Basic Information

Insect: Brachypterus glaber
Gene Symbol: -
Assembly: GCA_958510825.1
Location: OY294047.1:393953-399352[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00072 0.041 15.3 4.4 1 20 135 154 135 155 0.95

2 8 0.034 1.9 10.0 2.5 1 23 163 185 163 185 0.98

3 8 8.7e-05 0.005 18.2 1.1 1 23 191 213 191 213 0.94

4 8 2e-05 0.0011 20.2 0.7 1 23 219 241 219 241 0.92

5 8 1.5e-05 0.00084 20.6 0.4 2 23 248 269 247 269 0.96

6 8 8.1e-05 0.0046 18.2 2.1 1 23 275 297 275 297 0.97

7 8 2.5e-06 0.00014 23.0 0.6 1 23 303 325 303 325 0.98

8 8 2.5e-06 0.00014 23.0 2.0 1 23 331 354 331 354 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00072	0.041	15.3	4.4	1	20	135	154	135	155	0.95
2	8	0.034	1.9	10.0	2.5	1	23	163	185	163	185	0.98
3	8	8.7e-05	0.005	18.2	1.1	1	23	191	213	191	213	0.94
4	8	2e-05	0.0011	20.2	0.7	1	23	219	241	219	241	0.92
5	8	1.5e-05	0.00084	20.6	0.4	2	23	248	269	247	269	0.96
6	8	8.1e-05	0.0046	18.2	2.1	1	23	275	297	275	297	0.97
7	8	2.5e-06	0.00014	23.0	0.6	1	23	303	325	303	325	0.98
8	8	2.5e-06	0.00014	23.0	2.0	1	23	331	354	331	354	0.97

Sequence Information

Coding Sequence: atgtcCCTTATAGCATGTTTACAGTGTAATAAAGTGTCtgaaaattctttaaatagACTTGTTCAGGATAGTTGTGGTCACCGAAAATGCAGAGTATGTTTGTTACAAGATGAAGAAAATTGCCAACAGTGTTTAAAGGATgatgttaaaaagtttaaatttaataataataatgatattttatcaGATAAAGCACAAATAGATACAAACAGACCAGTTTTAAACAATACCCAAGAACCTAAAACAATCATTGTTAGTAATAAGCAAAATTTACCTGAAGCAAGTAGTTTTAAGCATTTGAATGGCAGCATTAAGCAAAATAGGCAAACTGATAAAAAGAAGaagacaataaatattttaaatttatccaagCACATAACGGTAGATTCAAATTTACTCTCGTATCATTGTACGATTTGTAATAAATCATTTACAACAAAAGATCATGTTAAGTACCATACATATTGTGCAGGAGCAGTGAAACCCCATAAATGCAACTTGTGCTTAAAAGAATTCATCCTAAAAACCCAGTATGATATTCACATGCTCAAACATAATCAAAACAAGGCATTCATCTGCAACATATGCAATAAAGGGTTCTACGAGAAAAGCAAATTAAACAGACACTATGGTTTGCACAGTTCCTCAAAAAATCACATCTGTTCGGAATGTGGAAAAGGGTTCAGAAGCAAGGAGTCACTAAAAGTGCATTATGTCGCACATAAAGGGGACAAACCACTTACTTGCAGCGTGTGTCCCGCgaaatttaataatttgtcgAATTTAAAGAGACATCTTATTTCACACACtagtgaaaaaaatcatatgtgTGACCAGTGTGGAAAGAGATTTAAACTGAAATGGGCTTTATCTGTCCACAGAAGATCGCACCTCAGAATACGGCCGTTTGAATGCTCAAATTGTAGTAAATCCTTTGCCAATAATAAAGATTTACAAAGGCATGTTCTTATTCATATGGAATCAAAGGCCTACAGTTGCAGCGAGTGCAAATTGAGTTTCAACAGAAAAGATAACCTCAGCAGACACATCAAAAACACCCACCCGGGCATGGgtgtgaaaataataaaaacggaACTGAAAAAACCGCCGGAAGTGCCGAAACCTGTCGACAACCCAAACGCCATCAACGTCATCACAGCATCACCAGCTTTGTGTAAAGCCAAAATTGAAAAAGACGAAAAAATTGCACAAGaagcaaaaaatattacaagTAGAGCCGGTTCTGTAATAAATGGTCCTCCGAAATTAATGTTTAAAACGTCAGCATTTAGACATCACTATAACATTCagagAGACTCTTCTCCAAAAAAGACTGATTCGGTAGAAATCTGGCAAAAAATCCTATCATCTTCATCTGCCAACACAGAAAAGAGCGAGAAAACCGATAAAATCCCTCTACCGTCCACTTCCGCAAGTGtcagtcaaaatattttatccacatTTTCCACAGAAGCGCTTCACTACGAAACTTCTTTCCAAAACAGAAAGCATGCcatgattaaaaatattaaatttaaggttCCTAAAGAGTACACGCAATATTCCAAACCACAAACGGCCACCAATGAAGGGGTACCAACTGAATCTTCTTTAAATATAGAGACTGAATTTCCCAAGACTAAAATTTACGCAGAATTAAAACCAGTTGCAAATATTGCAACCAGTGTTatcgtaaataataataatcagcCTGCTAGTATGCACTGGAGACGTAGAACCTCACAAaatttaaaccttaaaaattaa
Protein Sequence: MSLIACLQCNKVSENSLNRLVQDSCGHRKCRVCLLQDEENCQQCLKDDVKKFKFNNNNDILSDKAQIDTNRPVLNNTQEPKTIIVSNKQNLPEASSFKHLNGSIKQNRQTDKKKKTINILNLSKHITVDSNLLSYHCTICNKSFTTKDHVKYHTYCAGAVKPHKCNLCLKEFILKTQYDIHMLKHNQNKAFICNICNKGFYEKSKLNRHYGLHSSSKNHICSECGKGFRSKESLKVHYVAHKGDKPLTCSVCPAKFNNLSNLKRHLISHTSEKNHMCDQCGKRFKLKWALSVHRRSHLRIRPFECSNCSKSFANNKDLQRHVLIHMESKAYSCSECKLSFNRKDNLSRHIKNTHPGMGVKIIKTELKKPPEVPKPVDNPNAINVITASPALCKAKIEKDEKIAQEAKNITSRAGSVINGPPKLMFKTSAFRHHYNIQRDSSPKKTDSVEIWQKILSSSSANTEKSEKTDKIPLPSTSASVSQNILSTFSTEALHYETSFQNRKHAMIKNIKFKVPKEYTQYSKPQTATNEGVPTESSLNIETEFPKTKIYAELKPVANIATSVIVNNNNQPASMHWRRRTSQNLNLKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -