Basic Information

Insect: Brachypterus glaber
Gene Symbol: -
Assembly: GCA_958510825.1
Location: OY294053.1:20259849-20277900[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.27 15 7.2 0.1 2 20 173 191 172 193 0.93

2 15 0.00016 0.0091 17.3 1.7 2 23 203 225 202 225 0.94

3 15 0.0093 0.53 11.8 4.0 1 23 256 279 256 279 0.95

4 15 9.7e-05 0.0055 18.0 2.0 3 23 295 315 294 315 0.99

5 15 0.011 0.62 11.6 2.0 3 23 321 341 319 341 0.97

6 15 1.2 68 5.1 0.4 3 23 348 366 346 366 0.88

7 15 0.16 8.9 7.9 7.4 1 23 374 397 374 397 0.96

8 15 0.0013 0.071 14.5 0.7 1 23 403 425 403 425 0.98

9 15 0.28 16 7.1 0.0 3 23 447 468 445 468 0.95

10 15 0.011 0.6 11.6 0.1 2 23 477 498 476 498 0.97

11 15 0.067 3.8 9.1 2.4 2 23 505 526 504 526 0.95

12 15 0.34 20 6.8 0.0 1 20 533 552 533 554 0.83

13 15 0.0071 0.4 12.1 0.9 2 23 580 601 579 601 0.96

14 15 0.47 26 6.4 1.3 2 21 608 627 607 628 0.91

15 15 0.046 2.6 9.6 0.1 1 21 636 656 636 657 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.27	15	7.2	0.1	2	20	173	191	172	193	0.93
2	15	0.00016	0.0091	17.3	1.7	2	23	203	225	202	225	0.94
3	15	0.0093	0.53	11.8	4.0	1	23	256	279	256	279	0.95
4	15	9.7e-05	0.0055	18.0	2.0	3	23	295	315	294	315	0.99
5	15	0.011	0.62	11.6	2.0	3	23	321	341	319	341	0.97
6	15	1.2	68	5.1	0.4	3	23	348	366	346	366	0.88
7	15	0.16	8.9	7.9	7.4	1	23	374	397	374	397	0.96
8	15	0.0013	0.071	14.5	0.7	1	23	403	425	403	425	0.98
9	15	0.28	16	7.1	0.0	3	23	447	468	445	468	0.95
10	15	0.011	0.6	11.6	0.1	2	23	477	498	476	498	0.97
11	15	0.067	3.8	9.1	2.4	2	23	505	526	504	526	0.95
12	15	0.34	20	6.8	0.0	1	20	533	552	533	554	0.83
13	15	0.0071	0.4	12.1	0.9	2	23	580	601	579	601	0.96
14	15	0.47	26	6.4	1.3	2	21	608	627	607	628	0.91
15	15	0.046	2.6	9.6	0.1	1	21	636	656	636	657	0.85

Sequence Information

Coding Sequence: ATGCTCAGCCAAGAGAAATACAACATCACGGAAGAAATAAGAAAAATGATTGCTCAATGTGTTCCTTCAATGGATAAACTTATTGAATTTTCAGACAAAATATGTCAGAATTGTTACTCAAATTTAAACATCTCGTATTTCTTCATAAATGTATGTTTACAAACTATTATAAGATTGGAGAAAATTACTGATGAAGgtgattttggTATGGACGATTTTGACTTCGACATCAATACAGATGACAACTTAAGCTTCCCTTTTGACTTTGACCTGAAAAAAACCGAGTTACCAGATTCTGATGTGCCCGAAATCGCTGATCACTGCTACGCCATTGATGCAAAAGACAAACTGGGTGAAATAACTGGAGTTGATAGAGTCGCTGGAGTGTGTCTGGACGACGATATTTTCGGAAATGTATTGAAAGAAATCAAAGATGCGGGAATGAAAGTTATAGATAATGTTTTGAATGAAGGAACGGGTAGAAAAAGGATAATATTATTAGgcgaAGCAGTTTTAAAGTGTCAAAAATGCTCGGCTATATTTTACACAGAGGAAACCCTCGAATTGCACAAGGGCTCGTCCGCGTGTGCGACTCCACGTATGACCATGTGCGAACATTGCGGCGCCGTTTTCAAGCAGAAGAGGAATTACTGGCAGCATTATAAGCAGGTCCACAAGCCCTTGTTGCAGTGTGGTAAATGCAAGCATCTTTCAAAAACAGAGGAGGACGCCACGAACCACAAAAATGAATGCGTGAAGAGCAAATTTGTTTGCAAAAGATGCCATCTAAGctttGATACTAAACAAGAGAAACAAAAGCATATGCTTGAGAAACACAACATAGGACCCAGACAACCTAGGCCGGCCATGAAAAACCCTCTGTGCCATGTTTGTGGAAAAGTGTGTAAAGATAGTGCTGCGTTGAGTGTTCACCAAAAGagTCATACTGGACCACAAAACTGCGATATTTGTGATAAAATATGTCCAAATCTACTTAGTCTAAAGCAACATAAACAACGTCACCGTAACACAAACCAGATCTGCGATATCTGTGGGaaggaaataaaatattcaatcaAGAAGCACATGGAGAGTCACGATACAAAGCGAGATAAAAATCATAAATGCCCCTTTTGTCCAAAGAAGTTTCTTAGTCGACATGGTTTGCGATGGCACCATAAAAATTTCCATACAACAAAATCCAGGTTTGTTTGTAATATTTGTGATGAAGCATTCTTAAGAGGTGATTATTTCAAAAGACATTTAAAAAGACATGTTACGACGGGAAAAGATCGTATTCCGTCagtaaaaaaaacgataaacgaCAAAGATATAATATGTGAGGCCTGTAACTTAGAATTTCCATCTGTAAATCAATATGAGGTTCATTTGAAGAAAGAGCACGACAAAACGTTTAGAAGAAAGTGGAAATGTAGTGTTTGTGGACTTGCTTACTTGACTTCCTGGGCTTTATCGCGACATCAGAAGAATCATAGCAGCACAAATTATCTGTGCTGTCGTGTTTGTTATGGAAAATTTGATTCTAAAAATGAGCTGGAAAAACACGAAAGATCACATAGAGTTAGGAAAAAAACGTACAAATGCGGTGGATGTGGGGAATTGTTTGCTAGGAATTTTATACTTGGGAACCATTTACTTAGATGCAGATTTTCATCTGTAAATCCGTATGAGGTTCATTTGAAGAAAGAGCACGACAAAACGTTTAGAAGAAAATGGAAATGTGATCTTTGTGGACTTGCTTACATGACTAGCTGTGCTTTGGCTAGACATAAAAAGTATCATATCGGCACAAACTATCTGTGCTGTCGTGTCTGTTATGGCAAATTTGATTCTAAAAATGAGCTGGAAAAACACGAAAGATCATATAGAGTTAGGAAAAAATCGTACAAATGCGGTGGATGTGGGGAATTCTTCGCTAGGAATTTTATACTTGGGAACCATTTACTTACTTGTAATAAGGATCTAGGACTGAAATAA
Protein Sequence: MLSQEKYNITEEIRKMIAQCVPSMDKLIEFSDKICQNCYSNLNISYFFINVCLQTIIRLEKITDEGDFGMDDFDFDINTDDNLSFPFDFDLKKTELPDSDVPEIADHCYAIDAKDKLGEITGVDRVAGVCLDDDIFGNVLKEIKDAGMKVIDNVLNEGTGRKRIILLGEAVLKCQKCSAIFYTEETLELHKGSSACATPRMTMCEHCGAVFKQKRNYWQHYKQVHKPLLQCGKCKHLSKTEEDATNHKNECVKSKFVCKRCHLSFDTKQEKQKHMLEKHNIGPRQPRPAMKNPLCHVCGKVCKDSAALSVHQKSHTGPQNCDICDKICPNLLSLKQHKQRHRNTNQICDICGKEIKYSIKKHMESHDTKRDKNHKCPFCPKKFLSRHGLRWHHKNFHTTKSRFVCNICDEAFLRGDYFKRHLKRHVTTGKDRIPSVKKTINDKDIICEACNLEFPSVNQYEVHLKKEHDKTFRRKWKCSVCGLAYLTSWALSRHQKNHSSTNYLCCRVCYGKFDSKNELEKHERSHRVRKKTYKCGGCGELFARNFILGNHLLRCRFSSVNPYEVHLKKEHDKTFRRKWKCDLCGLAYMTSCALARHKKYHIGTNYLCCRVCYGKFDSKNELEKHERSYRVRKKSYKCGGCGEFFARNFILGNHLLTCNKDLGLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -