Basic Information

Insect: Brachypterus glaber
Gene Symbol: -
Assembly: GCA_958510825.1
Location: OY294053.1:26130589-26134745[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0001 0.0057 18.0 6.3 1 23 192 214 192 214 0.99

2 11 1.2e-06 6.8e-05 24.0 2.1 1 23 220 242 220 242 0.99

3 11 1.2e-07 7.1e-06 27.1 1.1 1 23 247 269 247 269 0.99

4 11 4.9e-05 0.0028 18.9 2.6 1 23 273 295 273 296 0.95

5 11 5.3e-06 0.0003 22.0 2.8 1 23 315 337 315 337 0.98

6 11 0.0047 0.27 12.7 0.4 3 23 345 365 343 365 0.97

7 11 3.9e-05 0.0022 19.3 2.6 1 23 371 393 371 393 0.98

8 11 0.00016 0.0088 17.4 1.7 1 23 399 421 399 421 0.98

9 11 5.6e-05 0.0032 18.8 3.2 1 23 427 449 427 449 0.97

10 11 0.00022 0.012 16.9 1.7 1 23 455 477 455 477 0.99

11 11 0.085 4.8 8.7 3.6 1 23 483 505 483 505 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0001	0.0057	18.0	6.3	1	23	192	214	192	214	0.99
2	11	1.2e-06	6.8e-05	24.0	2.1	1	23	220	242	220	242	0.99
3	11	1.2e-07	7.1e-06	27.1	1.1	1	23	247	269	247	269	0.99
4	11	4.9e-05	0.0028	18.9	2.6	1	23	273	295	273	296	0.95
5	11	5.3e-06	0.0003	22.0	2.8	1	23	315	337	315	337	0.98
6	11	0.0047	0.27	12.7	0.4	3	23	345	365	343	365	0.97
7	11	3.9e-05	0.0022	19.3	2.6	1	23	371	393	371	393	0.98
8	11	0.00016	0.0088	17.4	1.7	1	23	399	421	399	421	0.98
9	11	5.6e-05	0.0032	18.8	3.2	1	23	427	449	427	449	0.97
10	11	0.00022	0.012	16.9	1.7	1	23	455	477	455	477	0.99
11	11	0.085	4.8	8.7	3.6	1	23	483	505	483	505	0.97

Sequence Information

Coding Sequence: ATGGAGGCTTCAGATATTCCAATTATTTGTAGAATATGTTTAGACAAAGGCCCTACCAAGAATTTAACCGTGaagcataaaaatttaaaagtgaatttCTATTTTATGCTAAATGATTGTACTTCAGTGGAGgCTGATGCTAATGATAAACTACCAgcacaaatatgcaaaaaatgcgAAATCGCGTTGATAAAGCACTTCAAGTTCCGGAGACTCGCAAAAGAAAGTGATGTAAAACTTAAAGAACTGGTACTTGATACATCTGTGAAAGAAGAAGAGAAAGACAACTTGGAAATCAAGGAAGAAAAAGTGGAAGACATACCAGTAgaaaaagaacaagaagaagACGAGAAAGAGGAAGAAAAAGAGGAGGAGAGAGAGGAAGACAATGACGATGACAAAGAGGAAAATCAAGACAGTGATAGTAGTTGGGATATCGGAGACCATGATAATAGTTttgataatgatgataatgacGAAGATGCGAAACCCTTGGATGTCCTTCAGGTTGAATTACAAGAAGAAAAATCggcaaaaaaaggaaaaagaaaaaaaaaagcagaTGAAAAACCATTTCAATGTGAGACATGCAGCAAATGTTTCAAGACTGGATTCGAATTTCGGAAACACATGCAAACTCATTCCGATGAGAGACCTTACACATGCGAAACATGCGGAAAAAGCTTTAAGACAAAACCTTCTTTGTCTGAACATAAGAGGCGTCATCAAGagtCGAAGTATGTGTGCAATATATGTCAAAAGGTATTTAAAATGTCTTACGACTTGAAAAGACATCTTCGAGTTCACGAAAAACCTCATATGTGCAGCATCTGCGGCAAGGCTTTCGCAAAAGCACCCAGTCTCAAAATGCACACGAAAAAACACCATCCAAATGACTTCTATGATAAATATCATGAAGATGATCTTGATGATATAAAAACATTCCAGTGTACAACTTGCGGAAAATTCTTCAAAGAATCGTACCAATTGCGAAAACACGAAGAAACGCACTCGACAGAGCGACCGTATGGGTGTGAAATATGCGGGAAAAGGTTTAAACTGATGGGAACACTAGGAGAACATAAAAAACGTCATACAGCCGAATTTAAGTTTGAATGTCGCCTGTGCGGTAAAAAGTTCAACATGCCCTGCAGCTTACGAAGGCACTTGCAAGTACATATCGGCGACAAGCGCTTCATGTGCAGCTACTGCGGAAAAGCCTTCTTGAAGGCCTTCGAACTGAAAAACCACACCAGGAAACATACAGGTGAAAAACCATTCGCATGTACCGTTTGTGATAAAAAATTCAGTCACATGTCCACTTTGGGAAATCACAAAAGAACGCATACCGGAGAGAAACCGTTCAAGTGTAACTTATGTGGAAAGTGTATGGCCAACAGGTCTGGTTTGGTCGTTCATAAAAGGAGTCACCTGAATGAGTCACCGTATCAGTGCATTGTTTGtttcaaaaattacagaaccaagTGTGTGCTGGACCAACATATGAGAATGCATTAA
Protein Sequence: MEASDIPIICRICLDKGPTKNLTVKHKNLKVNFYFMLNDCTSVEADANDKLPAQICKKCEIALIKHFKFRRLAKESDVKLKELVLDTSVKEEEKDNLEIKEEKVEDIPVEKEQEEDEKEEEKEEEREEDNDDDKEENQDSDSSWDIGDHDNSFDNDDNDEDAKPLDVLQVELQEEKSAKKGKRKKKADEKPFQCETCSKCFKTGFEFRKHMQTHSDERPYTCETCGKSFKTKPSLSEHKRRHQESKYVCNICQKVFKMSYDLKRHLRVHEKPHMCSICGKAFAKAPSLKMHTKKHHPNDFYDKYHEDDLDDIKTFQCTTCGKFFKESYQLRKHEETHSTERPYGCEICGKRFKLMGTLGEHKKRHTAEFKFECRLCGKKFNMPCSLRRHLQVHIGDKRFMCSYCGKAFLKAFELKNHTRKHTGEKPFACTVCDKKFSHMSTLGNHKRTHTGEKPFKCNLCGKCMANRSGLVVHKRSHLNESPYQCIVCFKNYRTKCVLDQHMRMH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -