Bgla005159.1
Basic Information
- Insect
- Brachypterus glaber
- Gene Symbol
- PRDM10
- Assembly
- GCA_958510825.1
- Location
- OY294044.1:51098141-51109188[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00071 0.041 15.3 0.2 2 23 416 437 415 437 0.96 2 13 1.6 92 4.7 0.1 2 13 469 480 468 493 0.80 3 13 0.0027 0.16 13.4 0.1 1 23 511 533 511 533 0.93 4 13 0.00064 0.037 15.4 1.7 1 23 544 566 544 566 0.96 5 13 0.018 1 10.9 3.0 2 23 579 600 578 600 0.96 6 13 0.083 4.7 8.8 2.6 2 23 609 630 608 630 0.97 7 13 0.0082 0.46 11.9 0.2 1 20 637 656 637 659 0.92 8 13 0.00029 0.017 16.5 1.6 1 23 665 688 665 688 0.96 9 13 0.00094 0.053 14.9 1.9 1 23 693 715 693 715 0.96 10 13 3e-05 0.0017 19.6 1.1 1 23 721 744 721 744 0.94 11 13 0.017 0.96 10.9 1.7 1 23 776 799 776 799 0.97 12 13 0.00014 0.0079 17.5 2.3 1 23 821 844 821 844 0.97 13 13 0.0082 0.47 11.9 1.5 3 23 886 907 884 907 0.96
Sequence Information
- Coding Sequence
- ATGGACTCTATAGTCCAGGGCCCCTGTGACAATGGGGGCCAAGATTTGAACTTGGTAGATGCTTCAGAATGGTCCGATACAAACCCTGAAATGGCTACTAATAATTCCACACTTTTGTACATAGCGGTGGAATATGTAAAAGACCAATCCAATATACCCAGTCAAGAAGTATACAGTGATTTTGATCCTCATGTTAGCCCTTTGGACCCTAACATGAGTTCTGTAGCCAGGTACAGTCCTGTATATAATGAACAAACACATGAATATAATAATGTTGTTTATGTAACTTCAAATTCACAATCTGAACAGCATGCAAATGCATCAATAGAAAATATACCAACGGTTTTAAGCAAtaatgatataaataatcaaTATTTAGAACTTGACAATGCTGGTAATATAGTTAGGAACAGTAATACTGACAATCTACAACTGGTAGCTCCTCATAACGGTTCTGAGCAAGAAGTTGAATTGCTGATAACTGATGAAGCAACTGGTATATCATACAGTGTCAGCACCCAAGAATTGCTTGTTGAAAGATGCATGGAAGATCAGCAAATATTGAACGTTTTAAATGTGCCTGATCATTTACTTGATTCTGATCTTTTGGAGTTAGCTAATGCTACAACAGAATTGAATGAAAATATGATGCAGGTTGACGATCAGACTGTGAGCTACATGAATAAGCTATCTCACAACGATATTGTGCAGACATTAAATAGTGAAGATGTTAAGTATAAAATGGAAACTAGGGGCTGTTTGAAAACTGAAATTGAAGAGGAAGATGAACAGCTGAtgtcCTTGTATAGCATAACAGATCAGCCAATTTTATCCAGAGCTAGGGCAACCCTACCGGACTCATATTTGACAATAAATGCTATAAATGAAGaatTGGGAGTATTTGCAAAGAAAGGTATCCCAAAAAGGACCCAATTTGGACCTCTTGAAGGGCTGTTGCATATAAATGATCCAGAGCAAAAATACAATATTCATTTTTTGATTGAACTTAATACTGGAATCTATAGAGTAGATGTTTCCGATGAAAacAACGCAAATTGGATGATCTTCGTCCGCAAAGCCAACAATTACGAGGAGCAAAATTTACTCATCACTGAAGAAAACGGTTCTATTTACTTCACGAGCTGCAAAATGATCAGTCCCAAACAAGAATTGAGAGTAGGTTATTCGCACGCGTACGCCCAGTTGCATAATTTGAAAGTTCTGAAGCCGATTCCCGAATCCTGGCCCTGTTTCGAATGTAGTTTGACCTTTCCCAGTTCCGAAAAACTTCAGAACCACCTGAATGTACACGATGAAGAGATCGAAGACGAAAACTCGAAACCGCGGAAAAAGTCGGCGAGGAAATCGAAGCAGACGCTGAAAAAGTTTGAAACGGAGGCTCTGGAGTGTAACATATGCGGGAATATATTTTCGCAGTATAATTATGCTGGTTTGAAGAATCATCTGACTGAAGTGCATAATTTGGTCCGCCCTTTGTCTGTTGAAGAATCGTTTTCTATtgttttAAACTACGTTTGTGATTTATGCGAGACAAGTTTTCGTTCCGAAGCTTTGTTGAAAATTCACAACTTGGACCACGACCCTGATTCGTCGGAAGAACAGACCAATCACGTTTGCCCGTCTTGTTCGAGAAAATTTCCGACTCAACGGCAACTTTCCACTCATATTTTGCAGCACGCcttgcctaaaattattttggaaaagGAAAAATGCAAATGTCCGGTTTGTTGGAAATGTTTTTTGACTGGGGAAAGACTTCAGAGGCACATGCTGGTTCATGGATCTGACGAGCACAAACCACTAAAATGCGAGGTTTGCCACAAAGGTTTCCTAAACAATTCTGCCTTAGCCTGCCACATAAAAACCCACTATGCCGGACAAAACCTCTTTGAGTGTCCAATTTGCAACGAAAAATTCGATCAAATTCTGCAGCTTAAACAGCACGTACCTAAACACTGTATTGACAACCAGTTCACATGCCCcacttgcaaaaaaatatttaaaacatacagCGTTATCCGAAAACACATCAGGGCTTTTCACTCTGAGAGAAAATTTGCTTGTAAACATTGCCCTAAAAGATTTCCAACAGTAGACAAGCTGCAAATGCATTCTTTGCGACATTCTGATCACAGGGAATTTTTGTGTTCGGACTGCGGAGTACAGTTTAAAAGAAAGGATAAATTAAAAGCACACATAAAAAATAGACATTGCGCTTCTAACGTTTTACTTCCTAaggaaaacagaaaaaacagtaaaaaattcaTCCCGAAAGTTGAACCTACAGATTTTCAccgatttatttataaatgtcaCTCTTGCCTGGTGGGTTTCAAGCGCAGGGGCATGTTGGTGAATCATTTAGCGAAAAAACACCCAGATATAAGTCCAGATACGGTCCCAGAGTTAAATCTACCTATCCTGCAAACAACAAGAGATTATTATTGTCAATACTGtgataaagtttataaaagtaGCTCGAAACGTAAAGCACATATTTTGAAAAACCACCCGGGCAACCCTTTACCGACGTCGAACAGAAGACAGGGCAGTAACGCCGTACAGGAGGTTGTAGCGTTGCCTAACGCCAGTTTCTCGCAAACTGTGGGTAGCATAACGACGAGACCGCAAAACTGCCAGTGGTGCTTCAAGCAGTACGCAAGCAAGGCGAAACTGTTGCAGCATCAGCGCAAAAACCATTcagaaaatttcgagtcgaaaTTGGACATAGATGATATTGATATTAGTTATACGGATTTACCCGAAAGTAAAACTGTATCAGTTATAAGCAATGAGATTGTGGGGTACACTAAAATCGAACCGTATAGCGATAAAGATAGGGAATATAACGATAAAATAGTAAGCGATCAAAACTTTGATGATATACCCATTAACGAGAATGTTTTTATCGATGGTACCGATTTGGATAATTCAAACTTGTATAGTCTAATGCCAACACGCAATGgtctGTTGCCACCGCGTTGA
- Protein Sequence
- MDSIVQGPCDNGGQDLNLVDASEWSDTNPEMATNNSTLLYIAVEYVKDQSNIPSQEVYSDFDPHVSPLDPNMSSVARYSPVYNEQTHEYNNVVYVTSNSQSEQHANASIENIPTVLSNNDINNQYLELDNAGNIVRNSNTDNLQLVAPHNGSEQEVELLITDEATGISYSVSTQELLVERCMEDQQILNVLNVPDHLLDSDLLELANATTELNENMMQVDDQTVSYMNKLSHNDIVQTLNSEDVKYKMETRGCLKTEIEEEDEQLMSLYSITDQPILSRARATLPDSYLTINAINEELGVFAKKGIPKRTQFGPLEGLLHINDPEQKYNIHFLIELNTGIYRVDVSDENNANWMIFVRKANNYEEQNLLITEENGSIYFTSCKMISPKQELRVGYSHAYAQLHNLKVLKPIPESWPCFECSLTFPSSEKLQNHLNVHDEEIEDENSKPRKKSARKSKQTLKKFETEALECNICGNIFSQYNYAGLKNHLTEVHNLVRPLSVEESFSIVLNYVCDLCETSFRSEALLKIHNLDHDPDSSEEQTNHVCPSCSRKFPTQRQLSTHILQHALPKIILEKEKCKCPVCWKCFLTGERLQRHMLVHGSDEHKPLKCEVCHKGFLNNSALACHIKTHYAGQNLFECPICNEKFDQILQLKQHVPKHCIDNQFTCPTCKKIFKTYSVIRKHIRAFHSERKFACKHCPKRFPTVDKLQMHSLRHSDHREFLCSDCGVQFKRKDKLKAHIKNRHCASNVLLPKENRKNSKKFIPKVEPTDFHRFIYKCHSCLVGFKRRGMLVNHLAKKHPDISPDTVPELNLPILQTTRDYYCQYCDKVYKSSSKRKAHILKNHPGNPLPTSNRRQGSNAVQEVVALPNASFSQTVGSITTRPQNCQWCFKQYASKAKLLQHQRKNHSENFESKLDIDDIDISYTDLPESKTVSVISNEIVGYTKIEPYSDKDREYNDKIVSDQNFDDIPINENVFIDGTDLDNSNLYSLMPTRNGLLPPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -