Basic Information

Insect: Brachypterus glaber
Gene Symbol: -
Assembly: GCA_958510825.1
Location: OY294053.1:20761176-20763263[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 5.7e-06 0.00033 21.9 2.6 1 23 107 130 107 130 0.97

2 10 0.00026 0.015 16.7 2.8 2 21 247 266 246 269 0.95

3 10 0.00044 0.025 15.9 2.8 1 23 275 297 275 297 0.99

4 10 0.45 26 6.5 4.5 1 23 303 325 303 325 0.85

5 10 0.064 3.6 9.1 2.0 1 21 331 351 331 354 0.94

6 10 2.9e-05 0.0016 19.7 2.4 1 23 362 384 362 384 0.97

7 10 2e-05 0.0011 20.2 3.8 1 23 390 412 390 412 0.98

8 10 0.00019 0.011 17.1 1.8 1 23 418 441 418 441 0.98

9 10 3.3e-05 0.0019 19.5 4.0 3 23 458 478 456 478 0.98

10 10 0.0041 0.24 12.9 4.3 1 23 484 507 484 507 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	5.7e-06	0.00033	21.9	2.6	1	23	107	130	107	130	0.97
2	10	0.00026	0.015	16.7	2.8	2	21	247	266	246	269	0.95
3	10	0.00044	0.025	15.9	2.8	1	23	275	297	275	297	0.99
4	10	0.45	26	6.5	4.5	1	23	303	325	303	325	0.85
5	10	0.064	3.6	9.1	2.0	1	21	331	351	331	354	0.94
6	10	2.9e-05	0.0016	19.7	2.4	1	23	362	384	362	384	0.97
7	10	2e-05	0.0011	20.2	3.8	1	23	390	412	390	412	0.98
8	10	0.00019	0.011	17.1	1.8	1	23	418	441	418	441	0.98
9	10	3.3e-05	0.0019	19.5	4.0	3	23	458	478	456	478	0.98
10	10	0.0041	0.24	12.9	4.3	1	23	484	507	484	507	0.96

Sequence Information

Coding Sequence: ATGGTTGATTTCGATGATGTGTGTTGTATTTGTCTGGATGTTAAAGTgttaattcaaataaataagATTGACGAAAACAATGGTTTTGCTATTTATGAAGAAATTTTATCCATTGCACCAAACTTGgtttggtcaaaaaaatttagtaTATGCCAAGACTGTAAAGAAAAGGTTTCTTTAACTTACCAATTCCTAACAATCTGCAAAACGAGTGAAAACTTTAGAAAAGAAAATTTACCATTGAGcgaaattttacatgaaaatttaaataaatcttgcAGTTTGGTTGAAGACCTTAAGCCTGTATTcccagaaaattttaaatgtgatatttgcagtaaagaatttAAAAGATCAAAATCGCTAAAAACTCACATAacaaagttacataaaaaaattaaaaaatacaaaccaCAAGAAACAAAAGTAGTAGAAGAAACGGAAGAGCTGAAAGAagaattgataaaatttaacatagAAAAACTAGAAGCTATTGAAGATGAACCTTTAGACAATATAATTGCACTAATTGAGCCTAGAAACAAAGTTAAAATTGATTACACTGAAAAAGAAGATGAATATACAGACGTGTTTAAAGACCTCAGTGATATTGATAGCCCTTATAACTGTGATGAAAACGAATCTGATGATCTTCCAGAacccaaaaaaccaaaacaagaaGGAAAAAAGACTGGCAAACGGGGACGTAAGACAAAATCAATAATAAAACTACCCGTTACATGTGAGTTTTGTGGTAAAGACTTTAATCGTAAACAACATTTACTAGCCCACATTCGATGTATACATACTTTCGAAAAACCTTACAAATGTGACCAATGTGACGCAAAATTTTCGTTGTCACATAGTTTGTTAGTACATAAAAGAAGGCATAATGATGACCGAAGGTATGTCTGTACTTACTGTGGAAAGAAATTTTTATGTTCAACAGACTTAGTGCATCACAACAAAATACATTTGAATAAAAGAGAATATAAATGCGAGCCTTGTAACAAAAGTTTTAATACAATTTCTGTACTGCAGATACACAAAAAATGTGTACATACAGATCCCGAGTTATGGAAACATATTTGCAGTTATTGTAATCGAAAGTTTCCTATAAAAAGCAGTTTAACAGCGCATTTAAGAAGACATACTGGCGAGAAGAATTTTTCATGCAATATATGCGGTAAATGTTTCTATGATAAGAAAATGGTAGAAAACCATTACAGAAGCCACACCGATGAGCGATTGTTCAAGTGCCATTTATGCGAAAAAGACTACAAAGATCGAGGAGGCTTAAACCTTCATTTAAAAAAGGTACATAACGTCGGTAACGCCACAATACCTCCTCCACCTCCAAAAAAATTCGGTTGTCATTTATGTCCAAAAGCCTTTTCAAGCCGTGGGAAGTTACAGAAACATATATGCACACATACAGGGGAAAAAATGTTCAATTGCCACTTGTGTGATAAAAAGTTCAATGATAGTTGGTATAAAAAGGTACATTTGCAGAGAAAACACAACTTTAATCCTTCAGATGAAACAAAGAATGCAAATACTCCTGCTGTTGTACCCCAAGTTATTAACACTTCGTCTGTACAGACGACGAGTATACAGACAAACTATGTGCAATCAAATCATAATGCGCAGGAAAATATTACGCAATTGACGACGATGCAGCCGATACCGCTGATGCAGGAGTATGTGATAAAGCAGGATTTGCTGACGCACGAGCAGATAAGAATGCCTCAGCAGATTATTTTGCAGCAGAGTAATATTCATATGCAGAGTGGGATACAATCGGGACATTCTTCCCCATATTAA
Protein Sequence: MVDFDDVCCICLDVKVLIQINKIDENNGFAIYEEILSIAPNLVWSKKFSICQDCKEKVSLTYQFLTICKTSENFRKENLPLSEILHENLNKSCSLVEDLKPVFPENFKCDICSKEFKRSKSLKTHITKLHKKIKKYKPQETKVVEETEELKEELIKFNIEKLEAIEDEPLDNIIALIEPRNKVKIDYTEKEDEYTDVFKDLSDIDSPYNCDENESDDLPEPKKPKQEGKKTGKRGRKTKSIIKLPVTCEFCGKDFNRKQHLLAHIRCIHTFEKPYKCDQCDAKFSLSHSLLVHKRRHNDDRRYVCTYCGKKFLCSTDLVHHNKIHLNKREYKCEPCNKSFNTISVLQIHKKCVHTDPELWKHICSYCNRKFPIKSSLTAHLRRHTGEKNFSCNICGKCFYDKKMVENHYRSHTDERLFKCHLCEKDYKDRGGLNLHLKKVHNVGNATIPPPPPKKFGCHLCPKAFSSRGKLQKHICTHTGEKMFNCHLCDKKFNDSWYKKVHLQRKHNFNPSDETKNANTPAVVPQVINTSSVQTTSIQTNYVQSNHNAQENITQLTTMQPIPLMQEYVIKQDLLTHEQIRMPQQIILQQSNIHMQSGIQSGHSSPY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -