Bgla012411.1
Basic Information
- Insect
- Brachypterus glaber
- Gene Symbol
- SCRT1
- Assembly
- GCA_958510825.1
- Location
- OY294046.1:15810258-15841518[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0012 0.068 14.6 0.6 1 23 704 726 704 726 0.95 2 12 0.00012 0.0068 17.7 1.5 1 23 734 756 734 756 0.99 3 12 0.0023 0.13 13.7 0.2 2 23 764 785 763 785 0.96 4 12 1.9e-05 0.0011 20.2 0.9 1 23 791 813 791 813 0.98 5 12 0.00026 0.015 16.6 0.9 1 23 820 842 820 842 0.98 6 12 0.002 0.11 13.9 2.3 3 23 850 870 848 870 0.95 7 12 1.9e-05 0.0011 20.2 0.2 1 23 876 898 876 898 0.98 8 12 1.2e-06 6.6e-05 24.1 0.8 1 23 904 927 904 927 0.96 9 12 0.00019 0.011 17.1 0.6 1 23 933 956 933 956 0.95 10 12 6.7e-05 0.0038 18.5 2.1 1 23 962 984 962 984 0.99 11 12 0.00032 0.018 16.4 1.6 1 23 990 1012 990 1012 0.96 12 12 0.0027 0.15 13.5 0.1 1 23 1018 1042 1018 1042 0.94
Sequence Information
- Coding Sequence
- ATGTCGAATTCAAACAACCATAACTGTTTCAAGTGCAATCAAAGCTGTGTTTACGAAGATGTTACGAAGAATAGGGAGGACAAACGTTTATACGGTGGGCCGTGTGATTCATGCAGGCAATTTTATTGTAGGGAATGCACCAAACTATCTTCCGCTGAGGTCAGAGCACTCATGACCAAGTCACGAACACTTCTATTCTTTTGCCTTGATTGCAGGGAACTTTTTAAGGAGCTGCTTCAAATGCGAAACGAATTTAATGAGTTTAAAGAAAATCTATCGGAGCTAAAAGTCAAAATTGATTCACAACCTAAATATGCAACATCGGATGAGCTAAAAGAGCTTAAAATCGATCTGATACAtctcaaagccaaagaagagtCCCCCACTTATGCTGAAATGGTGGCCTCTAACACTTCAAATCAAAACATTCTCGAATCCAGGATTAGTGAACTGGAGATGAAAGCAATACCCACAAGAATTAACAGCAGTGATGAAAACCTAAACATTGAACCCATGATAAGTGAaatgaaagaaagagaaagaaggAAGAAAAATATCTTATTATTTGGTGTGAAGGAGTCATCCGCTAAGGAAAAAGAAAGTAGAGTTCAGGAAGATATAATTACATCGAAAGAGATTTTGAATAGCATAACAAATGTATCTTTAGAAAATGTACGCATTTATAGAATAGGAAAATCCGAGAAGCAAAAAACTAGACCTATTAAAGTTATTCTAGAATCTAAAGAAGATGTGCtggaagttttaaaaaataaatccaagGTTCAAGGCGACACATATGTAAAGTCAGACCTAACATTGGCACAAAGAAGTTACCTGAAGAGCACTGTCACTCTACTGAATGAGCGAAAAGAAAAGGGTGAAAATGTTAAgattaaatatgtaaatagtATACCCACTATTATTAAAGTatctgaaaattttttaaatcacaaTGCAGCTTGCTCTTCTGACTATGATGCAATCATTCTAACAGAGTCTTGGCTAGATGAACCAGTCTACAATGAAGAACTTCTTCCTACTAGTTATAGAGTCTTTCGTTGTGACAGAGATAAAGCACGATCTGGGAAAAGCAGAGGAGGTGGAACACTAATAGCTGTCAAATCAAAATATAACTGTGAGCAAGTTCCATTTAGTACAAAAGTCAACGTAGCTGAGGTTTTGtgcttaaaaattaactttggTCTTTCGGTATTATATGTACACTCAACCGCAAAATCCGGCAAACCGTTGGCCTCTATAGTGTCCCAGTTAGTTGATAGACCAGTCACAGAAGATGTCACAAAGGCACAAATTGTGTGCAATTCTTGTCACAGACTATGTACAGAGGTGGATGACCTTCAAAATAGGGTCAGTCAAATTAAGTCTAATGTGCTTAATAATTCCTTAAATGCAAGTAAATCGGATGATAATACCGACGAAAGAAGTGAACCTGAACGACCAAAGAAAACCTATTCTAAGAATGAAATTCCGAAGAAAATTTTGGATATTCCTTCATCTGATGATGAGTCTGCAGCTGCTGTACCCGATGAAAAATCAAACTTCCAAATAATGGAAGACATAGAAATGGAACTGGTAAAAATGCATGGCGGCCCAATGGTGGAAAACGAGGAGGAGGAggaagaagaaggagaagagAGAGAGACAGAAACCTTGGAGATGGTACTGGAAGATGACGAGCAATTCCGCGAGATGGCGCCCAGTGCGGCCAGTGATATAGTTGATTCTGGTGCGATTGAGCATTCTTCCGATTCTGATTATGAACCCGATGGCAATCATATAGAGGGTGTTGAGAGACATTTTATGGTCACCACAGAAGAGGGTATCAATATAAAGCTGGAACCAATCACCGATGAAACACCGGTCTCGGTAATCGAAAAGCCAaacatattaaagaaaaaaacaatctCTATAATGAATGGTTCAATCGAAATGAACGAAAACAAAATGGACAGTTTATCCCAAGAAATTCCTTTGGTGTCTCGGGAAGGGAATATTTACACCTGCCTACTTTGCGACGGCGACGAGATAGCCCAAGGCGAGGCGAAGCCGATAATTTCGCACATGAAGTCGGAGCATGCGCAAAGATTGTACATTTGTGACGTGTGCGGAGAGGATTTCCGGAAGAGAAACGAACTGTCGCATCATTTGGATGACCATGTGGCTACGGAAGAAGGTGATTTCCAGTGTGAGGTTTGTAACAGAATTTTCAACAACTTACGATTGTTCAGGATCCACCGCAGAATGCACTACCCGCAAAACAAGTCGTGGATTTGCGACACTTGCGGCAGAAAGTACAGCAGCAAAAATTTGCTGGACGAACACGTCAACTCCCATTTAGGGGTGCGGCCCTACGTTTGCGAAACTTGCGGCAAAGATTTCGCAAGCAAGTACACTTACAAAGCTCACGAGAAAACGCACGAAGTGAGACCGAGGCCCTATAATTGTCCTCAGTGTCCGAAGTCGTTTTTGAGTCAGCAAAATTTGTCGCAGCACGAAAAGACGCACAATGGGGTAAAAGAGTACGGTTGTCATTTGTGCGGAAAACATTTTGGATCGGCTCACAACTTGGAGgtgCATTCAATCGTCCATACCGGCTACAAACCCTTCGTTTGCGGTCTGTGCGGAAAGTCGTTCGCGCGCAAGGCAGAGATTCGAGATCACGAGCGCACGCACACGGGCGAGCGGCCCTACCAGTGCGAGATGTGTGGCGCCACCTTTAGTCAGAGATCGAACTTGCAGAGTCACAAGAGAGCGACGCATTACGACGACAAGCGATACAGATGCGATAACTGTGGGAAAGGTTTCAAACGAAGACGTCTCCTCGACTACCACGTGAAGGCGGCGCATACGGGCGAACGCCCCTTCAAATGCGACGTCTGCGAAGCTACTTTTGTCTATCCGGAACACTTCAAGAAGCACCGGAGGATCCACACCGGCGAAAAGCCCTTTCACTGCGAGGTTTGCGGCAAAGCGTTCAACAGCAGGGATAATAGGAATGCGCATAGATTTGTGCATTCCGACAAGAAGCCCTACGAGTGTTTGGTTTGTGGGGCCGGCTTTATGCGGAAGCCTTTGTTGTATCAACACATGCAAAcgcaaggTCACCTGAACGATACGATTGTGGTCAACCAGCCTCGTTTAACCACAGACGACGACCAAGTGGTAACTGTGAACGCAGCCGGCGAGATGGAAATAGTTGATGCCTCATCAGCGTCAGTAGCTTCCGACTCCAAACTGTACATAGCTGACGCGGATGgcaaTGAACACATCATCATCGACGGCGACCAGATCAATTTCGCGCACGCGGGCTCGGACGATGACGAACTAGAGAGTCACGGTGAGATCGTCGACGAAATCGAACAGGTCGTGATTCAGGACGACGAAGAAGAAGAGGACTATGCAGAGTTAATAACAAGTGAGGCTATAGCTAgtgGAGAAACCCAAATTATTGACACCCCAGAGGGTCCAATACAATTAGTAAAAGTCAGGATTCCAAATGAAAATGGAGAAGAGGAGGAGACGTGGATTAAAATAGtcccagaataa
- Protein Sequence
- MSNSNNHNCFKCNQSCVYEDVTKNREDKRLYGGPCDSCRQFYCRECTKLSSAEVRALMTKSRTLLFFCLDCRELFKELLQMRNEFNEFKENLSELKVKIDSQPKYATSDELKELKIDLIHLKAKEESPTYAEMVASNTSNQNILESRISELEMKAIPTRINSSDENLNIEPMISEMKERERRKKNILLFGVKESSAKEKESRVQEDIITSKEILNSITNVSLENVRIYRIGKSEKQKTRPIKVILESKEDVLEVLKNKSKVQGDTYVKSDLTLAQRSYLKSTVTLLNERKEKGENVKIKYVNSIPTIIKVSENFLNHNAACSSDYDAIILTESWLDEPVYNEELLPTSYRVFRCDRDKARSGKSRGGGTLIAVKSKYNCEQVPFSTKVNVAEVLCLKINFGLSVLYVHSTAKSGKPLASIVSQLVDRPVTEDVTKAQIVCNSCHRLCTEVDDLQNRVSQIKSNVLNNSLNASKSDDNTDERSEPERPKKTYSKNEIPKKILDIPSSDDESAAAVPDEKSNFQIMEDIEMELVKMHGGPMVENEEEEEEEGEERETETLEMVLEDDEQFREMAPSAASDIVDSGAIEHSSDSDYEPDGNHIEGVERHFMVTTEEGINIKLEPITDETPVSVIEKPNILKKKTISIMNGSIEMNENKMDSLSQEIPLVSREGNIYTCLLCDGDEIAQGEAKPIISHMKSEHAQRLYICDVCGEDFRKRNELSHHLDDHVATEEGDFQCEVCNRIFNNLRLFRIHRRMHYPQNKSWICDTCGRKYSSKNLLDEHVNSHLGVRPYVCETCGKDFASKYTYKAHEKTHEVRPRPYNCPQCPKSFLSQQNLSQHEKTHNGVKEYGCHLCGKHFGSAHNLEVHSIVHTGYKPFVCGLCGKSFARKAEIRDHERTHTGERPYQCEMCGATFSQRSNLQSHKRATHYDDKRYRCDNCGKGFKRRRLLDYHVKAAHTGERPFKCDVCEATFVYPEHFKKHRRIHTGEKPFHCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYQHMQTQGHLNDTIVVNQPRLTTDDDQVVTVNAAGEMEIVDASSASVASDSKLYIADADGNEHIIIDGDQINFAHAGSDDDELESHGEIVDEIEQVVIQDDEEEEDYAELITSEAIASGETQIIDTPEGPIQLVKVRIPNENGEEEETWIKIVPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -