMHILHTHTKVRNFMCSQCPKRFPSTTALNIHINVHHSEVNPYKCTVCEKTFNHPSALMRHRKLHTGICEFVCEHCNKRFVRSDHLKKHIGDVHSEKSFKCELCSFTFNKAEKLKKHARSHEKPIVKRVLERCNECHQPFTDHNKLLRHLEMFHNPSNPFRCDICLKRFSQQSALGRHMKLHTDQKKSFKCSECEKTFCRLDHIKTHTLTLHNPDNPYKCSTCRQTFSTQQSLDKHIVRAHETERTMLCEFCNKAFSKRYTLQRHIRNFHDSDSGGGGGGGGSVVGVGVVGVDGVFSVADANYVNVQLNHQMISNKPELYIKEEPNKENIETDGSSSDNGNGDFGGDDDEVDDDDDDDEDDDDDEDFSLDSSSKVKADKASNKTSKADNKSESNLDEYTDSSDSDGYIPKNTNHKCLKCNKYCASSSSLKRHEQTVHTEEKDKLRNEKRLKSKPKPKPFKCDVCRKPFETLFRKNRHQVTHDEGRVRIIACRQCPERFTEYEEYQRHKVVHVKSFECDVCHKSFSTKYFLKLHYPIHMETKPFQCDRCSRSFSQASTLRRHIYLHEAEKKFMCELCGKRFHAQYLVKMHILHTHTEYRKYICSQCPKRFSSTTDLTIHTNVHHSDVNPYKCETCAKTFTHPSALRRHHRKVHTGFGEFVCQHCNKRFVRADLMDKHINTVHTLKSIKCELCPATFNTAVKLKKHARVHREPLVKPAMIVHRCMECHQPFNDPEKLARHLEMSHNPNNPFKCDVCLKRLSSQSALCRHMKLLHTMQTKSYKCNECGKSFGRLEHFKNHTLMLHNPANEFKCATCRQTYSTKQSLDKHITRVHETERTMLCQYCNKAFSKRYILQRHIRNFHDVESGISSGISYNLMGHQIDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -