Bcop009884.1
Basic Information
- Insect
- Bradysia coprophila
- Gene Symbol
- -
- Assembly
- GCA_014529535.1
- Location
- NC:5413909-5415567[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.1e-05 0.081 12.5 0.0 2 35 257 290 256 299 0.77 2 4 3.4e-10 3e-07 29.9 0.1 3 44 307 348 305 349 0.86 3 4 0.0048 4.3 7.0 0.0 23 35 374 386 359 390 0.89 4 4 1.3e-11 1.1e-08 34.5 0.0 5 41 416 451 414 454 0.91
Sequence Information
- Coding Sequence
- atgGAATACTATCAAGAAATTAAATGGCACGAACATGCTAAACACCTAAAAAATAcgcagaaaaatatttacctcACTTCTGCTTACTCGGACGTGATAATTTGTGCAGGCGAAAAACGGGCAAGAGCTCACCGGCTGGTTTTAAGTCTATGCAGCGACTTGCTGTACACTATATTCAAGGAGTATCCGATAAACGAGACAGCTACTGTCATCCTACCTTGTGATCTGAACAGTCAGGTCGTAGATAGCTTGATATCTTTCATGTATACCGGAGAAGTGTTCATTGAAAATGATCTGCTGGGTGAGTTTCTGCACGCCTGTAAGCTGCTCAAACTTAAAGGATCAATACAGATAAACGACCACGACTCGACGATGGAATATTCAATGGAAGACGATACAATCCCGTTGCAATCAGATAAACTGGATACGTACGACAGTCAAATCATTATGCAAGAGGAGTACATTGTTGAGAATCAAAACGACGATGGCGTCGAAAATGCTGATGAAAGTTTCATTGAATCCTTAATTACGGTAGCACCGACAACAGTGCCAGATGACGAGCAATCAAACGCAATTGAATACCAGTCTGGTGACGATATCGATGACACGGGATGCACGGAAGAAAAATATGAGATTGACAATGAATCGTGCGGGGAATTCGAAGAGTTTGACGAAATGGAGCAGTTCGATGTTGCATTAACTACGGATAACAGCGGTATTCCTGATCAGAACGAAAATGATTGGAAAAAAAAGCCGGTTCGATACTCAGAGGCAGCACTACTTGAAGCGTTCAATGATCTGGCTAACGGGGCAACAATTATGGACACAAGCGTTAAATACAATATCCCACGGTCCACATTGTACTgcaaaattcgttcaaatACAAAGTACTCGTATCTGTATCGGTCAATTCGTGAATCCGCAATTAAAGAAGCTACAAACGCTGTGGTTTACAGCAAATTGAGTCTTCAACAAGCAGCTACCCAGTTCGGCATTGCTAAGACAGTTTTGTGGCGAAAATTGCGACAGTCCAGCGAATACAAACCCGAAGACAGGAGTCATGCTTGCCGTGAGCAGGCTATCAAAGCGATTGAAGAAGGTGAAAAGTTGTTGAACGTATCCAAAAAATACAACATCCCAATTTCGACATTGCACCGGGACAAGATTAAGCTGCTCGAACAGGGTAAGCTGCCGAAACACTGCACAGTTGTGAAACGCGAAGTGGGACCTGAATTTAAGAAACGAATTGAAGCGGCATTGGAATCGTGCAGAAATGGAATGACACAGAAGATGGCATCGCAACTACACAATGTTCCTAAAACGACCATATGGCGATATATGAACTCGAAAACGgggaaaaactga
- Protein Sequence
- MEYYQEIKWHEHAKHLKNTQKNIYLTSAYSDVIICAGEKRARAHRLVLSLCSDLLYTIFKEYPINETATVILPCDLNSQVVDSLISFMYTGEVFIENDLLGEFLHACKLLKLKGSIQINDHDSTMEYSMEDDTIPLQSDKLDTYDSQIIMQEEYIVENQNDDGVENADESFIESLITVAPTTVPDDEQSNAIEYQSGDDIDDTGCTEEKYEIDNESCGEFEEFDEMEQFDVALTTDNSGIPDQNENDWKKKPVRYSEAALLEAFNDLANGATIMDTSVKYNIPRSTLYCKIRSNTKYSYLYRSIRESAIKEATNAVVYSKLSLQQAATQFGIAKTVLWRKLRQSSEYKPEDRSHACREQAIKAIEEGEKLLNVSKKYNIPISTLHRDKIKLLEQGKLPKHCTVVKREVGPEFKKRIEAALESCRNGMTQKMASQLHNVPKTTIWRYMNSKTGKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00245570;
- 90% Identity
- iTF_00245570;
- 80% Identity
- iTF_00245570;