Basic Information

Insect: Brachypterus glaber
Gene Symbol: -
Assembly: GCA_958510825.1
Location: OY294053.1:20951819-20961863[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.092 5.2 8.6 2.4 1 19 457 475 457 475 0.98

2 8 0.00014 0.0082 17.5 2.2 1 23 507 529 507 529 0.96

3 8 0.0021 0.12 13.8 0.8 1 23 591 614 591 614 0.96

4 8 0.23 13 7.4 3.9 2 21 621 640 620 641 0.94

5 8 1.3 73 5.0 1.3 1 14 668 681 668 691 0.85

6 8 0.00033 0.019 16.3 0.2 3 23 702 722 700 722 0.96

7 8 5.3e-05 0.003 18.8 1.2 1 23 729 751 729 751 0.98

8 8 0.15 8.4 8.0 1.4 1 23 755 778 755 778 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.092	5.2	8.6	2.4	1	19	457	475	457	475	0.98
2	8	0.00014	0.0082	17.5	2.2	1	23	507	529	507	529	0.96
3	8	0.0021	0.12	13.8	0.8	1	23	591	614	591	614	0.96
4	8	0.23	13	7.4	3.9	2	21	621	640	620	641	0.94
5	8	1.3	73	5.0	1.3	1	14	668	681	668	691	0.85
6	8	0.00033	0.019	16.3	0.2	3	23	702	722	700	722	0.96
7	8	5.3e-05	0.003	18.8	1.2	1	23	729	751	729	751	0.98
8	8	0.15	8.4	8.0	1.4	1	23	755	778	755	778	0.97

