Basic Information

Insect: Brachypterus glaber
Gene Symbol: -
Assembly: GCA_958510825.1
Location: OY294053.1:702410-703441[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 7.5e-06 0.00043 21.5 3.3 1 23 87 109 87 109 0.96

2 9 1.8e-06 0.0001 23.5 1.5 1 23 115 137 115 137 0.98

3 9 2.3e-06 0.00013 23.1 0.8 1 23 143 165 143 165 0.98

4 9 1.9e-06 0.00011 23.4 5.6 1 23 171 193 171 193 0.96

5 9 4.9e-05 0.0028 18.9 3.9 3 23 201 221 199 221 0.95

6 9 0.012 0.7 11.4 5.5 1 21 227 247 227 247 0.94

7 9 0.00013 0.0072 17.6 1.0 2 23 256 277 255 277 0.96

8 9 0.017 0.98 10.9 8.1 1 23 283 305 283 305 0.96

9 9 9.9e-05 0.0056 18.0 3.2 1 23 311 333 311 333 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	7.5e-06	0.00043	21.5	3.3	1	23	87	109	87	109	0.96
2	9	1.8e-06	0.0001	23.5	1.5	1	23	115	137	115	137	0.98
3	9	2.3e-06	0.00013	23.1	0.8	1	23	143	165	143	165	0.98
4	9	1.9e-06	0.00011	23.4	5.6	1	23	171	193	171	193	0.96
5	9	4.9e-05	0.0028	18.9	3.9	3	23	201	221	199	221	0.95
6	9	0.012	0.7	11.4	5.5	1	21	227	247	227	247	0.94
7	9	0.00013	0.0072	17.6	1.0	2	23	256	277	255	277	0.96
8	9	0.017	0.98	10.9	8.1	1	23	283	305	283	305	0.96
9	9	9.9e-05	0.0056	18.0	3.2	1	23	311	333	311	333	0.97

Sequence Information

Coding Sequence: atgGAAAAAGTTGAGTTGGTAACTCAAGAAAGTAAAGAGGAACCTTATGGAGCATGTTCAATGAAAATCCCAATTAAAGAAGAAATTTTTAGCCCCGATGAAGACTTTAAATCTGATTTAGAAGACTACACAATTTCCGTCGAAGAAATCAAGAAAGAACTGGAAGACATAACAGATGACAATCAAAACGAAGAAAGTAATGTAAATGGATCTAaagatttttcagattttaatcATGTAGAAAGTCAGAAGAAAAATCATGTATGCCCCTGTTGCGGAAAAACATTTACCCGTTCAATGAATTTAAAAGCGCACATTTTAAGACATAAAGGAGTTAGACCATATTCATGCACAGAATGTGAAAAATCCTATGCACAAAAGGCGCATTTACAAAAGCATGTATTAATGCATCAAGACGACAAGCCTTATTCTTGCACAGAGTGTGAAAAATCTTTTCAACTAAAAGGCAATTTGAAAAATCATATGTTAATACACTCGGGAGAAAAGCCTCATTTTTGTCCTCAGTGTGGTACATCATTCGCGCGAAAATCTCACTTAAACAggcatatacatatacataatggagaaaaaaatcacttgtgcACCTTTtgcaaaaaatccttttttcgaTCAAGCGATTTAAGAAGACACGTTTTAATCCATATCGGagaaaaatcccatttttgtaagaaatgtgGAAAATCATTCTTGGATAAATCCCGTTTGAGTAAACATATGTGCCCAAAAATCGGGGAGAAAAATCTTGTTTGTTCATTGTGCGGAGAATGTTTTCCTCATGTCAACAGTTTGAAAATCCACATTTTGTCTCACAACGGTGTTAAAGTACATTCCTGTACCCAGTGTGAGAAATCCTTTTTGCATAAGTCTCATTTAATTCGACACAATCTTAAACATAGTGGGGAGAAAAATCATGTGTGCTCCActtgtttaaaatgttttactcAATTGGGCGATTTAAAAAGACATGTTTTGATACACACAGAAAGAGAAAAAGACAAGAACTCGTTTTAA
Protein Sequence: MEKVELVTQESKEEPYGACSMKIPIKEEIFSPDEDFKSDLEDYTISVEEIKKELEDITDDNQNEESNVNGSKDFSDFNHVESQKKNHVCPCCGKTFTRSMNLKAHILRHKGVRPYSCTECEKSYAQKAHLQKHVLMHQDDKPYSCTECEKSFQLKGNLKNHMLIHSGEKPHFCPQCGTSFARKSHLNRHIHIHNGEKNHLCTFCKKSFFRSSDLRRHVLIHIGEKSHFCKKCGKSFLDKSRLSKHMCPKIGEKNLVCSLCGECFPHVNSLKIHILSHNGVKVHSCTQCEKSFLHKSHLIRHNLKHSGEKNHVCSTCLKCFTQLGDLKRHVLIHTEREKDKNSF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -