Basic Information

Insect: Brachypterus glaber
Gene Symbol: -
Assembly: GCA_958510825.1
Location: OY294051.1:37913197-37920629[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.45 25 6.5 0.0 2 20 218 236 217 238 0.91

2 10 2.3 1.3e+02 4.2 2.8 1 23 252 274 252 274 0.96

3 10 7.8e-06 0.00044 21.5 2.2 2 23 325 347 324 347 0.95

4 10 3.9 2.2e+02 3.5 0.1 1 19 414 432 414 435 0.78

5 10 6.7e-06 0.00038 21.7 2.4 2 23 467 488 466 488 0.97

6 10 1e-05 0.0006 21.0 1.3 1 23 494 516 494 516 0.98

7 10 1.3e-05 0.00072 20.8 0.9 1 23 522 545 522 545 0.91

8 10 1.2e-07 6.5e-06 27.2 0.7 1 23 551 573 551 573 0.99

9 10 6.9e-06 0.00039 21.6 2.4 1 23 579 601 579 601 0.99

10 10 9.8e-06 0.00056 21.1 3.2 1 23 607 629 607 629 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.45	25	6.5	0.0	2	20	218	236	217	238	0.91
2	10	2.3	1.3e+02	4.2	2.8	1	23	252	274	252	274	0.96
3	10	7.8e-06	0.00044	21.5	2.2	2	23	325	347	324	347	0.95
4	10	3.9	2.2e+02	3.5	0.1	1	19	414	432	414	435	0.78
5	10	6.7e-06	0.00038	21.7	2.4	2	23	467	488	466	488	0.97
6	10	1e-05	0.0006	21.0	1.3	1	23	494	516	494	516	0.98
7	10	1.3e-05	0.00072	20.8	0.9	1	23	522	545	522	545	0.91
8	10	1.2e-07	6.5e-06	27.2	0.7	1	23	551	573	551	573	0.99
9	10	6.9e-06	0.00039	21.6	2.4	1	23	579	601	579	601	0.99
10	10	9.8e-06	0.00056	21.1	3.2	1	23	607	629	607	629	0.98

Sequence Information

Coding Sequence: atggAGTCCAGTGAAGGGGGGCGCCAAATCCAATTGGAGCATGTAGTCATCAGCGATGGGGTAAATAGTGAGCCCCAGTACATGATAAACAGCGAACTCTTACAGTCTCAGCATGGTCTCGTAGTGGATATAGCAGGAGGAGATTTTATTCCAGTAAATTATACCTCGGAAGACCTTTTGCCCCAAGAACTAACTGAGGAAGATCGAAACCTGGCTGCAGCTTTGGTAGCTGTGCAGTTAAGTCAGCAACAGAAACATCAGCTGCATGACGCAAATTCTTCAAATCAGTTGACTTCGATTGTCGCAAATTCAAGTTTGGggAACAAACTGTTACAAGATCAACAAATAATACTCACAGACAAAGGCTCAAACAACGGATTTCTGCATATCGTAAGCTCAGACAATATTTATGTGGAAAAACAACTTCCAAAACTAGTGAGTTTCCAAAACAATTCAAACACTATTACGACCAATCTCTATGAAGATGAAATCATCGAACAGCAAAGTTCGGCCCTAGAGCCCAAAACGGAAGAAATAAACTCAGATGGAGAGTCTCTGAGGCTTGATACTAGGTCTTCGAAAAAAAGTCTCCCtcacaaaaaaagaatttcgaaaaaactgaagaaaagtACGCCGGTGGTGAAGAAAATCAAGTGTAATCTTTGTGAACAGGTTTTTGAGGGTGATGATGAGTTTAGGCAGCATGAGATGTTGTGTCAGACTACTATAACCCCAGTGGTagctattcaaaattttaattgtcaGATTTGCAACACCATATTGCATGATCAGCTTAAgttctttgagcatttaaaaaatcattatgaaCCGACCAAAATCGAAATCAAAGAAGAAACCCTCAAAAAACCCGATCGTAGAAGCCCCAGCCCCGAACCCGAAGTGGAAGTAATACTTCCGGACACACCCGCAAAAAACACCAATGAAAATCTTCTGTCTAGCCTACTTTGTTTAACTTGCACCGATTGTAATAAAACCTTCAGaaaacaaaaaacgtttgaACAGCATATGAGAGATGCGCATTCGCCTAAGGAGGAGCCGATGAACAATGAATTTTCGGAGCCCGAAGACCTTATGGAGGGCATCAATGTCAACGTGAGCGGAAACGACGATAGTGATTACGAAGatTTGGAAGAAGAAGACGACTCGAAAGCTTGGTATAGAGAAGAAGAGCTACACCAAACTGAGCAGGATTTGAAGGAACTGGAGGCCAGTAATGGGCACATCTGTCATCTGTGCAAGCAACCTTTTCCGCTACGGGCGATATTGCTGCAACATTTGGTTACCTGTCGAGTTCTAAACGCCAATGCAGAACCCGATCCGATGGAAATCGTTACGAGAAAATCCCGGAAAACGCCCCCGAAGAAAAAAGGCAACCTACAGTGCACCGATTGCGATCGGACTTTCGTACATCGAAACTCGTTGGTTTACCACATGAGAAGTCACACCGGGCTTCGACCTCATCAGTGCGATCAGTGTGGGAAGAGCTTCTTTGCTTCCAGCGCCCTCAAGgtCCATTTGAGATTGCACTCGGGCCTTAAGCCTTACGATTGCAAGGAGTGCGGCAAAAAGTTCCGGCAATGGGGCGATCTGAAGTACCACAACACGAGCATCCACAGCAACGAGAAGAACTTCCAGTGCGAGTACTGCGGGAAGGAGTTTGCGAGGAAATATTCGCTTATTGTGCACAGAAGAATCCATACGGGTGAAAAGAACTACAAATGTGAGTTCTGCGAAAAGACGTTCCGCGCCTCCTCATATCTGCAGAACCACCGGCGCATCCATACGGGCGAGAAACCCCATCAGTGcgagGTGTGCCAGAAACCGTTCCGCGTTCGATCCGACATGAAGAGACATCAGAAAACGCATCTCAAACCGGCCGTCAAAACGGTGAGAACGCAGGCGACACCTGTGGTAAGTGGAATTAATTACGTACTATTGTATAGTTAA
Protein Sequence: MESSEGGRQIQLEHVVISDGVNSEPQYMINSELLQSQHGLVVDIAGGDFIPVNYTSEDLLPQELTEEDRNLAAALVAVQLSQQQKHQLHDANSSNQLTSIVANSSLGNKLLQDQQIILTDKGSNNGFLHIVSSDNIYVEKQLPKLVSFQNNSNTITTNLYEDEIIEQQSSALEPKTEEINSDGESLRLDTRSSKKSLPHKKRISKKLKKSTPVVKKIKCNLCEQVFEGDDEFRQHEMLCQTTITPVVAIQNFNCQICNTILHDQLKFFEHLKNHYEPTKIEIKEETLKKPDRRSPSPEPEVEVILPDTPAKNTNENLLSSLLCLTCTDCNKTFRKQKTFEQHMRDAHSPKEEPMNNEFSEPEDLMEGINVNVSGNDDSDYEDLEEEDDSKAWYREEELHQTEQDLKELEASNGHICHLCKQPFPLRAILLQHLVTCRVLNANAEPDPMEIVTRKSRKTPPKKKGNLQCTDCDRTFVHRNSLVYHMRSHTGLRPHQCDQCGKSFFASSALKVHLRLHSGLKPYDCKECGKKFRQWGDLKYHNTSIHSNEKNFQCEYCGKEFARKYSLIVHRRIHTGEKNYKCEFCEKTFRASSYLQNHRRIHTGEKPHQCEVCQKPFRVRSDMKRHQKTHLKPAVKTVRTQATPVVSGINYVLLYS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -