Basic Information

Insect: Brachypterus glaber
Gene Symbol: -
Assembly: GCA_958510825.1
Location: OY294044.1:22664470-22685956[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00016 0.0093 17.3 0.1 1 23 46 68 46 68 0.98

2 13 0.011 0.61 11.6 0.2 1 23 74 97 74 97 0.97

3 13 9.9e-07 5.6e-05 24.3 3.4 1 23 122 144 122 144 0.98

4 13 0.034 1.9 10.0 0.1 1 23 157 179 157 179 0.94

5 13 0.73 41 5.8 0.4 1 23 185 208 185 208 0.91

6 13 0.054 3 9.4 2.4 2 19 216 233 216 234 0.96

7 13 0.00026 0.015 16.6 3.7 1 23 243 265 243 265 0.97

8 13 0.0059 0.33 12.4 0.3 2 23 271 292 270 292 0.96

9 13 1.5e-05 0.00083 20.6 0.4 1 23 300 322 300 322 0.98

10 13 0.0014 0.08 14.3 0.1 3 23 330 350 328 350 0.97

11 13 0.0002 0.011 17.0 0.3 1 23 356 378 356 379 0.95

12 13 0.068 3.9 9.0 1.5 1 23 393 415 393 415 0.96

13 13 0.00069 0.039 15.3 0.1 1 20 753 772 753 775 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00016	0.0093	17.3	0.1	1	23	46	68	46	68	0.98
2	13	0.011	0.61	11.6	0.2	1	23	74	97	74	97	0.97
3	13	9.9e-07	5.6e-05	24.3	3.4	1	23	122	144	122	144	0.98
4	13	0.034	1.9	10.0	0.1	1	23	157	179	157	179	0.94
5	13	0.73	41	5.8	0.4	1	23	185	208	185	208	0.91
6	13	0.054	3	9.4	2.4	2	19	216	233	216	234	0.96
7	13	0.00026	0.015	16.6	3.7	1	23	243	265	243	265	0.97
8	13	0.0059	0.33	12.4	0.3	2	23	271	292	270	292	0.96
9	13	1.5e-05	0.00083	20.6	0.4	1	23	300	322	300	322	0.98
10	13	0.0014	0.08	14.3	0.1	3	23	330	350	328	350	0.97
11	13	0.0002	0.011	17.0	0.3	1	23	356	378	356	379	0.95
12	13	0.068	3.9	9.0	1.5	1	23	393	415	393	415	0.96
13	13	0.00069	0.039	15.3	0.1	1	20	753	772	753	775	0.94

Sequence Information

Coding Sequence: ATGGGTCATGCCTGCAACATTTCACGCTTCATGACAATGTGCTAcACTCTTTTTATAGCTGAATATTACATCCAAGAAGAACACGGCGAAGAAGTAACCGAAACTCGTTACCCCATCATCGACACCCGCAAACCGTTTGTCTGCCAGCACTGCGGAGTGGGATTCGCCCGCGAGAAGGCGCTCGCGTCGCACGCGCGCGTCCACGGCGGGGACAGCCCGTTCGAGTGCCAGAAATGTGGCGAAATGTTCTGGGACGTGAACCTGCTGAGGGAGCACGTCCGGAGTAAGCATGGAGGAGAGCTGGAGGATTACGAAGACGATGAGGACGAGGATTATTCCGAAGAAGAGGCTAAATATGGTACATTTTACTGTTCGACTTGCGGCATCTCCTTTCACCGCCAAGACAACCTCCGACGTCACCAGCGCGTGCACATCAAAGAGGAGTTCGTGAATGAACACGAGTTCGGCCACATCTGCACCACGTGCGGCGAGTCCTTTCAGGAGGCCCTGGACCTGCTGGCCCACGCAGAGATACATGCCAGGGGCTCTGATCATCGGTGCATGATTTGCGGAGAAATGTGTGCGGACGACAACGCGGTCCAGGATCACGTGCAAGCGAAGCACGGCAAAAATCTGCCGCCCAACACGTGTTTGCTGTGTGGCAAAACCTGCAAGGACCGCAGGACTCTGCTTAAGCACTCCTGGGAGCACTCGAAGGAGAAGCTGTTCGCCTGCGCGAAATGCACCAAAACGTTCCACAACAAGGCGAGATTGAAGCGACACATGTTGTCGCATCGCAACAAGGTTGTCACTTGTGACGTGTGCGGCGAAGAGTTCCCCGACGGGCGCACGCTTATGAACCACCGGCACAGCCACAGCAGCGTGTCGGGCCGGCAGTTCCCTTGCCGCGAGTGCGGCAAAACTTTCGGTTCGCGGAGCTCGCAGCAGATACACATCCGGATCCACACGGGCGAGCGGCCTTACGGATGCCGGTACTGCTGGAAAGCGTTCGCAGATGGCGGTACTTTGCGGAAGCACGAACGTATTCATACAGgtGAAAAACCTTACGCCTGCGCAGTCTGTCCACGAGCGTTTAACCAACGAGTGGTTCTGCGCGAACACATTCGCTCTCATCACTCGGGCCCTGACCCGAAATTCAGCCACAGTATGACTCCCTACTGCTGCTCTGTCTGTTCGGACATGTTTGCCACTTCTCAGGATCTGATCATCCATTTAATCCATCACTGCGACATGAACACGGCAATGAAAAGGCAGCCCCAAGTGGGCCCCAGGAAGTACAAGCGCAGAAGAAAATTAAAACCGCATGAATTAGAAATGATCTCAAATCGTAACGACGAGGAAGACATCAtggaagaagaggaagaaacAGAGATTATTTACTCGGAATCCGAAGATGAGCAGGATATTCCGAAAAAAATCGTGCGAAAACCGAAGAAATCGCCGAAACCAAGCGTTGTTGAAGACACTTTTTCGGAATTGTACAACTCTTGTAGCTCGGCTATAGATAATATTAGTTCCATAGTGAATGCGAGACCGGCTCTAAAGAAGAAAAAACCAAAGTTGTTACCGCCTAGCTTACCATCCCGACCGAAAATGATTCATACCCAAAAAACTAGAGTGCCAGTAGAGTCCCTCGAGGACGGTAAAATTCGTCACAAAACCAGAACGTTGGTCACTCGAACCGAACCGACGGAGCTCAAATCTGCAACAGGGGAGCGAATAAGACCGAGAACTAAGAATGTAAGCTATCATATTTACAATGAAAAGTTGCCATTAGCCACGTTTCCTCAAGACGATACGGAAGAAGCTATCAGTAATTTGCTTAAAGACAGTTTAGTCCAGGAGGAAACCCATGAATCGAACGGTGTTGTTTACATGGACCAAGTGGAGCAGGCACCAGAGGTCGCAGCAGAGCAAACTGTAGAAACCGTTGATCCTCCCGTACCGGTTTCCATGGTGAAAATTGACAAGCGCACGCGCAGAGCCAGTGTGGGCAGGAACATTATTGGGCCGGGAAGTAAGgtTCGAATAGTAAAATCGGGAATGTTGGTGTCGAAGACCAAAACCAAACCGGAGCCTGAAGAACCAGAGAGTATTCTAAGTGACAACATCGAAGTGCCCCCTATCAGGTACAAAGAGGAACTATCTGTGGTAAAACAGGAATTCATGGATCCTAGTCCTTTGCACGAACTGGCCGACATTTCGATACAGCATGCTCAAAACATGCACGAAACATTCAAATGCGAAATGTGCAGCGAGGTGTTCTCTGATAGAGCACAGCTGTTGGTACACGTGCCTATACACATATGa
Protein Sequence: MGHACNISRFMTMCYTLFIAEYYIQEEHGEEVTETRYPIIDTRKPFVCQHCGVGFAREKALASHARVHGGDSPFECQKCGEMFWDVNLLREHVRSKHGGELEDYEDDEDEDYSEEEAKYGTFYCSTCGISFHRQDNLRRHQRVHIKEEFVNEHEFGHICTTCGESFQEALDLLAHAEIHARGSDHRCMICGEMCADDNAVQDHVQAKHGKNLPPNTCLLCGKTCKDRRTLLKHSWEHSKEKLFACAKCTKTFHNKARLKRHMLSHRNKVVTCDVCGEEFPDGRTLMNHRHSHSSVSGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRYCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPKFSHSMTPYCCSVCSDMFATSQDLIIHLIHHCDMNTAMKRQPQVGPRKYKRRRKLKPHELEMISNRNDEEDIMEEEEETEIIYSESEDEQDIPKKIVRKPKKSPKPSVVEDTFSELYNSCSSAIDNISSIVNARPALKKKKPKLLPPSLPSRPKMIHTQKTRVPVESLEDGKIRHKTRTLVTRTEPTELKSATGERIRPRTKNVSYHIYNEKLPLATFPQDDTEEAISNLLKDSLVQEETHESNGVVYMDQVEQAPEVAAEQTVETVDPPVPVSMVKIDKRTRRASVGRNIIGPGSKVRIVKSGMLVSKTKTKPEPEEPESILSDNIEVPPIRYKEELSVVKQEFMDPSPLHELADISIQHAQNMHETFKCEMCSEVFSDRAQLLVHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -