Bcop002027.1
Basic Information
- Insect
- Bradysia coprophila
- Gene Symbol
- SMARCC2
- Assembly
- GCA_014529535.1
- Location
- NW:3272150-3281900[+]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.9 5.3e+03 -2.5 0.1 33 43 200 210 199 212 0.88 2 2 1e-13 1.1e-10 41.3 0.2 3 44 642 683 640 685 0.95
Sequence Information
- Coding Sequence
- ATGGTGTCATTGGGTCCGAAAAAGGATGGAGGACCGAACAAGGAGTTCTTCGAATCGCCAGAATCAATGCAAGGCTTCGAGCAGATTAGATTATGGTTgactaaaaattgtaaaaagTACATCCAAACTGATCCACCAACCAAGGATTATTTGAGTAAACTTATCATTGAATTCATTGAATATCAAGAAAAGAAATTCGGTAAAAATGCTACCGAACATCTACTCACCAGATTGCCGATGCGCTGCTTTCTCGATTTCAAACCTGGTGGTAGTCTCTGCCACATATTCGCCAACATGTATCGCTATAAGGCCGAGCAACGGTGgcgtaaatttgattttaccaTATCCAAAAACCCAATGCGGAAGGATCCAAACGTTCAAATGTTAATGGAAATTGAAACGGCCCTCATCGAAGCCGAATGCTTTCGAATGCCCGTTGTGTACGTGCGGCCAGACGTTGAGAAGACTttggcgagcaaagtaaagtcGATCATAACCGAACATCAGGGTGAAATTACGGAAGATGAAGAGGAAGCGTCGCACATTGTTTGTCCAATTGTCGAACCACTTCCTGAAGATTTTGCACGGCCAACATTTAGACGTGGGAATCACATTATGATCCATTGGTATTATTTCCCCGAGTCCTATGATTCGTGGGTCCCAAATACGTTTGATTTACCCGACATCATTCCTGAGAATCCAGCGTCACCGGAAAACCGTTGGAGAGTCTCTGCGTCGTGGGTTCTCGACTTAGATCAATACAACGAATGGATGGCGGAGGAAGATTATGAAGTTGATGAAAAGGGCGGCAAGAAAGTACACAAACTGCGTCTATCTGTGGAAGAATTGATGCCGATTGGGCCGGACGATAAGCGAAAGCCTGTAGCTGGGAGTAGTAAACAGAAACGGAAGCGATCACCGTCGCCTCCACCACCGAAAGGAGCCAGCAAACGGAAGAGTGGCAGATCCCCTGCTGTTTTCCAACGGAAGGGGCGAAGTGGTGAAGGTGATGATGAAGAAGATTTGACCCGTGACATGGAAGATCCAACACCCGAACCAAACATTACCGAGGTAACTAAGCCTCCAGCTACTCCATTGACAGCAGCAAGTCCTGCAACGCCACAGTCTACTAAACAGAGAGATACGGACATGCTGCCAATCAAAGGTGGAACTGTAACCGATTTGGACGAGGATATGGAGCGAACTGGGGGAGAAGATTCTCAAACGGCTAAAACCAGCGAAAATAGCAACACCCAAGAATTTCCACCGAATAAAGATGATTTGGAGGATAATGTTACTGAGCAAACGCATCACATTATCGTTCCGTCTTATTCGGCTTGGTTCGATTACAATTCCATACACGTCACCGAAAAACGAGCGATGCCCGAATTCTTTAACGgaaaaaacaaatcgaaaacaCCGGAGATCTTCATGGCCTACCGAAATTTTATGATCGACACGTATCGCTTAAATCCGACAGAATATTTAACAAGCACAGCATGTCGCCGAAATTTGGCTGGTGACGTTTGCGCTATAATGCGAGTTCATGCATTTCTGGAGCAATGGGGACTgatcaactatcaaattgaCGCAGAATCTCGCCCGACTGCAATGGGACCACCGCCCACatctcattttcatattcttAGCGATACACCATCGGGATTGCAGCCTCTTAATCCTCCGAAAACCACTCAACCATCAGCAGCAAAGGCTCTTTTTGATTTGGACaagaacaaaaaagaaaaagacacCGATGCGTCTCCATTGGGTGTCGCTGCCACTGGTTCCTCAGCAACTCCGCCAACCGCCGTCAAAACTGAATCTACTAGCGAACCGAATGGTCAATTTGGACTGAAACTTGATCAGTACTCGAAGAAACCGTCGGCACTGAAGAATAGGACCGCAGCTGGTATGTCCCGTGAGTGGTCGGAACAGGAGACTCTACTACTATTGGAGGGTCTTGAGATATATCGGGATGACTGGAACAAAGTGTGCGAACACGTCGGAACTCGAACACAGGACGAATGTATTCTACATTTCTTGCGTTTGCCGATCGAAGACCCGTACTTGGAGGACGACAGTGGCTATTTGGGACCGTTAGCTTATCAACCAGTACCGTTCAGCAAATCTGGTAATCCAATTATGTCGACTGTCGCATTTCTTGCGTCCATTGTCGATCCAAGAATTGCTGCAGCTGCAGCTAAAGCAGCCATGGAAGAATTTGCAACAATTAgaGAAGAAGTTCCGCCTGGCATCTACTACGCCCATTACAAAAACGTTGAAAAGCTTGCCGTACATGGAAAATTTGTACCGAATGCTGGATTAGACATCAGTGGTATCGCTGGCACTGGATCGGACAAAGAGGAAGAAGAATCCAAACCGCCAATGGACGAAGAAATGAAAGATGTATCAAAGAAAGACGGAGACGAAAATGAGAAAGACAAAATAGAAGAATCTAAACAGAGTGATTCTCCTCCCGCAGCTGACAAGGATTCAAGTAAGGTCGATGGAGATAAGGATGCTGAAAAAATGGACACAACTGTCGCTAACGGTGACGCGGATAAAAAAGCATTCAACGAATCTGATTTGCAACGTGCTGCAGCCGCAGCTCTGGCATCAGCTGCAGTTAAGGCGAAACATATGGCTGCTTTAGAAGAACGAAAGATCAAAAGTTTGGTGGCATTGTTGGTTGAAACGCAAatgaaaaagttggaaatcaAATTGAGACATTTCGAAGAGTTGGAAACAACCATGGAACGAGAACGTGAAGGTCTGGAATATCAGCGACAACAACTGATCACTGAACGTCAGCAATTCCATTTGGAGCAACTGAAAGCTGCCGAATTTCGAGCCAAACAACAAGCACACCATCGCTTACAGCAGGAACAACAGGGACAATGGCAGGCAGCTGCTGCAGCAGCAGCAAATTCACCATCAATTGGCCCAGTTACGCCAACAACGACGGCGAGTGCCGCATCCACACCACGAGCACCATCTGCTACCGATGCACCATCACCGGCAAGCGTTACGGGTCCTTTGACGGCACAAGCAAATTCGGTAGCTTCACCATTAGCAACAGCCTCCGTTCAGTAA
- Protein Sequence
- MVSLGPKKDGGPNKEFFESPESMQGFEQIRLWLTKNCKKYIQTDPPTKDYLSKLIIEFIEYQEKKFGKNATEHLLTRLPMRCFLDFKPGGSLCHIFANMYRYKAEQRWRKFDFTISKNPMRKDPNVQMLMEIETALIEAECFRMPVVYVRPDVEKTLASKVKSIITEHQGEITEDEEEASHIVCPIVEPLPEDFARPTFRRGNHIMIHWYYFPESYDSWVPNTFDLPDIIPENPASPENRWRVSASWVLDLDQYNEWMAEEDYEVDEKGGKKVHKLRLSVEELMPIGPDDKRKPVAGSSKQKRKRSPSPPPPKGASKRKSGRSPAVFQRKGRSGEGDDEEDLTRDMEDPTPEPNITEVTKPPATPLTAASPATPQSTKQRDTDMLPIKGGTVTDLDEDMERTGGEDSQTAKTSENSNTQEFPPNKDDLEDNVTEQTHHIIVPSYSAWFDYNSIHVTEKRAMPEFFNGKNKSKTPEIFMAYRNFMIDTYRLNPTEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQIDAESRPTAMGPPPTSHFHILSDTPSGLQPLNPPKTTQPSAAKALFDLDKNKKEKDTDASPLGVAATGSSATPPTAVKTESTSEPNGQFGLKLDQYSKKPSALKNRTAAGMSREWSEQETLLLLEGLEIYRDDWNKVCEHVGTRTQDECILHFLRLPIEDPYLEDDSGYLGPLAYQPVPFSKSGNPIMSTVAFLASIVDPRIAAAAAKAAMEEFATIREEVPPGIYYAHYKNVEKLAVHGKFVPNAGLDISGIAGTGSDKEEEESKPPMDEEMKDVSKKDGDENEKDKIEESKQSDSPPAADKDSSKVDGDKDAEKMDTTVANGDADKKAFNESDLQRAAAAALASAAVKAKHMAALEERKIKSLVALLVETQMKKLEIKLRHFEELETTMEREREGLEYQRQQLITERQQFHLEQLKAAEFRAKQQAHHRLQQEQQGQWQAAAAAAANSPSIGPVTPTTTASAASTPRAPSATDAPSPASVTGPLTAQANSVASPLATASVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -