Bgla026696.1
Basic Information
- Insect
- Brachypterus glaber
- Gene Symbol
- prdm10
- Assembly
- GCA_958510825.1
- Location
- OY294052.1:154979-160443[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0016 0.092 14.2 0.6 2 23 249 271 248 271 0.96 2 11 0.047 2.6 9.6 0.1 1 23 370 392 370 392 0.95 3 11 0.0014 0.077 14.4 2.3 2 20 397 415 397 417 0.93 4 11 0.00033 0.019 16.3 0.8 1 23 422 445 422 445 0.98 5 11 0.00097 0.055 14.9 1.9 1 20 449 468 449 470 0.95 6 11 7.1e-06 0.0004 21.6 1.3 2 23 483 505 483 505 0.98 7 11 0.58 33 6.1 2.1 1 23 518 540 518 540 0.98 8 11 0.0026 0.15 13.5 3.9 1 23 545 567 545 567 0.98 9 11 0.012 0.68 11.4 0.7 2 23 575 596 574 596 0.97 10 11 0.0039 0.22 12.9 4.2 1 19 601 619 601 624 0.91 11 11 0.28 16 7.1 4.5 1 23 638 661 638 661 0.98
Sequence Information
- Coding Sequence
- ATGGATAGTTTAGATTTATCTGAAGATTTAAATCTAATCACAAGAAATGTGGAAATTAAATGCGGCATTTGCGGTGATGATCATAACACACTGGACTGTACGTTAGTGAAAATCTCCCACCATataataGATAGGCCAATTCCTTCAAGAGCAAGACAAAGTTTACCCGATGCATTTGAAGTTGAAGTGTTGGTAGATAGCACAACTAACATTAAAACATTGGAAGCAATTGACTGTGGCACCCAGTTTGGTCCATTTCAGGCAAATAAACTTTGCAGCTTGAAACCGTCCATCACTTTTCCATTAAAAGTGTTTAATTCAGATGATGAACATTTATCAGAATATTATCTGGATACTAGCAAGGAGGATGATTGTAACTGGCTTTACTTCATCGCACCAGCTTCCAATATTGAAGAGCAAAACTTGATTTGCTATCAAgataatgataatatttattatggATCAATCAGAGATATTAATCCAGgggacattttaaaagtttggtATGCCCCACATTATGCTGAtctaatgaataaaaaaacctTGTTTATTGAGCAGAACAATGAGGTGGTAACTGAGGTTGTTGAGGATCTTCCTTCAATtgAACTAAGTAATCTAGTTAAAACTCAACAAAACCTTATGAAAAGGGATATTTGGAATTGTAAATTTTGTGGAAAAAGTGAGAATTTAGTAACAGAGTTTGCATCTCATCTTCTACATCATTACAGATCAAAATTACAAAAGCAGTGTGAAATTTGTAAGGCTACATTTAAAAGTGCACAGgtTCTAAGAAAGCATTCCAGAGTGGTACATTCAATCGAGGAACCCAAACATAAAAAATCTgaacatcaaaaaaataatacaacttCTCCATCAGTATTAAAAAATGTCGAAAATAAAGACACTATAGGAGGGCCCCTATTGAACGATATTTTGGATGGCAATGCCTCATTATTGCCTCAAACGGAATTCCATTTTAATTTGAGCAACATTGAGAATCAGAATATTTTGTTGGATAATGATAGTTTTAATGTCGACAGTTTATTAAATGACAATGTGAAGGGAATGGATCATTTTAACTTTGAATTAAAAGATGCAGAGGAGGAATTCATCTGTGATATTTGCCTGATGAGCTTTATCAAGTTAGTTTCGCTGGTTTCGCATATCGTTCAACATACAGgagaaaattattgtaaaacttGCAATAGGgttTATTCACGGCGAGAAAACCTGAAAAACCACGCCTGCAATTCATATCCAAAATTTAAATGTGAAAAGTGCGAAGCGACATTTACCAGTAAAAAATACGCTGCCCAACATATGAAAGTCGTTCACACTAAACCTTTTAAATGCAAAGATTGTTCGTTGACCTTTTCTACAAATAACTACCTAAACATGCACAAATCATACTGTAACCGAACGCCttacgtaaaaataaaaaaggcaaaatgTCCGGAATGCTTTAAGATTTTCGCAAACAATATGTATTTGCAAAAACACATGCGCAGAACCCATTCGAAAAGtgagttttacaaaaaaacccaAGATCAATATATATGTGACGTTTGCAGCAATGTGATAACCGGAAAATGCGCTTTTAATAAGcacagaaaaaaacattttacggcCGGCCATCAGTGTGGAATTTGCGACAAAATATTTCACAGGAAGGATGTATTGGGGCACCATCTGTTGACCCACGGGATTAATGAAAAGCcgGTAACATGCGAAATATGCAGCAAAAcattaaaatcgaaaaaactctTGGCCTTCCATATGGAGACACATAATGATACTACGTACAATTGCGAAATATGCAACGcaaaattcaaacaaaaaactaatttaatcaAACATTGTACAAAAAAACATTCTAAATTTGAGCCCAATGTACCAAAAGTAGCCAAATTATATGAATGTACGATTTGCAAAAGTAAAATGAAGTTAAAACATTCGTTAACTAGGCATTTAAAAAGGAGCCACGGGATAGTTAGTGATGATATATTAGATAATTTATTACCAAAAtcgtttaaattcaaaaaagcaaaccaaaaaaagaataatacgGAAGAAACCGATTTGGAAACAGATATCAGTGTTTTGGATTTGAAGCAAACCatagaaaatatgaattttaccACCGATATAAGTTGCAATGAAGAAACCAACATGGAGTTTGAGGATATGTTGAAGAAAACTACtgaaaatttaggatttttgaATGAATcgaataataaaattgtggataaTTTATTGGATTTGCCTATAGATGACGCTGTTTTGAATAAAAACGTGGTGGAGAAAGAGGTTTGCCTTTCACTGCCGGATTTATCAGATGCCGACCAAGAAATAAGATTgggtgacAACGCATACATACTTGAAAATGGTAACATAATAGAGCCTCAGGCAAATTCTGGCAGCGTAGTCATGTATATATTAGATAACATtagttaa
- Protein Sequence
- MDSLDLSEDLNLITRNVEIKCGICGDDHNTLDCTLVKISHHIIDRPIPSRARQSLPDAFEVEVLVDSTTNIKTLEAIDCGTQFGPFQANKLCSLKPSITFPLKVFNSDDEHLSEYYLDTSKEDDCNWLYFIAPASNIEEQNLICYQDNDNIYYGSIRDINPGDILKVWYAPHYADLMNKKTLFIEQNNEVVTEVVEDLPSIELSNLVKTQQNLMKRDIWNCKFCGKSENLVTEFASHLLHHYRSKLQKQCEICKATFKSAQVLRKHSRVVHSIEEPKHKKSEHQKNNTTSPSVLKNVENKDTIGGPLLNDILDGNASLLPQTEFHFNLSNIENQNILLDNDSFNVDSLLNDNVKGMDHFNFELKDAEEEFICDICLMSFIKLVSLVSHIVQHTGENYCKTCNRVYSRRENLKNHACNSYPKFKCEKCEATFTSKKYAAQHMKVVHTKPFKCKDCSLTFSTNNYLNMHKSYCNRTPYVKIKKAKCPECFKIFANNMYLQKHMRRTHSKSEFYKKTQDQYICDVCSNVITGKCAFNKHRKKHFTAGHQCGICDKIFHRKDVLGHHLLTHGINEKPVTCEICSKTLKSKKLLAFHMETHNDTTYNCEICNAKFKQKTNLIKHCTKKHSKFEPNVPKVAKLYECTICKSKMKLKHSLTRHLKRSHGIVSDDILDNLLPKSFKFKKANQKKNNTEETDLETDISVLDLKQTIENMNFTTDISCNEETNMEFEDMLKKTTENLGFLNESNNKIVDNLLDLPIDDAVLNKNVVEKEVCLSLPDLSDADQEIRLGDNAYILENGNIIEPQANSGSVVMYILDNIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -