Bgla012192.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Brachypterus glaber
Gene Symbol
-
Assembly
GCA_958510825.1
Location
OY294046.1:9246476-9249433[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 4.7e-05 0.0026 19.0 3.1 1 23 266 288 266 288 0.98
2 12 1.1e-07 6.3e-06 27.3 2.7 1 23 294 316 294 316 0.99
3 12 4.8e-05 0.0027 19.0 4.5 1 23 322 344 322 344 0.99
4 12 1e-05 0.00058 21.1 4.1 1 23 350 372 350 372 0.97
5 12 0.0045 0.26 12.8 5.8 1 23 378 400 378 400 0.99
6 12 0.00032 0.018 16.4 3.7 1 23 428 450 428 450 0.96
7 12 0.035 2 9.9 4.8 3 23 458 478 456 478 0.97
8 12 0.0003 0.017 16.5 2.9 1 23 488 510 488 510 0.98
9 12 0.87 49 5.6 0.4 9 23 570 584 568 584 0.92
10 12 0.87 49 5.6 0.4 9 23 762 776 760 776 0.92
11 12 2.2 1.3e+02 4.3 0.2 10 23 827 840 825 840 0.95
12 12 0.65 37 6.0 1.3 8 23 889 904 888 904 0.92

Sequence Information

Coding Sequence
atgacaACAATTGTAGTAGTAAAGAAAGAAGAATATTTATTTGTAGATGAAGACCATGCAAGTTTGaagaatataattattataaaggaaGAATTTGAAAgtgaagaaattaaaaaacatgGAGTAACATTTAGTACTGAAGAATATGAAGATGTCTCTAATGATATTCAACCAATAAAGAATGGAAACATAAAGGATACATTTTACAGTGAAGATATAGAAATGAAAATTGAAGAGCAtgaactaaaatttaatatccATGAAAATGATGATCACTCCAGTGATATTCaaccaataaataaaagtgACAAAATAAAGGAAAACTCTGAAAGTGAAGACATAAAAACAGAGATTGAAGAACAtgaactaaaatttaattttaatgaaaacgaTGATCACTCCAGTGATATTCaaccaataaataaaagtgaaaaaataaacGCAAACTTTGGAAGTGAAGATATAAAAATAGAGATTgaagaaaataaactaaaatttaatgataatGAAAATGATGATTTCTCTAGTGCTATTCAATCAATTAAGAAAAGTGAAGAAATAAACGCAAACTCTGaaagtgaaaatataaaaattgagaTTGAAGAACatgaactaaaatttaatgttaataaaaatcATGATTGCTCCAGTAATATTCAACCAATAAATGAAAGTGAAACAATAAACgcaaactttgaaaataaagatATGAAGATAGAGATTGAAGAACATGAAGTAAAATTCAATATTCAAGAAAATGACAACTGCTCTGATGATACAGATCCAACGAAACCGTATACGTGCGATTATTGCCAAAACAAGTTTAAACACAAGAGCAGTTTAATACAACATATCCTAATACATACAATTGGTAATCAATACAAATGCAATTACTGTAACAAAAAATTTAGCCAGAACAGTACGTTAACTGTGCACCTTCGAATCCACACTGGTGAAAAGCCATATAAATGTAATTATTGTCAAAAAAAGTTcacttataaaaatatgttcaaAGACCACGTTAGGGTCCACACTAATGAAAAGCCGCATGTGTGTAAAATTTGCAAGAAACAGTTCAGGACATATTCCTCCTTAAAAAATCATATGATATCGCACAGTGAAGAACAAAAATATGAATGCCACATTTGCCAGAATAGgtataagcatgtaaaatctCTAAAGAACCATATTAAATCACATTCAGACACGAATAAACCCACGTTTAAACGCAAATGCGATAGCAACACCCAATTAGGTCGAAAAGCACTTGATGAAAAGCCGTATCTATGTGAAATTTGCAAGAAACAATTCAAGAAATGTTCTACCCTAAAAGGGCATATGATAACGCACAGTGAAGAACAAAATTATGGATGTCACATATGTCAGAATAGGTATAAGCATTTGAGATCTCTAAGGAACCATATCAAATTACATTCAGACACGAATGAAAATACGTTTAAACACAAATGCGACATTTGCAATAAACTATTTaacgaaaaaaacaaattaaacagaCATCTTAATGTACATCTTCGCGATAAACAGCAAATTACAACACACAGTGGCAGATCAATTCTTGAAAACCAATCGAACCAAAGCAAGACCCAAGTTAGTCAAAATACACCTTTAACGCCACATTTTGGAACATACCGTAGTGCGGTTGAATTAATTCAAGGAAAATTACACAACGGTGACAAAACCAAAACACAATTTAGTCAAAAACAACCCTTAACTCAGCATATTAAAACACATAGTGGTGCATCATTTTTTGAAAACCGTTTCAACCAAAGCGACCCCCAATTTAGTAGAAAAACACCTTTAACCCCACATGTTGAAACACACCGTGGTACAGTTGAATTAATTCATAAGAACTCATACGACTATGACAAAATCAACACACAATTTCGTCATAAACACCCTTTAACTCAGAATATTACAACACACAGTGCTGCATCATTTCTTGAAAACCTTTCCAACCGAACTAACACCCAACTTAgtcaaaaaaccgttttaactCCATATGTTTTAACACACTGTGGTGCAACTGAATTTATTCATGGAAACTTACACAGCGGTGACAAAAGCAACACACAATTTAGTCAAAAACATCCCATAACTCAGCATATTAAAGCACATAGTGGTGCatcattttttgaaaacagattCAACCAAAGCAACCCTCAATTTAGTCAAAAAGCACCTTTAACTCCACATGTTGAAACATACCGTAGTGCGGTTGAATTAATTCAAGGAAAATTACACAACGGTGACAAAACCAAAACACAATTTAGTCAAAAACAACCCTTAACTCAGCATATTAAAACACATAGTGGTGCatcattttttgaaaacagattCAACCAAAGCAACCCCCAATTTAGTCAAAAAGCACCTTTAACTCCACATGTTGAAACACACCGTGGTACAGTTGAATTAATTCATAGAAACTTATACGACGGCGACAAAACTAAGTCACAGTTTAGTCAAAAATACCCCTTAACTCAGCATATTACAACACATAGTGGTGCATTATTTCTTGAAAACCAATCCACTAAAAACAACTCCCAATTTAGTCAAAATGCACCTTTAACGCCACATGTTGAAACACACCGTGGTGCGGTTGAATTAATTCAAGGAAAATTACACAACAGTGACAAAACCAACACACAATTTAGTCAAAAACACCCCTTAACTCAGCATATAAAAACACATAGTGGTGCatcattttttgaaaacagattCAACCAAAGCAAACCCCAATTTAGACAAAAATACCCCTTAACTCAGCAAATTACAACACATAGTGGTGCATCATTTCTTGAAAACCAATCCACCCAAAACAACAGCCAATTTAGTCAAAATGCACCTTTAACGCCATATGTTGAAACACACCGTGGTGCGGTTCAATTAATTTATAGAAACTTATACAACGGCAACAAAACACAATTTCCTCAATAA
Protein Sequence
MTTIVVVKKEEYLFVDEDHASLKNIIIIKEEFESEEIKKHGVTFSTEEYEDVSNDIQPIKNGNIKDTFYSEDIEMKIEEHELKFNIHENDDHSSDIQPINKSDKIKENSESEDIKTEIEEHELKFNFNENDDHSSDIQPINKSEKINANFGSEDIKIEIEENKLKFNDNENDDFSSAIQSIKKSEEINANSESENIKIEIEEHELKFNVNKNHDCSSNIQPINESETINANFENKDMKIEIEEHEVKFNIQENDNCSDDTDPTKPYTCDYCQNKFKHKSSLIQHILIHTIGNQYKCNYCNKKFSQNSTLTVHLRIHTGEKPYKCNYCQKKFTYKNMFKDHVRVHTNEKPHVCKICKKQFRTYSSLKNHMISHSEEQKYECHICQNRYKHVKSLKNHIKSHSDTNKPTFKRKCDSNTQLGRKALDEKPYLCEICKKQFKKCSTLKGHMITHSEEQNYGCHICQNRYKHLRSLRNHIKLHSDTNENTFKHKCDICNKLFNEKNKLNRHLNVHLRDKQQITTHSGRSILENQSNQSKTQVSQNTPLTPHFGTYRSAVELIQGKLHNGDKTKTQFSQKQPLTQHIKTHSGASFFENRFNQSDPQFSRKTPLTPHVETHRGTVELIHKNSYDYDKINTQFRHKHPLTQNITTHSAASFLENLSNRTNTQLSQKTVLTPYVLTHCGATEFIHGNLHSGDKSNTQFSQKHPITQHIKAHSGASFFENRFNQSNPQFSQKAPLTPHVETYRSAVELIQGKLHNGDKTKTQFSQKQPLTQHIKTHSGASFFENRFNQSNPQFSQKAPLTPHVETHRGTVELIHRNLYDGDKTKSQFSQKYPLTQHITTHSGALFLENQSTKNNSQFSQNAPLTPHVETHRGAVELIQGKLHNSDKTNTQFSQKHPLTQHIKTHSGASFFENRFNQSKPQFRQKYPLTQQITTHSGASFLENQSTQNNSQFSQNAPLTPYVETHRGAVQLIYRNLYNGNKTQFPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-