Sequence Information

Coding Sequence: ATGTAcagattattaaataaatttgagttttttaatgTTGCTGCTCCTGTCCTTGAGGTTGTGAAAATAGAGGAAAATTCTGATGTTAATATTGATTATCAAGAACTTTTTAATCAGGCTTCTCAGGATTGGACTACAGACAGTCTATTAGAAGATGAAACTGGAGTTCAATTTGCCCAACCAAAAAAGCCCAGTATTGAAGTGTCGAAAACTTGCAGTAGTGCTATTGGACGTCCCAGAAAAAATGATTTAGATGACATAGAAGATGAACCACAGGGTCCTAGACCGGGTACCAGTCTAGCGCCCTTTATTGTACCCGATTTTAACGTCATAAGTGGCATGGATATTGATGGTGATGGAATCTGTAGATTATGTTTTAGTAGAACCCTagaagaaaattacattttgtcAGAAGTGAAAAGTGCTATTACAAGAATGGTTCCATCATTGgAATTTCTTATTGATGAAGAACATTGTATTTGTGATGAGTGCCTTCACTATTTGAACATTGCACATCAGTTTGTGAACACTTGTTTGCATGCTCAACAcgttataatatataaactaggAGGTGGAAAGAATGTAGTAGCGGAAACATGCGTCGACAATATATTGCCAGAATTCCAGCCAGaagtcaaaaagaaaataacacaaaatttgcCATTGGCACCCCAAAAAAAGATCACTTATCTGTCAGTTAAAAAACATCCATCTCGGCCAACACCTAAACCTAAACAAACAAAGAAAAGTGGAAACAAACcaggaaaaaaattggaaaacgaAAGTTTAAATTCTTCACGCGAAGAATTCTTAGAAAATGATTCTCAAGAAAATATAACACCTAAACCCAGCAAGACAAAtgaaaacaaacgaataaaaaaagaagaaacCGAAACTTCACATTTTTTACAGGAAGAATTATTAGAAAATGATTTTCAAGAAAATGATAACGATTTTAAAGTAAATGATAATGATTTTCAAGAAAATGATAATGATTTTCAAGAAAATGATAATGATTTTGAAGATAGGGActattttgaacaaaataaaaacgatcttgaaaaaaataaagatgATCAAGGAAAGAAAAAACCTGTTTTACGGCCTAGGCGAAAAGTGAATTTGAAGGGCATCAAAATACCGTCAGAGACAAAATTTGTAAGAAACATGGGTAAAAtcggaaaaattaaaatattgtgccCGAAATGTGATGTAATTTTTGAGGCCGAAGATTTTCTGAATTATTTTCATCAGATAAAGTGTgaaattgtgataaaaagtaATTCGTTTGTTTCTCTTTGTGATCATTGTGACCATGCGGTATGGGGAAAACGGATGGCCAAACATTTTAGTCTCAAACACAAGCAATTTCAATGTAATGGTTGTAAAACAGTATGCAAAAATGAGGAGGACTTTAAAGAGCATTGTGAGGAATGTTTAAGaggaggAAGACAACAGATAGAATGTGAACCAAAAGATGACTTAACTCCACAAGAAAAAGTTCCAAATGTTCGAAAATTCTTATGTCATTTGTGcggaaaaaattataacaatagcAATGGATTGAAATCTCATTTACTGACTCACAAAACAGTTCCATCACCTTGCGAATACTGCAGCAAACCAATATTACCAGCTTGCATGAAACATCATATACTCTCGCAGCACAAAACAAAACGTACCGCTGTTTGTGACATATGCGGAAAAACAATGTTAAGCTGCTCAATAAAACACCATAAATTATGTAAACATACTGTCAGAACAAAAAATTTCAGATGTGATGTATGCGGAAACCTATACATCTCAAAATCAAGTTTAAGGTCGCATTATATGCAGCAGCATCAAAGAAAGTATGAAAAAACTTGTCCTCGGTGTTTTAAAACGTTCAGATGTACCTCTAACCTTCGCTTACATCTGAAGAACTGTGGAAAGATTCAACCATCAGAAATTTTGATTCAGAAGTATAAGTTGTATGGTATAAAGAAAAACACAGAAGGTCGGTTTACCTGTGGAAAATGTGTGAAAACGTTTTACAACAGAAGAACAGCTTTATTCCATTatgaaataaaacataaaaataatcttgAGTATCGCAAATATGGATGCGAAATATGCGGCTTATTCTATAAtgaaaagagtactttaaacaGGCATATGGAAGCACATGCCAAAGATAAAGGAATGTTTAGATGTAATGTCTGTAATAGAAGGTACAAAAGTGAGAAAGAGTTGGAAGTGCATGCGCGAAAGCATGTCAAGAAATACAAATGTTTTGTTTGCTTTCAAGGTTTTGGAAGGGTTCATTTGATGGAAACACATGTCAAAATGGAACATCCTGATTACATAGCTGAATCTGtttag
Protein Sequence: MYRLLNKFEFFNVAAPVLEVVKIEENSDVNIDYQELFNQASQDWTTDSLLEDETGVQFAQPKKPSIEVSKTCSSAIGRPRKNDLDDIEDEPQGPRPGTSLAPFIVPDFNVISGMDIDGDGICRLCFSRTLEENYILSEVKSAITRMVPSLEFLIDEEHCICDECLHYLNIAHQFVNTCLHAQHVIIYKLGGGKNVVAETCVDNILPEFQPEVKKKITQNLPLAPQKKITYLSVKKHPSRPTPKPKQTKKSGNKPGKKLENESLNSSREEFLENDSQENITPKPSKTNENKRIKKEETETSHFLQEELLENDFQENDNDFKVNDNDFQENDNDFQENDNDFEDRDYFEQNKNDLEKNKDDQGKKKPVLRPRRKVNLKGIKIPSETKFVRNMGKIGKIKILCPKCDVIFEAEDFLNYFHQIKCEIVIKSNSFVSLCDHCDHAVWGKRMAKHFSLKHKQFQCNGCKTVCKNEEDFKEHCEECLRGGRQQIECEPKDDLTPQEKVPNVRKFLCHLCGKNYNNSNGLKSHLLTHKTVPSPCEYCSKPILPACMKHHILSQHKTKRTAVCDICGKTMLSCSIKHHKLCKHTVRTKNFRCDVCGNLYISKSSLRSHYMQQHQRKYEKTCPRCFKTFRCTSNLRLHLKNCGKIQPSEILIQKYKLYGIKKNTEGRFTCGKCVKTFYNRRTALFHYEIKHKNNLEYRKYGCEICGLFYNEKSTLNRHMEAHAKDKGMFRCNVCNRRYKSEKELEVHARKHVKKYKCFVCFQGFGRVHLMETHVKMEHPDYIAESV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -