Bcop015623.1
Basic Information
- Insect
- Bradysia coprophila
- Gene Symbol
- -
- Assembly
- GCA_014529535.1
- Location
- NW:3937066-3942685[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.5e-12 5e-09 35.6 0.1 1 39 18 56 18 60 0.92 2 2 7.8 7e+03 -3.3 0.0 30 40 126 136 125 138 0.78
Sequence Information
- Coding Sequence
- ATGCCAAGAAAATATAAGCCCAacctgaaaaataaaatataccGTAGGGCAGATCCCGAAAACATGTCTAAGGCCATTCATGCTATTGAGAGTAAATCATTGTCTATACGGAAAGCCGCTGCGAAATACAATATCAATTATTCAGCTGTTTTCCGGCGTCTCAAAAGACTTCCGGGGTCAATTAAAGCTCATGGTGGCCAACCTGCATTAAATGCTAACGAAGAATCGTTTATTGTGCACAGAATCCAAATTTGTGCAGACTGGGGGTATCCGTTGGACGCATTTACACTGAGAATGCTGGTCAAACAATATCTGGATGAATTAGGGAAGGTCATTAAAAGATTCAAAAATAACGTTCCTGGGCGAGACTGGGCCTATTCGTTTTTACATCGCCATAAAAAGGAAATATCGGAAAGACTATGTCAAAATATCAAACGAAGTCGGGCAGCTGTGTCCCCAGAAGTTATAACCGATTATTTCAAGCTCTTGGAGAACGAATTGAAGGACGTTCCacctcaaaatattttaaactaCGACGAAACCAATCTGCGAGACGATCCTGGGAAGAAGAAAGTTATTGTACGAAGAGGTTGCAAGTACCCAGAAAGAGTCATGAATAGCAGCAAGTCTTCAACTTCGATTATGTTCAGTGCCGCTGGAGACGGTACAATATTGCCGCCTTACGTTGTGTATAAAGCTGTTCATTTGTACGGCTCGTGGACACAAAACGGACCGAAGTATACCCGTTATAATAGAACCAAAAGTGGTTGGTTTGATAGTCAGTGTTTTGAAGATTGGGTACGCACCATAGCCATTCCTTACCTTAAAAAGCTTACCGGAAAGAAAGTTCTGATTGGGGACAATCTTGCTTCGCACGTATCAATGGAATTAATTCGTTTATGTCTGGAACACGATATTCACTTCATATACTTGCCAGCAAATTCTACTCATCTAACACAACCATTAGATGTTGCGTTTTTTGCACCACTGAAGCGATACTGGCGTCAAATACTCGAGCAATGGAAACTTAAAGCTGGAAGGAACATGTCCTGTGTGCCAAAGGACAAATTTCCGCGTTTGCTgaacaatttaatgaaaaaaattgaggtgAATGGTTCGAACAACATTAAGTCAGGATTCAGAAAATGTGGAATCATTCCAATTGATAAAGACGAagtcttgaaaatgtttcccGTCGAGTCAAACAATTCCGACAATCAACCAACTCAAGAAATCGAAGCACTTGACAAAGCTTTCGTGAATTTGTTGAAATCGATGCGCTATGAAGAAACCGGTAAACCGCAGAAAAAATCAAAGCTAAAAATTGCGGCTGGAAAAAGTGCTGcagtggaaaattttgattccgACTCCGGCTCTGATAACGAATTCAACGAAACCGATCAAGAATTCAACGAAACTGAACGTGAATCAGACTTTGAAGAGAACGAAGACATTGAAATCAAAGTATTGCCAACGGAGGGCAACAACAAATCAATCTCTGCGTCGATATCAGATGAGTCGCCCGACCAATTTCTACAAGCCAAAGCTTGGATTGGATAA
- Protein Sequence
- MPRKYKPNLKNKIYRRADPENMSKAIHAIESKSLSIRKAAAKYNINYSAVFRRLKRLPGSIKAHGGQPALNANEESFIVHRIQICADWGYPLDAFTLRMLVKQYLDELGKVIKRFKNNVPGRDWAYSFLHRHKKEISERLCQNIKRSRAAVSPEVITDYFKLLENELKDVPPQNILNYDETNLRDDPGKKKVIVRRGCKYPERVMNSSKSSTSIMFSAAGDGTILPPYVVYKAVHLYGSWTQNGPKYTRYNRTKSGWFDSQCFEDWVRTIAIPYLKKLTGKKVLIGDNLASHVSMELIRLCLEHDIHFIYLPANSTHLTQPLDVAFFAPLKRYWRQILEQWKLKAGRNMSCVPKDKFPRLLNNLMKKIEVNGSNNIKSGFRKCGIIPIDKDEVLKMFPVESNNSDNQPTQEIEALDKAFVNLLKSMRYEETGKPQKKSKLKIAAGKSAAVENFDSDSGSDNEFNETDQEFNETERESDFEENEDIEIKVLPTEGNNKSISASISDESPDQFLQAKAWIG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -