Bgla007633.1
Basic Information
- Insect
- Brachypterus glaber
- Gene Symbol
- -
- Assembly
- GCA_958510825.1
- Location
- OY294045.1:1782699-1790791[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.19 11 7.7 1.2 1 20 110 129 110 132 0.94 2 13 0.15 8.5 8.0 3.4 1 23 147 170 147 170 0.95 3 13 0.00072 0.041 15.3 0.4 1 23 211 233 211 233 0.97 4 13 7.4e-05 0.0042 18.4 4.0 1 23 1010 1032 1010 1032 0.98 5 13 4.2e-06 0.00024 22.3 4.1 1 23 1038 1060 1038 1060 0.99 6 13 1e-05 0.00058 21.1 6.0 1 23 1065 1087 1065 1087 0.99 7 13 2 1.1e+02 4.5 0.6 3 23 1095 1116 1094 1116 0.91 8 13 0.0091 0.51 11.8 0.1 2 23 1122 1143 1121 1143 0.96 9 13 7.1e-05 0.0041 18.4 1.2 1 23 1153 1175 1153 1175 0.97 10 13 0.00017 0.0095 17.3 0.2 1 23 1181 1203 1181 1203 0.98 11 13 3.7e-06 0.00021 22.5 1.0 1 23 1209 1231 1209 1231 0.98 12 13 1.4e-06 8.1e-05 23.8 1.9 1 23 1237 1259 1237 1259 0.98 13 13 0.00017 0.0096 17.2 3.4 5 23 1268 1286 1265 1286 0.95
Sequence Information
- Coding Sequence
- ATGTTAAAAGAATTATCAGTAGAAATTACACCAATAATAATTGAAGAAAGTGCGAGAAAAACATCAAAACGAAAGAGGAGTTCAAACGTAGAGAGCACAAACTaccacaataaaaaaacatcatctGACACAAAACGCAGAACAGCAGAAAAAGACGCGACCAAGGAAAAAAGCAGTAAGATAAAAGAAAGAatagaaaaagtatttaaattttataaaaatcccaGTTCAACTCCTTACGAATGCATGACATGTGaactatattttgaaaatagcttCGAAGTCCTTAATCATCATAACCACcatcataaaactcaaaaatctgCATATTACTGTTATCAGTGTGAAAAGGAATACAAATCTCATTTCCTGCTAGCAGCCCATGTCCCAGAACATGCGAAAATCTCCAGGGAAGTCGTGAaagagaataaaaataaatacttgtgTCCTACTTGCTTTAATTATTTCGAAGATTGTTTTCAGTTAAAAAGGCATTTAATCACATTTCACAAATACGACAAAAACGAATGTAATAGAATGCTAGAAAATATCAATAGCGCTGAAAATGTTTTAGTCGATCTGGATGAATCTAGTCAGAATTCAAATCCATCTAAAACAGCCGAAGCTGAATTTACATGTGAAATTTGTTTTGACATGTTCTCTACAAAATCTAGCCTAAACGAACATTTGGCTATTCATGTGGAGATTATGAACAAGTCGAAAGCAGAATCAAATAAATCGGATCAAAAGAAAGAGAAAAGTACCTCCAAGGAAACTGTAAATGCATCAAGTCTGCCTATTATCACTCAGAAAAAAAGGAAAACTGATGTTACTAACTTAAGAGCATCGCATACAGTAGAAAGGATTGATAAACTAATAAATCGTAATGAGCGTATTATGAATtcagatttaaataaaacaaaaacgatttcaaaaataaatattagtaaaGGTATTAATTCACTTTCCAATCCATTGCCATCAACTtcagaaataaaaaatccttgttcATCCGATATTACAAAAACTACTATAGAAAATAGCGATATTTCGAATCCAGATTCTAAAGAACCGGATACAAATTTTGCAATTCAGTGCAGAGCATCAGCGCGCAGTTTAACTGCCAAAATTCAAGATATGTTATCGGGGCAAATTCCCAAAGAAACTATAACCATCCCCCTTCCTGTAAAACCTGGATTGGTAAAGCCAGTAGTTAGTCCCTCCAATGTTTCAACAAATAAACCACATATGAATGCAGTTAAAGAACCGAGTAGTAGTtctaaacataaattaaataatcaaaaacCAAATATACTAAATTATCAGATTTCCAGGTATCTTCCAAAGAACCCTATTATTACATTAGTACCAAGTGAATCTAGTAACGTGAATCAATTTTCAACGCAATCTATGAACAATTTTCCATCAACTTCTGGTGACCCTAAAACACAACTGAGCTCCACCTTAACCACCAGTAACGAAACGCATACTTTACTATCTTCGGATACTTCAAATAATGATCAACATATTATTGACATAAGTGGCGGGACagaaaaaccaaaccaaactcgttattttaaatttattttaccaaatTCGATGCCAGTTAGTCAGGGCATTCAAAGCAGTGGTTCCCAACATGGTAGTATTATAGGTACACAAGGGTTTCCGTGTTTGATTAGGCTGGAAGATTTAATCCAAAGATCTATAAACAATATTGGAGTTTCAAATGCGGCAAGTACGTCTTTACCTATGTTGCCTGTAATCACAAGCTTCGGTTCAGTAGAAAATACTGATTCATCAAATACGATAGTAAATAATCAAGCAATAAACCAGACAATGGATTCATCAAATTTATCCTTACCTACGTTACCAATAATCCAAAACGTGTCTACGGTAAACAGTGACTCATCTCTACCTCTACCTACGTTACCCATTATACAAAGTGTCTCTTCATTAGAAAACGATTCtgtcttaaaaaacattttaagtgCACCAAATATTTCTTCATCTACATCCACACCTGCTACTGATGAAGAAATAATGCTCAATGTTTTGAGTGCACCGAGTACTTCTTCACTTAATGATTTTGAGAAGCTGAGGAAAAACAGTATTTTGGATCCAAAAGATTCAATTACAATAGATTCTTCGGATACTGAAAGTGAACATGAATTGGTTATAGATGAATCTGCCACGAAAATAACATTAcgaaatttaaatgatttaaaattaccTGTTATAGCGGAAGACAGTCCTGATAAACCGTTCGTTAAGAATGCTGTTGACTTTATATCCTCAGTTATTAAAGATTCACTTACCGATTTGAGgaagaaagaaaatatatttgaaaaagagacaaaagaaaaaaataaattagaaaaagttgAAACAGAAGAAAACAAATTAGCGACATACAATGTAGAGAAAGTTGAAGACGAAATAGGAGAAACTGAATTAGAAGaagttaaaaaagaagaaaataagttAGCTAACGACAGTAAAGAGAAGAAAAAAGATAAAACAGAAGAAactgaattagaaaaaaataaaatagatgaGAACTGTGGTACTTCAGATAACAAAGAAAGTCAAACAATGATAGTTCGAAAACTAAATGAcctaataaacaaaaacaatagtaTGGCGAAAGAAAAtttattttaccaAGATCATCTTTATACAGACACCTTTAACATAGACTCGATAAATCCCAGCAACTTAATACAATGCAAATACTTCATGGACATCGTGGATAATTGTAAGGACCAAACCACTTTACCTGAAAGCATACTAGAGCCATCTGTGGTCGATCAGTTAAACGAGTCAGATGCGGATTTATTGAATCTTCTAACAACCGAAGAAGATTGTTCTGATATTCTTCAGAATATTGCCACAAATGAACAGTTCCAACAATTGATTGGCGATGATACAAATTTTGTTCAAAACACAGACATGGATCAATACATAAATAGAACTTGTGTATTAGATATTGATAACAATCCTGAAAAAAGTATTGCTGAAGAAGGTTTTAAATGCGACCAGTGTGATAGAGtgtgtaaaacaaaaaaattactaaaaaaacacCTACTGATTCACACGACGGAAAAAAGATTTAAGTGTGATACATGCGGAAAGTGTTTTCGACAACGATACGAGGTTACAGCACATCAAAGAAGTCACAATAAACCTAGTTTTCAATGTGATATAtgttcaaaaatgtttattcatAAGTCTCATTTAACCATACATAGAAGAAAACACTTGGGAGAATATGTTGCGTTTTGTGAACCATGTCATCTGGGATTTGTTAGTGAATCCTTATTTCAAGCACATAATAAGATAAATCATAACAATTTGCAGTTAGTTTGTGATGTTTGTGGATCTAGATTAAGCACTCTTTCTGCCTTAAAAGAGCACAAGTTAACCCATGATTCTGATTATGGAAATGAAAGATCACATGTCTGTGATATTTGCGGAAAAAGCTATCTAACATCTAGAAATCTAAGATCACACATAAAAATTCACAACAAAACCAGACAGTATGTCTGCAGCATCTGTGGTAAGTCAGTGAGCAGCAAGAAAATACTAGAAACCCATATAAAAATGCACACTGGTGTTAAAGATTTTTCATGTGAGTTATGTGGAAAACATTTTGCTTCAAAGGAGTACTTGATTGTCCATCAAAGAATTCACTCAGGCGATAAACCATTTGAGTGTACCGTTTGTGGAAAGAAGTTCACACAGAAAACATCGTTGACTGTACATTTAAGGTTTCACACGGGAAAGAAGCCCTATAAGTGTGAATGTGGAAAAGAGTTCACAACTAAAAGCCATCTAATGAGTCATTATAAGACACATGATATTGGAGGAGTGGAAATTGAGTACATTTCTCATCCTTTACGTTAA
- Protein Sequence
- MLKELSVEITPIIIEESARKTSKRKRSSNVESTNYHNKKTSSDTKRRTAEKDATKEKSSKIKERIEKVFKFYKNPSSTPYECMTCELYFENSFEVLNHHNHHHKTQKSAYYCYQCEKEYKSHFLLAAHVPEHAKISREVVKENKNKYLCPTCFNYFEDCFQLKRHLITFHKYDKNECNRMLENINSAENVLVDLDESSQNSNPSKTAEAEFTCEICFDMFSTKSSLNEHLAIHVEIMNKSKAESNKSDQKKEKSTSKETVNASSLPIITQKKRKTDVTNLRASHTVERIDKLINRNERIMNSDLNKTKTISKINISKGINSLSNPLPSTSEIKNPCSSDITKTTIENSDISNPDSKEPDTNFAIQCRASARSLTAKIQDMLSGQIPKETITIPLPVKPGLVKPVVSPSNVSTNKPHMNAVKEPSSSSKHKLNNQKPNILNYQISRYLPKNPIITLVPSESSNVNQFSTQSMNNFPSTSGDPKTQLSSTLTTSNETHTLLSSDTSNNDQHIIDISGGTEKPNQTRYFKFILPNSMPVSQGIQSSGSQHGSIIGTQGFPCLIRLEDLIQRSINNIGVSNAASTSLPMLPVITSFGSVENTDSSNTIVNNQAINQTMDSSNLSLPTLPIIQNVSTVNSDSSLPLPTLPIIQSVSSLENDSVLKNILSAPNISSSTSTPATDEEIMLNVLSAPSTSSLNDFEKLRKNSILDPKDSITIDSSDTESEHELVIDESATKITLRNLNDLKLPVIAEDSPDKPFVKNAVDFISSVIKDSLTDLRKKENIFEKETKEKNKLEKVETEENKLATYNVEKVEDEIGETELEEVKKEENKLANDSKEKKKDKTEETELEKNKIDENCGTSDNKESQTMIVRKLNDLINKNNSMAKENLFYQDHLYTDTFNIDSINPSNLIQCKYFMDIVDNCKDQTTLPESILEPSVVDQLNESDADLLNLLTTEEDCSDILQNIATNEQFQQLIGDDTNFVQNTDMDQYINRTCVLDIDNNPEKSIAEEGFKCDQCDRVCKTKKLLKKHLLIHTTEKRFKCDTCGKCFRQRYEVTAHQRSHNKPSFQCDICSKMFIHKSHLTIHRRKHLGEYVAFCEPCHLGFVSESLFQAHNKINHNNLQLVCDVCGSRLSTLSALKEHKLTHDSDYGNERSHVCDICGKSYLTSRNLRSHIKIHNKTRQYVCSICGKSVSSKKILETHIKMHTGVKDFSCELCGKHFASKEYLIVHQRIHSGDKPFECTVCGKKFTQKTSLTVHLRFHTGKKPYKCECGKEFTTKSHLMSHYKTHDIGGVEIEYISHPLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -