Bgla017917.2
Basic Information
- Insect
- Brachypterus glaber
- Gene Symbol
- -
- Assembly
- GCA_958510825.1
- Location
- OY294048.1:21055152-21087533[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00064 0.036 15.4 0.2 2 23 243 264 242 264 0.96 2 11 0.35 20 6.8 0.7 1 23 266 288 266 288 0.98 3 11 4e-06 0.00023 22.4 3.5 2 23 381 402 380 402 0.97 4 11 0.00046 0.026 15.9 0.5 1 23 408 430 408 430 0.97 5 11 0.0016 0.093 14.1 1.9 1 23 436 458 436 458 0.98 6 11 5.2e-05 0.003 18.9 1.5 1 23 464 486 464 486 0.98 7 11 0.004 0.23 12.9 0.0 1 17 492 508 492 509 0.94 8 11 0.14 8 8.1 0.1 5 23 667 685 666 685 0.95 9 11 1.5e-05 0.00088 20.5 1.0 1 23 691 713 691 713 0.98 10 11 0.0011 0.06 14.7 0.4 1 23 719 741 719 741 0.97 11 11 2.7e-05 0.0015 19.8 1.1 1 23 747 769 747 769 0.98
Sequence Information
- Coding Sequence
- ATGGATGAACTTCCTAAAATGATATGCAATAACTGCCTGTACAAATTAGACTTATTTACTGACTTTCGGGATAGAGCTGCCAAAACTCAGAGCTTACTGTTAGAACTTTATAAACCAAACAACCAGCAAATGATTGTTAACCATGATTTAATAATGGATCAAGAACATGAACTTCTAGATGAAAGCAGCAAGTTAGAAAAAACAGTACTCGCCCTGGATGGAGTTATTGTAGATCATGAAATAATTCTAAATCAACATTCGTTGGATAGTATTGATTTAAATAACCATCAAGACTTGTCAAACCACAGTCTTCAAGCTCAGGAATCATTGTCAGTGGATGTTAACAAACCAAATAttcaaaattgtaattttaccaATAATAATTTAGGTTTAATTCAACAACATAGCTTATTAAATCAATTTAGGTTACAGAGCAGTTTACAAATTGGGTTGGAAGGTGAAAATGCAGTTAATGAAATTAATTCGATTTCAAGTAATttaaaaaatgagGACTATTTACAAGCAGAGGCGTTCCTTCAAGAAGATCAGCAAATCAAACTCGAGCTCTCAAAAAGCTCATTTGATGAAATCAAAAATGTTCACGATGACAGTAACTCAGCTAACTCATTTCTAGCTAATGAAAATCATGGCGATAACGAAAACGTTTATATTTTACCGAACGACGATGGTCATGGTGTTCAAAGTTTGTTGCACAAAAATTGGTGGTACTGTGATATGTGTGGAAAGACTTACGAGGAACAGAAAGCATTTGAAAAACATTACGCGATGCATTTTTATAAGTGTACACAGTGTATGACGATGTTTGATAGTGTAGAATCGTTGGATGAACATAGCAAAATGCATACGGAAggcttaaaaattctaaaagtgGAGtcaATTAAAACAAGACTGAACAGAGCAACAGTACCCTTAAAGCTCAATTTAGACCATATGAAGGATCATCAATTTAGCAACTCGGAAGGAAGTGAGTCGGAACTGGATAACGGCCTTTTGTATGAAGAAGACGAAGATGATGAAGAAATTGAAGAAAAATTTGATGCGGAGGAGCTCGACTTATTAAAGTTGAAGGAAGTGGATCGTTTTGGCGCCGGtggaaaaaagaagaaattggCGTCGAAAGTGTGTAAGGAGTGTGGAAAATGTTACAAAACAAATTACAAGTTAGCCGAGCATATGAGAAAGCATACAGGCGAGAAACCATACAAATGTAAATCGTGTGAAAAGGCCTTTAGGTCAAAAATTGGGCTAGCGCAACACGAAGCGAAACATACAGGTAAATATTCCTATGCCTGCAGTACCTGCGGAAAAGGTTTCCAATGTAGAAGTTATCTGATGGTCCACCAACGGGTACATTCCGACGTGAAGCCTTATCCCTGTACGACTTGcggtcaaaatttcaaaacgaAACAGTCTCTGTTGGATCACACCAATCGACATTTGGGAGTCAAACCGTATATATGTGAGATATGTGGTCGAGGATTTATAACAAAggATGATCTAAAATTGTTTAGAATTATTCAGTCAATAGCTGATCAGTACTTGGTTCAATGTGATGTTAATAATTTGGCTGATTGGTGTAAATTAAACGGTATgacattaaatactaacaaatgCTACAGCATCACATTCCATAGGAATAAAAAGCCTTTTGAATATCAATATGATATAGAAAGTGTTTACCTTAAATCCGTCAATGAAATCAAAGACCTTGGTGTTATTTTTGATAAACAGCTAAATTTTAACGCACATATAACTGCAAATACAAATAAAGGTTTTCAGTTACTTGGTTATATTACCAGAATAAGTACTGACTTCTCGACTGACACCTATAAAATACTATATTGTTCGATTGTAAGATCAACACTTGAATATGCATCTGTAATTTGGAGTCCATTTTATCAAAACGGTAGTGACGCTATAGAAGAGGTTCAACGGAGATTCCTGAGAACAGCTGGTTACAAATTAGGCATACAGAGAgttTGTGGAAAAGGATTTTTAACACGGGTAGATTTGAAAATCCACATGACATTGCACACTGGCGAAAAGTCGTATGTTTGCGAGATATGCGGCAAAGCGTTCGCCAGACGGGACGCTTTAAGGTGCCACAGACGATCTCATACCGGAGAACGACCATACAGTTGTGAAATTTGCGGTCAGACATTTACTCAATTCACGCCGATGGCGATACACAAGCGACTACATACAGGCGAACGGCCTTATTCCTGTGAAACCTGTGGAAAATCCTTCGTTTCCCGGTCGACTATGTTGTCGCATGCCAAAAAGCACGATAAATCCTGA
- Protein Sequence
- MDELPKMICNNCLYKLDLFTDFRDRAAKTQSLLLELYKPNNQQMIVNHDLIMDQEHELLDESSKLEKTVLALDGVIVDHEIILNQHSLDSIDLNNHQDLSNHSLQAQESLSVDVNKPNIQNCNFTNNNLGLIQQHSLLNQFRLQSSLQIGLEGENAVNEINSISSNLKNEDYLQAEAFLQEDQQIKLELSKSSFDEIKNVHDDSNSANSFLANENHGDNENVYILPNDDGHGVQSLLHKNWWYCDMCGKTYEEQKAFEKHYAMHFYKCTQCMTMFDSVESLDEHSKMHTEGLKILKVESIKTRLNRATVPLKLNLDHMKDHQFSNSEGSESELDNGLLYEEDEDDEEIEEKFDAEELDLLKLKEVDRFGAGGKKKKLASKVCKECGKCYKTNYKLAEHMRKHTGEKPYKCKSCEKAFRSKIGLAQHEAKHTGKYSYACSTCGKGFQCRSYLMVHQRVHSDVKPYPCTTCGQNFKTKQSLLDHTNRHLGVKPYICEICGRGFITKDDLKLFRIIQSIADQYLVQCDVNNLADWCKLNGMTLNTNKCYSITFHRNKKPFEYQYDIESVYLKSVNEIKDLGVIFDKQLNFNAHITANTNKGFQLLGYITRISTDFSTDTYKILYCSIVRSTLEYASVIWSPFYQNGSDAIEEVQRRFLRTAGYKLGIQRVCGKGFLTRVDLKIHMTLHTGEKSYVCEICGKAFARRDALRCHRRSHTGERPYSCEICGQTFTQFTPMAIHKRLHTGERPYSCETCGKSFVSRSTMLSHAKKHDKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -