Bgla007519.1
Basic Information
- Insect
- Brachypterus glaber
- Gene Symbol
- RTase
- Assembly
- GCA_958510825.1
- Location
- OY294044.1:112316787-112326533[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.38 22 6.7 0.6 2 23 363 383 363 383 0.95 2 10 0.00025 0.014 16.7 5.6 3 23 391 411 389 411 0.98 3 10 4.6e-05 0.0026 19.0 3.6 1 23 417 439 417 439 0.97 4 10 0.00051 0.029 15.7 5.2 1 23 454 476 454 476 0.98 5 10 0.015 0.86 11.1 0.7 1 23 499 521 499 521 0.94 6 10 2.6e-06 0.00015 22.9 0.4 1 23 526 548 526 548 0.96 7 10 3.8e-06 0.00022 22.4 1.6 1 23 554 576 554 576 0.99 8 10 0.00025 0.014 16.7 10.2 1 23 582 604 582 604 0.98 9 10 3.1e-05 0.0018 19.6 0.1 1 23 610 632 610 632 0.98 10 10 0.0031 0.18 13.3 0.7 5 23 641 659 638 659 0.95
Sequence Information
- Coding Sequence
- ATGGGTTCCTGCCAAAACGTTCAGTTGAGACAAACCTCTTATACTGCGTTGACAGATAACTACGATCTAGGAATACCAACAGATATCCTCTATCTCGACTTTGAGAAAGCGTTCGACAAAGTTCCACATAAGAGGCTATTGTTAAAGCTGAACCACTTTGGTGTTAGGGGAGTACTACTGCTCTGGCTCACGGAATTTCTCAAGAACCGAAAATTTAGAGTGAAGTTTAATGGTGTCTTCTCCAGTCTGCACTTAATAATCAGTGGAGTAATCCAAGGATCGGTAATTGGCCCACTcctatttttaatattcctGGCTGACTTGGCACTTTGCATTTTGGTGCACAAAATATTCTTTGCCGATGATGCCAAGATGTTTTGCAACCCAATGCTGGAGGCAGCTTCATTTGCCGAGGACATAGAGAACGTAGTTAAGTGGTCCAAAAAATGGCTGATGTCCCTCAACACCAACAAATGTACCATCCTCCATCTGGGACCCAAAAATCCCAAAATTACCTACATGCTGAATGGCGAACAGATCCGTGAAGTCCAGTCCCAAAGGGACCTTGGTGTTGACATCTCGTCAGACCTAAAGTGGGAGACACACATAATAAGGATTGTGAAAAGGGCTAACTCAATGCTATATCTAATTAGGACCGCCTTCAAAGACCACTCCGTTGCAACCAtggcaaaattattcaaatcCTACtttaaaaatgaaGATCAGCTGCCGAAGAACATTTGCCTCACCTGCCGCCAGAGATTGTACGACTTCCATGCTTTCACTGAGATTTGCCTAGACACTGAACAGTTGCTAATCAATCAGCTAGCCAATGAAAAGTCACACAAAATATTTAGCGAGTCAGTTTCCGAAAGTGAACAAAAAGATGGTGGGAAATATGCAACAGAATCTGGAAATTATTATaGTGATATACAACAGTCTGACAGATACAGTTCAGCAGAGGAAAACGAAAATGAAGAAGcgaaaaaagaagaaattttaaaagtagAACTGAAAAACGAAGAGCCCAAACGccatcaaaagtccaaacggccGGTCACCAAAGAACCACCCATCCCAAATGGAGAGTGCCCCTACTGCAAAAAGATGATCCAGGGCTACAAAATGAGGCAGCACCTGCGAGTGCACACAAAGGAAAAACCTTTTGGGTGCAACATGTGCCACCAGAGGTTCAGTTTGCATGGAAACCTGACCAGACACATGAAAACACATACAGGAGAAAAGCCGCATAAATGCCAGACTTGCgggaaagGCTTTATCCAAAAAACCTCCCTGCAGTCCCACAGGAAACTACACGAAGTCGATTGCGAAACGACCGTTTTGAACAACCGCACAGTGTTCACGTGTCACCTGTGCGGACGTCATTTTCGCCGTTTGGGTTCCTACAACCTCCACGTACAGCGCCACTCAAAAGATGGCGCCACAATCGAAGAAAAAAATGCCGAAACTAGCAATACTGATGACGATAAAAAGCACATTTGTCCAAAGTGCGGAAAAGGCTATAAAACATACACGATCATGCGTGCGCACGCTCTAACACACGGGGAAAAGGCATACTTGTGCAATAATTGCGGAAAAGGTTTCTACACGAACGCAGCATTACAATCTCACATAAAAACGCACACAGGGGTCAAACCGTATGTTTGTACGCAATGTAACAAAACGTTCGCGCATTCCGGAAGCTTGGACTCGCACATGTTAACGCACAGTGGCACGAAACCCTTCCACTGCACGCACTGCGAAAAAAGATTCACGCAAATGTCGCATTTGAGATATCACTTGCGTACGCACAGTGGCGAGCGGCCGTACGCGTGCGCGTATTGTGCAAAAACGTTCGCGCTGAAGGGAAACCTGACCGTGCACGTGCGCACGCACACGGGCGAGACGCCGTACGTGTGCACGTGCGGCAAGGGCTTCTACGATTCGAGCAGCATGAAGAAGCACGCCAAAAGTCACGTGACGTTAAAGCGCAGTGCGAGCGTGATCAAGATGGCGCAGGTGTATCGGCCTGCTGAGATTTCTGTTTgtgaaaataaatga
- Protein Sequence
- MGSCQNVQLRQTSYTALTDNYDLGIPTDILYLDFEKAFDKVPHKRLLLKLNHFGVRGVLLLWLTEFLKNRKFRVKFNGVFSSLHLIISGVIQGSVIGPLLFLIFLADLALCILVHKIFFADDAKMFCNPMLEAASFAEDIENVVKWSKKWLMSLNTNKCTILHLGPKNPKITYMLNGEQIREVQSQRDLGVDISSDLKWETHIIRIVKRANSMLYLIRTAFKDHSVATMAKLFKSYFKNEDQLPKNICLTCRQRLYDFHAFTEICLDTEQLLINQLANEKSHKIFSESVSESEQKDGGKYATESGNYYSDIQQSDRYSSAEENENEEAKKEEILKVELKNEEPKRHQKSKRPVTKEPPIPNGECPYCKKMIQGYKMRQHLRVHTKEKPFGCNMCHQRFSLHGNLTRHMKTHTGEKPHKCQTCGKGFIQKTSLQSHRKLHEVDCETTVLNNRTVFTCHLCGRHFRRLGSYNLHVQRHSKDGATIEEKNAETSNTDDDKKHICPKCGKGYKTYTIMRAHALTHGEKAYLCNNCGKGFYTNAALQSHIKTHTGVKPYVCTQCNKTFAHSGSLDSHMLTHSGTKPFHCTHCEKRFTQMSHLRYHLRTHSGERPYACAYCAKTFALKGNLTVHVRTHTGETPYVCTCGKGFYDSSSMKKHAKSHVTLKRSASVIKMAQVYRPAEISVCENK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -