Bgla006546.1
Basic Information
- Insect
- Brachypterus glaber
- Gene Symbol
- -
- Assembly
- GCA_958510825.1
- Location
- OY294044.1:88660263-88677511[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.7 97 4.7 2.5 2 21 195 214 195 217 0.80 2 20 0.12 6.5 8.3 1.8 1 20 340 359 340 360 0.96 3 20 2.5 1.4e+02 4.1 5.1 1 23 391 414 391 414 0.92 4 20 0.05 2.8 9.5 0.9 1 23 445 468 445 468 0.92 5 20 0.26 15 7.2 2.9 2 23 548 569 548 569 0.97 6 20 4.2 2.4e+02 3.4 0.1 1 20 606 624 606 628 0.70 7 20 0.0098 0.55 11.7 0.4 3 23 633 653 632 653 0.96 8 20 0.001 0.059 14.8 0.0 2 23 682 703 681 703 0.95 9 20 0.0092 0.52 11.8 2.5 1 23 724 747 724 747 0.97 10 20 0.093 5.3 8.6 3.9 2 23 756 777 755 777 0.97 11 20 0.00034 0.019 16.3 6.9 1 23 809 831 809 831 0.98 12 20 1.8 1e+02 4.5 0.8 3 23 847 868 847 868 0.95 13 20 0.0028 0.16 13.4 0.7 1 23 892 914 892 914 0.97 14 20 0.018 1 10.9 0.3 2 23 923 945 922 945 0.94 15 20 0.0035 0.2 13.1 1.0 1 23 965 987 965 987 0.90 16 20 3.5 2e+02 3.7 0.1 1 23 1020 1043 1020 1043 0.94 17 20 0.0012 0.067 14.6 0.9 2 23 1054 1075 1054 1075 0.97 18 20 0.00046 0.026 15.9 4.2 1 23 1156 1179 1156 1179 0.96 19 20 9.9e-06 0.00056 21.1 2.1 1 23 1187 1209 1187 1209 0.99 20 20 0.0062 0.35 12.3 0.3 1 23 1228 1251 1228 1251 0.94
Sequence Information
- Coding Sequence
- ATGGCGGAAGAGCAGGAGCCGAATTTTCAAAGCTGTTGTAGGCTCTGCCTCAGCGAAAATACGgaattaaaaagtgtgattGGTGTTTCCGATGAAGATCGTTCGTTGCAACAGAAGGTTTTGGCATATTTATCGGTAGAGGTAAATGCTCACGACAAAATAACGACGTTGATTTGCACAGGTTGCATATCGAAAATTGATTCGTGGGTAGACTACAAATGTACGTGTTCGGAAAACCAAACAAAATTGGAAAAATGGATGAACGCAAAGCGGATTTTGGATGCTCAAAATGTTCAAAACATGAGCATCCAAATAAAGGAGGAACCAGTGGAGCAACCAATGGAGCTCGAGACTCAGTCTCAGGACGAGTCTCAGGACGAGTCTCAAGACGAGTCTCAAGATGAGTCTCAAGACGAGCCTCAAACCCTCGAGTCAATAAGTATAAAACCGGAGATGGTTGTCGAGGAGGAATTGAACGAATTGCCACCCCCTCTGTCCCCCAATCCCCCCACTAATTTACCCGTAGAGGAGTCCGAAGATTCTCAATCCAGCGTCAAAAGCACTCCTGTCGATAGAAGTAGAACATGttccttttgtaaaaaaaccttTAGTAGTACAGCAAAAAAGGACAACCACGAGAAGTTTGCTCATTTGGAGAGAAGAATTTCAATACAAGCAAACGACTTGTTGACAACTAACGGTGATACATCCGCTATTTCCACCGAAAGCAATCTAAGTCAAAGTCTGGTAGAGTTGGCCCAGCCTTCTTCACCGCAGCCGCCAGACGAGGCAGAACAGCAAAAGATTCAGTTTGCCGCCGGCTTGAAACTACTTCAGACAAATTCTTCCGTAGTTTCAACGGAAACATTGACCAAAATTGAACTGAGTTATCTTGATAAGTGCACAGCTATGGTTTCAATGTTTAATACATTAGAATGCGCTTGTCATAAGGCAGTTCATCCACATATAAGAGGTTTGTTATCTCATTTACGGGCAATGAGGATCTGGTTTCCAGTTTTTACTTGTTACAACTGTATGATCACGTTTACAGATCGGTCGACCTTTACCAGACATACTTTCGGTTTATGCATTAGATCTCCTTTGGAAAGGCTTAAAACCTTATCAAACTTGCGTAAACGTAGCAATATTAAAACTCGCCTTTATCAAAACTACAAGTGCACATCATGTCGTTTTATGTATAGTTATCATGACGAGTATTGTAAGCATGTAGACGAGGCTCATTGTAATCCGCCCTATAGTTGTTCTTGCAGAAGGCAGTTTTCAGATGTAGAGGAGTTCAAGGACCATATTTATGTTAGTTGCTTAGTAGAGTACTATTGCGATATATGTTTTGTAACGACTAAGACTTTAGATGATTTCCAAAAACACGCGGTTAAAACTCACGATGAGTCCGCAGGATTTATCTTGAGACAGGATGATAACTATTTTCAACGTAGACCTGCTGGCAGAGAAAAAGTGCTAAAACCTCCCGCAGACTGTCTGGCACTGGATTCTAGTGACGAGAATGTAAGTGGCAAACGTAAAAGTGCCTTGAAACCATCCATACTCGAGCTCGAGGATGACGAACCTAGTAAGAAACGGAAAATAGCTAACCCACCGTTAAACCCAATGGACCCAGGACAATGTCCCTTATGTATAAATAGTTACACTACGTACCACAACATGACAAGACACTATAAATCTCACTTTGAGAAACCGAGTCTTTTTCCAATTTCTCACACTGAACCTTTTGAAGTTAGCATTCCGATTAACGGTGGTAATTCAGAACCATCAGAACCTGAAGATAATTCATTGTATTCATGTCCAGATTGTGGTGGAATGTACGACATTGTCGCATGGAAAATGCATTTAGAACAAAACCATGAGCCAAAGAATTGTTTGGAATGCGACAAAGTTTTCCAGTTTGATAGCGAATTAGAGCAACACAGAGGTACACATTTGAATCTCAAGATTTGTCGGGATTCAACGACTCAGTCCTACAAATCTAGCATGTTAAGTCCTTCAGACGAAAGTCCTAGTAACCAATGCGATTTATGTCCTGAAGTGTTTTCCAGCCCTGAGGAGTTAGCACAGCATACAGCTGAACATGAAAGTATACCAAAGTTGGACGCTAGTGATGAAATTGCACAAGATTTTAAAGACAATAAATACCATTGTTATGAGTGTAATAAAGTTTATTCTGGTCATTCCGGGTTATGGGATCATAATCGTCGTGTCCATCCCCAAATTAACAGCTATCCGAAAGAATGCAAATATTGCGGTCAATTGTGCACCACTCCTCAGGGTTATCATGCACATAAACGTATGCACGAAAAGGTTACGTTAGATGCGAATCCTCCTAAAGTCAAGCAGAAAGCTGGTAGAAAATCATTGGTAGATACTTCGGAGGAAAATGAAGACTACCATACTTGTAAGAgatgctttaaaatatttacaaatagaTATACTTTGAAAAACCACATGAAATCTCACGGTGTTGTTAGTGGTGctcaaaaaacaaaagaaaagaaaatatgGTGTGATATTTGTCATATATTGTGCGAAACTGCAGAAGAATTAGCTCAGCATAGAGAAAATGAGCATGCTGCAGAAGATATGCCTGATTTAACAACTGAAAAGAAAGATGATGAAAAACTTCCATTCAACGCTGTCTTCACTTGCGATACATGCGTAGCTACGTTTACTTCGAAAATTGCATTGCAGAAACATAAGGACAGTCAtataaagaaggaaaagaaacaTGTATATTGTAAACATTGTAAGATACCATTTGAATCTGTTGATCAATTAGATATACACTTGCGTGACGAGCATGATGAACCTTCGACAAATAATGAAGCAGAAACGCAAGAAACCACTACCACCCAAGTGTTTGCGTGTACTGTATGTACGAAAAAGTTTACGACTATGCATGCGTTGACTTCTCACGCTGGCTGGCATAAAAGAACTGGCAACGCCTctctaaaactgaaaaaatattttgtagttaACCAAAGACAAAGTCGCGTGAAACCCCCTGAAATCATTCCTCCGGAGCACCAGTGTTCAACTTGCTTAGCTGTTTTACCAAACGATACTGCATTACAAATCCATATTTTGGAAAAACACAGGAAAATCGATGCTCTTATGTTGGTACCAAGGTGCAACATATGCAATCAAGATTTTGAAACACAGGATGAGTATGAAACTCACAAGAGGTTGCATGATCTGTTAGAAAGGCAGAAGGTTGCCCAACAACAAGCAGCTCAACAACAAACTGTTCAGCAGGTTGCCCAACCTCAACAACAGGTTCAACAGCAAGCTATACCTCAACCACAAAAGGTTAAACAGCAACCAAAAATGTCTAAATCCCAAATGCCTAAACCCCAAATGCCTAAACCCCAAACACCTAAACCTCAAACACAAACATCAAATATGCAAGATGTTCCGAAAATTGTTAAGAATTTCCACTGCTCGCATTGCCCAGCTGCATTTACCAGACAAGATACCTTTTTGACTCATATGAGACAGAACCACAACGAATTCTGTGCTGGCGAGTTTAAATGTAATGTTTGTGAAAGAGTGTTTGAGAAACAACACTCGTTGACCATTCATATGAAGGTTCACTCTAAGCAAAAACCTAATGCTAATGTAAATGTTACTGTTTCAGCGGCAAGACTGTTTTCATGTTCCATTTGTAACATGAACTTTGATTTGCCTAAAGATTTGCGTACACATACGATAAATGCGCATCCATTTTGa
- Protein Sequence
- MAEEQEPNFQSCCRLCLSENTELKSVIGVSDEDRSLQQKVLAYLSVEVNAHDKITTLICTGCISKIDSWVDYKCTCSENQTKLEKWMNAKRILDAQNVQNMSIQIKEEPVEQPMELETQSQDESQDESQDESQDESQDEPQTLESISIKPEMVVEEELNELPPPLSPNPPTNLPVEESEDSQSSVKSTPVDRSRTCSFCKKTFSSTAKKDNHEKFAHLERRISIQANDLLTTNGDTSAISTESNLSQSLVELAQPSSPQPPDEAEQQKIQFAAGLKLLQTNSSVVSTETLTKIELSYLDKCTAMVSMFNTLECACHKAVHPHIRGLLSHLRAMRIWFPVFTCYNCMITFTDRSTFTRHTFGLCIRSPLERLKTLSNLRKRSNIKTRLYQNYKCTSCRFMYSYHDEYCKHVDEAHCNPPYSCSCRRQFSDVEEFKDHIYVSCLVEYYCDICFVTTKTLDDFQKHAVKTHDESAGFILRQDDNYFQRRPAGREKVLKPPADCLALDSSDENVSGKRKSALKPSILELEDDEPSKKRKIANPPLNPMDPGQCPLCINSYTTYHNMTRHYKSHFEKPSLFPISHTEPFEVSIPINGGNSEPSEPEDNSLYSCPDCGGMYDIVAWKMHLEQNHEPKNCLECDKVFQFDSELEQHRGTHLNLKICRDSTTQSYKSSMLSPSDESPSNQCDLCPEVFSSPEELAQHTAEHESIPKLDASDEIAQDFKDNKYHCYECNKVYSGHSGLWDHNRRVHPQINSYPKECKYCGQLCTTPQGYHAHKRMHEKVTLDANPPKVKQKAGRKSLVDTSEENEDYHTCKRCFKIFTNRYTLKNHMKSHGVVSGAQKTKEKKIWCDICHILCETAEELAQHRENEHAAEDMPDLTTEKKDDEKLPFNAVFTCDTCVATFTSKIALQKHKDSHIKKEKKHVYCKHCKIPFESVDQLDIHLRDEHDEPSTNNEAETQETTTTQVFACTVCTKKFTTMHALTSHAGWHKRTGNASLKLKKYFVVNQRQSRVKPPEIIPPEHQCSTCLAVLPNDTALQIHILEKHRKIDALMLVPRCNICNQDFETQDEYETHKRLHDLLERQKVAQQQAAQQQTVQQVAQPQQQVQQQAIPQPQKVKQQPKMSKSQMPKPQMPKPQTPKPQTQTSNMQDVPKIVKNFHCSHCPAAFTRQDTFLTHMRQNHNEFCAGEFKCNVCERVFEKQHSLTIHMKVHSKQKPNANVNVTVSAARLFSCSICNMNFDLPKDLRTHTINAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -