Bcop013201.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bradysia coprophila
Gene Symbol
-
Assembly
GCA_014529535.1
Location
NW:20056687-20065989[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 0.0013 0.057 13.8 1.3 2 23 155 176 155 176 0.97
2 31 1.4e-06 6e-05 23.1 0.6 1 23 182 204 182 204 0.99
3 31 6.9e-05 0.003 17.8 1.1 1 23 210 232 210 232 0.98
4 31 1.8e-06 7.9e-05 22.8 0.7 1 23 238 260 238 260 0.99
5 31 6.5e-08 2.8e-06 27.3 0.9 1 23 266 288 266 288 0.99
6 31 0.76 33 5.1 1.2 2 23 303 322 302 322 0.88
7 31 0.00024 0.011 16.1 2.0 1 23 328 350 328 350 0.98
8 31 7.4e-06 0.00032 20.9 3.2 1 23 356 378 356 378 0.98
9 31 1.4e-05 0.00058 20.0 2.1 1 23 384 406 384 406 0.98
10 31 2.5e-06 0.00011 22.3 0.5 1 23 412 434 412 434 0.95
11 31 0.00058 0.025 14.9 2.9 1 23 440 462 440 462 0.97
12 31 9.9e-06 0.00043 20.4 6.6 1 23 468 490 468 490 0.99
13 31 9.7e-05 0.0042 17.3 1.9 2 23 503 524 502 524 0.96
14 31 0.00094 0.04 14.2 2.0 1 23 530 553 530 553 0.96
15 31 0.00051 0.022 15.0 0.7 1 23 558 580 558 580 0.97
16 31 6.6e-06 0.00028 21.0 1.3 2 23 588 610 587 610 0.95
17 31 0.0016 0.07 13.5 2.1 2 23 797 818 797 818 0.97
18 31 6.4e-06 0.00028 21.0 0.7 1 23 824 846 824 846 0.99
19 31 1.4e-05 0.00061 19.9 1.5 1 23 852 874 852 874 0.98
20 31 0.00012 0.0051 17.1 0.7 1 23 880 903 880 903 0.98
21 31 4.8e-07 2.1e-05 24.6 0.8 1 23 918 940 918 940 0.99
22 31 1.9e-05 0.00084 19.5 1.3 1 23 981 1003 981 1003 0.98
23 31 2e-06 8.7e-05 22.6 0.7 1 23 1009 1031 1009 1031 0.98
24 31 3e-05 0.0013 19.0 3.3 1 23 1037 1059 1037 1059 0.98
25 31 3.7e-07 1.6e-05 24.9 0.2 1 23 1065 1087 1065 1087 0.96
26 31 6.2e-05 0.0027 17.9 3.9 1 23 1093 1115 1093 1115 0.97
27 31 0.0002 0.0084 16.4 5.8 1 23 1121 1143 1121 1143 0.99
28 31 6.2e-05 0.0027 17.9 0.1 2 23 1155 1176 1155 1176 0.96
29 31 0.039 1.7 9.2 3.5 1 23 1182 1205 1182 1205 0.94
30 31 0.026 1.1 9.7 0.4 1 23 1210 1233 1210 1233 0.97
31 31 7.5e-05 0.0032 17.7 0.8 2 23 1241 1263 1240 1263 0.95

Sequence Information

Coding Sequence
ATGGATGAGGTATGTGACGAATTGTCCGACATTCAACAGTTACAAGAAGATCTCAGTGAGTTCCCGAACGAGGACGACGAAGACGAAGATGAAGATGAAGACGAACATAACGAAGAAGatgaagaggaagaagaaaacgATGAAAGCGgtgacgacgacgacgataACAACATTTTTACCTCAATGTCATTGGATGAAGAACCAGTGGAGGAAAAACCCAGTGCCGGTAATGGACTCGATATCGCCGTCAAACTGGAAGTCAGCATTCTAGAGgatgaagaaaatcaaaataataccAAGAATCAGCAGGAAAAAGTGCAGGTAAAGCGCGAACCTTCCGATGCTGAAAAAGTTCAATCCAGTGATAAAACGGGTGATGAAGCTCCGCCACCAGAGCCTCCCGGTTACGATATTTATAAGAATATAACCGAAGAGCAGCGTGAAGCAGCTAGGAAACATAACGAATGTTTCATTTGCCAGAAGCGGTTTGGTACTTTTGCCACCTTTAAACGGCATATAATCCGACACACTGGCTTAAAGAACTACAAGTGTCATATCTGCGGAAAAGCATTTGCCGAAGGCAGTTACTTAAAGGCCCATCTGATGACCCATAGTGGAACTACGCCGTACAGCTGTGATATTTGCctgaaaaaatttgcaaattcgTCCAGTCTCCATGGACACATTAAAATTCATACAGggGAAAAGCGATACAAATGCGAGATATGTGGGAAAGCATTTACCGAATCATCAACGCGACGCAAACATATGCTGGTCCATAATCCGAACAAGCAATTCAAATGCGAGATGTGCGACAAGGCGTTCAGTcgcaaaatcaatttgaatgttCACATCAAAACGCATTATCGTCAGCAGGGATTGCTGGCCGAAGGAGATGTGGTTCAGGAATGTCCGGTGTGCTTCAAAACAATTACGTACAATTTCAAGCAGCACATGAGAAACCATGAACGCGGTAAAGCGTACGCATGCAAATTGTGCGATGCGCGATTTCATCAGTCGAACAGTTTACGTGCCCATATGTCCAAACATACCGGTAAAAAGGAGTATTGTTGCACCGTTTGTTTGAAGGAGTTCAGCATGTCGTCGAATTTGACGAAACACATGAGAATACATACGGGCGAGAAACGATTCGTCTGTGAAGTGTGTCAGCGTGCGTTCACGGATTGTTCAACACTACGAAAACATCGCATGATTCACACCACCGAAAAGAACTTCTTGTGCGAGGTTTGCTCGAAAGCCTTCTCTCAGCAGACGAGTCTCCAGCTGCACATGAGGATACACACAGGGGAAAAACCACACGTTTGTAAAGTATGTTCCAAGGCCTTCCACGACGGTTCATCGTTGTCAAAGCACATGAACCTGCATCTTCCCGAGAAGCCTTTCCAATGTGAAATTTGCTTAAAGAAATTCACCCAAAAATACTGCCTGAAAAAGCATATGAAAACGCACGAGAACGATCACATAGTCAAGACTGGCGACGAATGCATCtgtaaaatttgttcaaagaaATTCGCCACTCCAACCGGACTGAAAATCCACCAGACCACACATTCAAGCGACAAGCAACATCAATGCAAACTTTGTTTGAAGAAATTCACATTGGCCAACAATTTGAGGACTCACATTGCTAAGGTCCACGTGGAAAAACCATTCGAATGCAGCATTTGCCAGAAATCGTTTGCTACGACGGAAAAACTGGACGAACATCGGGACAAGCACTTTTCGGAGAAAAAGGTCCTACCATGCGACATATGCCATAAAACGTTCAAAGCTGCTGGCAATTTACGGAAGCATATGTTAAAGCGTCATaatttggaaaatgaaatgaaaataccGAACGATATAGACAACATGCCCATGTCGATGTCGATGCCAATGTCGATGGCATCAATGTCAATGCCAATGGATGTGATGCCGAATGGCAATAATAAGCCGAATGTTTTGAATCTGTCGCAAACAATGTTTCAACGGCATGAACCGCCTAGTTGGATGATGGACGAAGAGGATTCAAATCAATCAGATGAACAATCGCAAAACGGAGATGATGACGAAGATTATGTGGAGGAACAGGATGATGAAGAGGAGGAGGACGAAGACAATAAAGATGAAGACGGTGGTGgtgatgacgatgatgacAGCCAATCCGATAATAAAAGTGATGTACTTAAACGTGAAGACAAAAATGAGTCAAACGATGATACCAGCCTAGTAACACCAAAGGACGAACCGGATCCTGATTCTGAATCTGATACGAAGCCCGAAGTCAAAGTCAAACCAGAACCAGCTCCAGAACCGGAAGAGTCATCCGGATATGACATTTATAAGAATATGACCGATGAACAGCGACAAAAAGCTTTAAAGAACAATGAATGTTTTCTCTGTGAGAAACGGTTCGCTTCATTCACATCATTCAAGAAACATATGATTCGTCATACCGGTGTCAAGAATTACAAGTGTCACATATGTGATAAGGCTTTTGCCGAAGGGAAATACCTACGTGCTCATATGAACATTCACAGTGGACGAACTCCCTATACGTGTAAAGTCTGCGaaaagaaatttgcaaGCTCATCGAGTTTACATGGCCATATGTTGATCCACACAGGTGAAAAGCGGTATAAATGTGATATTTGCAATAAAGCCTTTACGGCGTCATCCACTCGGGGCAAGCACATGAAAATGGTTCACAATCCCGAGGAACGGGCTAACCGAAAGCCATCGGAACGGAGGTTCAAATGTGAAATTTGCGAGCAGGCATTCAGCCGAAAAATGAACCTAAATGTGCACATGAAGAGTCACAGTACCTCCAGGGGTATACTAGGCCAAGACGATGAAACGGAAGAGTGCCCCATTTGCTTCAAAATTATCGCTAAGAATTCCAAATATCACATGAAAACTCACGAAAAAGGAGTGAAAGTCTACGAGTGTAAGGTGTGCGATGCCAAATTCAATCAGTCGGAAAGTCTTCGGGCCCACATGTCTCATCACACGGGTATTAAGGATTTTGTGTGCAGTGTTTGCTCAAAGGCATTTAGTGTTTCGTCACGACTAACAAAACATATGAGGATTCATACGGGCGAAAAAAGATTTGTCTGCGAAATTTGTCAGCGCGCTTTTACCGATTGTTCGGCATTACATCGCCATCGAAAGATTCACACCGCTGAAAAGAATTTCTTATGCGAGATCTGCTCCAAAGCGTTTTCACAGCCATCGAGTCTTCAACTTCATATGAGGGTGCACACAGGTGAAAAACCGCACGTTTGTAAAGTTTGCACCAAAGCGTTCCACGACAGCTCATCACTATCGAAACATATGAACCTGCATCTTCCGGAGAAACCTTTCCAATGTCAAATTTGTCTGaagaaattcaatcaaaagtACTGTCTGAAGAAGCACCTCGAAACGCATGAGAATGATCATCTCCTGAAAGATTTCGACGGGGTTTGTGAAATCTGTTCCAAAAAGTTCGGAACACCCAGCGcattgaaaattcatcaagCTGTACATTCCACTGATAAGCCCCATCAATGTAGCTATTGCTTTAAAAAGTTccgtttgatacaaaatatgaaaactcaCATCGGAAAAGTGCACATTGATAAGCCCTATGAATGCAACATTTGTCAAAAGAAAGCCTTCGCAACCATGGAAAAATTGGAGGAACATCGAGAGAAACATCTGGCCGAAAAGAAGGTACTGCCGTGCGGCATATGTCATCAGACCTTCAAAGCACCGGGCAATCTGCGCAAGCATTTAATGAAGCGTCACAATATCGAAAATGAATCGAAAGAACCAATGCACGTCGAGCAGGTGCCCAACCCAACTGTACCAATGCCACAGATGATGATGCCACCGATGCCAATGAAAGTTGTGTCCAATAATAAGGCAATGAGTGACGTTCTGAATTTATCGCATTCAATATTCCAACGGCAGGGGCATCCGAACTGGCTttag
Protein Sequence
MDEVCDELSDIQQLQEDLSEFPNEDDEDEDEDEDEHNEEDEEEEENDESGDDDDDNNIFTSMSLDEEPVEEKPSAGNGLDIAVKLEVSILEDEENQNNTKNQQEKVQVKREPSDAEKVQSSDKTGDEAPPPEPPGYDIYKNITEEQREAARKHNECFICQKRFGTFATFKRHIIRHTGLKNYKCHICGKAFAEGSYLKAHLMTHSGTTPYSCDICLKKFANSSSLHGHIKIHTGEKRYKCEICGKAFTESSTRRKHMLVHNPNKQFKCEMCDKAFSRKINLNVHIKTHYRQQGLLAEGDVVQECPVCFKTITYNFKQHMRNHERGKAYACKLCDARFHQSNSLRAHMSKHTGKKEYCCTVCLKEFSMSSNLTKHMRIHTGEKRFVCEVCQRAFTDCSTLRKHRMIHTTEKNFLCEVCSKAFSQQTSLQLHMRIHTGEKPHVCKVCSKAFHDGSSLSKHMNLHLPEKPFQCEICLKKFTQKYCLKKHMKTHENDHIVKTGDECICKICSKKFATPTGLKIHQTTHSSDKQHQCKLCLKKFTLANNLRTHIAKVHVEKPFECSICQKSFATTEKLDEHRDKHFSEKKVLPCDICHKTFKAAGNLRKHMLKRHNLENEMKIPNDIDNMPMSMSMPMSMASMSMPMDVMPNGNNKPNVLNLSQTMFQRHEPPSWMMDEEDSNQSDEQSQNGDDDEDYVEEQDDEEEEDEDNKDEDGGGDDDDDSQSDNKSDVLKREDKNESNDDTSLVTPKDEPDPDSESDTKPEVKVKPEPAPEPEESSGYDIYKNMTDEQRQKALKNNECFLCEKRFASFTSFKKHMIRHTGVKNYKCHICDKAFAEGKYLRAHMNIHSGRTPYTCKVCEKKFASSSSLHGHMLIHTGEKRYKCDICNKAFTASSTRGKHMKMVHNPEERANRKPSERRFKCEICEQAFSRKMNLNVHMKSHSTSRGILGQDDETEECPICFKIIAKNSKYHMKTHEKGVKVYECKVCDAKFNQSESLRAHMSHHTGIKDFVCSVCSKAFSVSSRLTKHMRIHTGEKRFVCEICQRAFTDCSALHRHRKIHTAEKNFLCEICSKAFSQPSSLQLHMRVHTGEKPHVCKVCTKAFHDSSSLSKHMNLHLPEKPFQCQICLKKFNQKYCLKKHLETHENDHLLKDFDGVCEICSKKFGTPSALKIHQAVHSTDKPHQCSYCFKKFRLIQNMKTHIGKVHIDKPYECNICQKKAFATMEKLEEHREKHLAEKKVLPCGICHQTFKAPGNLRKHLMKRHNIENESKEPMHVEQVPNPTVPMPQMMMPPMPMKVVSNNKAMSDVLNLSHSIFQRQGHPNWL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00246007;
90% Identity
iTF_00246007;
80% Identity
iTF_00246007;